Query gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 107 out of 3928
Neff 9.8
Searched_HMMs 23785
Date Tue May 31 18:21:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780630.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dd6_A Ribonuclease PH; exorib 100.0 0 0 316.2 19.0 240 1-242 11-251 (255)
2 3b4t_A Ribonuclease PH; RNAse, 100.0 0 0 299.6 17.9 240 1-241 6-245 (262)
3 1udn_A Ribonuclease PH, RNAse 100.0 0 0 294.4 17.8 237 1-239 1-237 (255)
4 1oys_A Ribonuclease PH; transf 100.0 0 0 294.3 15.5 240 1-242 1-241 (245)
5 2po1_A Probable exosome comple 100.0 0 0 291.1 18.2 220 1-241 16-237 (249)
6 2wnr_B Probable exosome comple 100.0 0 0 288.7 20.1 221 1-242 16-238 (240)
7 3m7n_D Probable exosome comple 100.0 0 0 292.3 16.3 220 1-241 16-240 (258)
8 2je6_B RRP41, exosome complex 100.0 0 0 286.7 18.8 220 1-241 20-241 (250)
9 2wp8_B Exosome complex compone 100.0 0 0 287.4 17.3 222 1-241 12-235 (246)
10 1r6l_A Ribonuclease PH; beta-a 100.0 0 0 287.0 17.5 237 2-240 3-239 (239)
11 2nn6_B Exosome complex exonucl 100.0 0 0 287.2 17.2 222 1-242 16-240 (249)
12 2nn6_E Exosome complex exonucl 100.0 0 0 280.9 15.8 234 1-241 36-291 (305)
13 2nn6_C Exosome complex exonucl 100.0 0 0 276.5 19.3 234 1-241 24-275 (278)
14 3m7n_G Probable exosome comple 100.0 0 0 277.2 18.4 230 1-237 22-259 (259)
15 2po1_B Probable exosome comple 100.0 1.4E-45 0 275.0 18.7 234 1-241 26-275 (277)
16 2nn6_A Polymyositis/scleroderm 100.0 1.4E-45 0 274.8 17.6 231 1-241 39-289 (358)
17 2je6_A RRP42, exosome complex 100.0 2.8E-45 0 272.3 18.4 232 1-239 29-276 (277)
18 2wnr_A Probable exosome comple 100.0 5.6E-45 0 270.2 18.8 232 1-239 24-270 (271)
19 3hkm_A OS03G0854200 protein; R 100.0 2.8E-45 0 272.0 14.9 216 1-242 4-234 (246)
20 2nn6_F MTR3, exosome component 100.0 1.4E-45 0 274.2 12.4 221 1-241 26-262 (272)
21 2wp8_A Exosome complex compone 100.0 8.4E-45 0 269.4 15.9 236 1-241 23-286 (305)
22 3gme_A Polyribonucleotide nucl 100.0 3.4E-43 0 260.4 17.7 222 1-240 314-543 (549)
23 2nn6_D Exosome complex exonucl 100.0 6.6E-43 0 258.8 16.6 213 1-242 19-234 (237)
24 3krn_A Protein C14A4.5, confir 100.0 4.6E-41 1.4E-45 248.4 4.0 203 8-241 2-208 (222)
25 3cdi_A Polynucleotide phosphor 100.0 1.1E-36 4.8E-41 223.7 18.1 226 1-240 320-549 (723)
26 1e3p_A Guanosine pentaphosphat 100.0 6.1E-36 2.6E-40 219.7 17.7 230 1-240 355-588 (757)
27 3cdi_A Polynucleotide phosphor 100.0 2.5E-29 1.1E-33 182.5 19.5 211 11-240 19-231 (723)
28 3gme_A Polyribonucleotide nucl 100.0 2.5E-29 1E-33 182.5 19.3 211 11-240 13-225 (549)
29 1e3p_A Guanosine pentaphosphat 100.0 6E-27 2.5E-31 169.1 18.4 212 12-239 37-265 (757)
30 2kj3_A Small S protein, HET-S; 36.0 13 0.00055 15.6 1.7 10 26-35 19-28 (79)
No 1
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=0 Score=316.20 Aligned_cols=240 Identities=47% Similarity=0.755 Sum_probs=222.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|+|++++|++++|||||+|++|+|+|+|+|++|.+.|+..+.+..+.+.+.+.+.|++...+.......
T Consensus 11 iR~DGR~~~e~R~i~~~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (255)
T 3dd6_A 11 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSK 90 (255)
T ss_dssp CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 32899698885576999697899987999998992999999826547741146555616899983254445543334578
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++..+++.+.++.+++++++.+..+.+++|++.++++++++||++++++++|+++||.++++|+.+. ....++++..+
T Consensus 91 ~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~v~v~vl~~DG~~~da~~~aa~~AL~~~~~~~~~~--~~~~~i~~~~~ 168 (255)
T 3dd6_A 91 GKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQA--EKVSKIPVKDY 168 (255)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSSCCBSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC
T ss_conf 8987659999999987999753813367689999886134567712766666789999986899874--77555650134
Q ss_pred CCEEECCCCCCC-CEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310200454554-1003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~~~~~~~~~~~-~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
+.++..+...+. ++.||+.+||..+++.++++++++|++|.+++.|++++|+++++.+|+++|+++|++|+++|+++|+
T Consensus 169 ~~~~~~~~~~~~~iivDpt~~Ee~~~~~~ltv~~~~~g~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~l~ 248 (255)
T 3dd6_A 169 LAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALG 248 (255)
T ss_dssp EEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEECCCCEEEECCCHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22203664036528768897787315762799993899789998314779859999999999999999999999999999
Q ss_pred HCC
Q ss_conf 209
Q gi|254780630|r 240 NEV 242 (242)
Q Consensus 240 ~~~ 242 (242)
+.+
T Consensus 249 ~~~ 251 (255)
T 3dd6_A 249 DIV 251 (255)
T ss_dssp GGG
T ss_pred HHH
T ss_conf 999
No 2
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, structural genomics, TBSGC; 2.10A {Mycobacterium tuberculosis H37RV}
Probab=100.00 E-value=0 Score=299.61 Aligned_cols=240 Identities=46% Similarity=0.739 Sum_probs=223.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
.|+|||+++|+|+|++++|++++|||||||++|||+|+|+|+||++.|.....+..+.+.......+++...+..+....
T Consensus 6 ~R~DGR~~~e~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 3b4t_A 6 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVR 85 (262)
T ss_dssp CSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 18999798885575999697899987999998993999999857767601215666614777750345677677642123
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
.+...+.......+.+++++.+++..++.++|++++.++++||+..+++++++++|+.++.+++.+. .......|+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~~l~~~g~~~~~~~~a~~~Al~~~~i~~~~~-~~~~~~~pl~~~ 164 (262)
T 3b4t_A 86 GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAA-GKLSDPRPLSCA 164 (262)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT-TCCSSSCCBCSC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHC-CCCCCCCCCCCC
T ss_conf 5633567877677765542026530158769999999974889704667788999998625421112-564435661144
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31020045455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
++++.+.+.++.++.||+.+|+..+++.+++++++++++|.+|++|+++.|++++|.+|+++|.++|++|+++||++|+.
T Consensus 165 ~~~~~~~~~~~~~~~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~e~l~~~i~~A~~~~~~l~~~lk~~l~~ 244 (262)
T 3b4t_A 165 IAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALAL 244 (262)
T ss_dssp EEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCEEEECCCCCHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 22224540352375245421000464479999879997999986057787399999999999999999999999998611
Q ss_pred C
Q ss_conf 0
Q gi|254780630|r 241 E 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 245 k 245 (262)
T 3b4t_A 245 P 245 (262)
T ss_dssp C
T ss_pred C
T ss_conf 1
No 3
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=0 Score=294.41 Aligned_cols=237 Identities=49% Similarity=0.814 Sum_probs=219.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|+|++++|++++|||||||++|+|+|+|+|++|.+.|....++..+...+.+...++....+.......
T Consensus 1 lR~DGR~~~e~R~i~i~~g~~~~adGSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEECHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 98989898885576999796899987999998992999999823006764357887726899994354566655542235
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++..++..+.++.+.+.+++.+....+++++++++++++++||++++++++++.+||.++++|+.+. +.....++.+.
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~i~v~v~vl~~dg~~~~a~~~a~~~Al~~a~i~~~~~--~~~~~~~~~~~ 158 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKE--GIIEETPIKDF 158 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TSSSSCCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHC--CCCCCCCCCCC
T ss_conf 7767458899987665567775552147537999999724888806765444565655411305445--98311462676
Q ss_pred CCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3102004545541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
+.++.+...+..++.||+.+|+..++++++++++.+|++|.+++.|.++.|+++++.+|+++|+++|++|++++|++++
T Consensus 159 ~~~~~~~~~~~~~~~d~~~~Ee~~~~~~~~v~~~~~g~i~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~k~~~~ 237 (255)
T 1udn_A 159 VAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYV 237 (255)
T ss_dssp EEEEEEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCCCEEEECCCCHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1210113311078515876665136613899981899889888331469879999999999999999999999999874
No 4
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=0 Score=294.33 Aligned_cols=240 Identities=43% Similarity=0.691 Sum_probs=212.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
||+|||+++|+|||++++|++++|+|||+|++|+|+|+|+|++|.+.|....++..+...+.+.+.+.....+.......
T Consensus 1 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 98989899985586999796899987999998994999999867646642257766623666751243344454554567
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++....+.++++.+++++++.++++.+++|+++++++++++||+.++++++++++||.++++++..... ....+....
T Consensus 81 ~~~~~~~~~~~~~i~~~l~~~i~l~~~~~~~i~v~v~vl~~dG~~~~a~~~a~~~Al~~~~~~l~~~g~--~~~~~~~~~ 158 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGT--IKTNPITDF 158 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTS--SSSCCBCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHEECCHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
T ss_conf 885436999999999999853882322528999999985167980133222246677776788765587--333654442
Q ss_pred CC-EEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31-02004545541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 161 VA-AISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 161 ~~-~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
.. ........+..+.||+.+|+..+++.++++++.++++|.+|+.|++++++++++.+|+++|+++|++|+++||++|+
T Consensus 159 ~~~~~~~~~~~~~~~~Dpt~~Ee~~~~~~~~~~~~~~~~i~~i~~~g~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~L~ 238 (245)
T 1oys_A 159 LAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCEECCCCHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01355302234424317977887316615899980899879987605679859999999999999999999999999985
Q ss_pred HCC
Q ss_conf 209
Q gi|254780630|r 240 NEV 242 (242)
Q Consensus 240 ~~~ 242 (242)
++.
T Consensus 239 e~~ 241 (245)
T 1oys_A 239 DSL 241 (245)
T ss_dssp ---
T ss_pred HHH
T ss_conf 337
No 5
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=0 Score=291.06 Aligned_cols=220 Identities=27% Similarity=0.374 Sum_probs=198.3
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9678998011787999976632688289999689489999993332453-101554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.+. ..+.+.++.+.+.+.+.+++...|....
T Consensus 16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-- 93 (249)
T 2po1_A 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPG-- 93 (249)
T ss_dssp CBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSS--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCEEEEEEEECCCCCCCCCCCCC--
T ss_conf 048997988856869996988998748999979989999954685567311125762699998603787767634668--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
......++++.+.+++++.+++..+++|+|.++++++++||++++++++|+++||.|+++|+.+
T Consensus 94 ---~~~~~~~~~~~l~~~l~~~i~~~~~~~~~i~v~v~vl~~DG~~~~aai~Aa~lAL~dagi~~~~------------- 157 (249)
T 2po1_A 94 ---PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRD------------- 157 (249)
T ss_dssp ---CCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSS-------------
T ss_pred ---CCHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC-------------
T ss_conf ---8778888889999887412686346987999999971679987898888889999875998654-------------
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8310200454554100334310123430368887-599868999921863686899999999999999999999999997
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
+++++++++.++.++.||+.+|+..+++.+++++ ++.++++++++.| .|+++++.+|+++|+++|++|+++++++|
T Consensus 158 ~v~avsv~~~~~~~ilDPt~~Ee~~~~~~~~va~~~~~~~i~~~~~~G---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l 234 (249)
T 2po1_A 158 LVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREAL 234 (249)
T ss_dssp CCEEEEEEEETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCEEEECCCHHHHHCCCEEEEEEEECCCCCEEEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 179999999889888459979970255079999967999889999851---19899999999999999999999999999
Q ss_pred HHC
Q ss_conf 720
Q gi|254780630|r 239 SNE 241 (242)
Q Consensus 239 ~~~ 241 (242)
+++
T Consensus 235 ~~~ 237 (249)
T 2po1_A 235 KEK 237 (249)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 989
No 6
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacterthermautotrophicus}
Probab=100.00 E-value=0 Score=288.66 Aligned_cols=221 Identities=26% Similarity=0.369 Sum_probs=198.3
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333245-3101554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP-MWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
||+|||+++|+|++++++|++++|||||+|++|+|+|+|+|++|.+.+ +..+.++++.+.+++.+.|++...+...
T Consensus 16 iR~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~--- 92 (240)
T 2wnr_B 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRP--- 92 (240)
T ss_dssp CCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCS---
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC---
T ss_conf 48999598883085999598899865899998990999997866334544224797589999994177664554578---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
....++.+.++.+.+++++.+..+.+|+++|.++++++++||++++++++|+++||.|+++|+.+
T Consensus 93 --~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~V~v~vL~~DG~~~~aai~aa~lAL~dagip~~~------------- 157 (240)
T 2wnr_B 93 --GPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRD------------- 157 (240)
T ss_dssp --SCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSS-------------
T ss_pred --CCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-------------
T ss_conf --98457789999998764254468888977999999996589991897646889999976997325-------------
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8310200454554100334310123430368887-599868999921863686899999999999999999999999997
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
++++++++..++.+++||+.+||..+++.+++++ ++.++++++++.| .++++++.+|+++|.+++++|+++|+++|
T Consensus 158 ~v~avsv~~~~~~~ivDpt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~G---~~~~~~l~~~l~~A~~~~~~l~~~~~~~l 234 (240)
T 2wnr_B 158 MVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDG---NLTPEEFERALDLAVEGCLRIHEVQKEAL 234 (240)
T ss_dssp CCEEEEEEESSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCEEEECCCHHHHHHCCCCEEEEEECCCCCEEEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 321689997799588479978874147510289991699389999306---53999999999999999999999999997
Q ss_pred HHCC
Q ss_conf 7209
Q gi|254780630|r 239 SNEV 242 (242)
Q Consensus 239 ~~~~ 242 (242)
+++.
T Consensus 235 ~k~~ 238 (240)
T 2wnr_B 235 RKRY 238 (240)
T ss_dssp HC--
T ss_pred HHHH
T ss_conf 5765
No 7
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=0 Score=292.34 Aligned_cols=220 Identities=26% Similarity=0.379 Sum_probs=194.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531-01554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
+|+|||+++|+|++++++|++++|+|||+|++|||+|+|+|+||.+.+.. ...+..+.+.+.+.+.|++...+....
T Consensus 16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 93 (258)
T 3m7n_D 16 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPG-- 93 (258)
T ss_dssp EETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSS--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCC--
T ss_conf 558997988833849995888998758999989979999977743568330368865999999862688765554789--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
...++.++++.+++++++.++...+++|.|+++++++++||+++++++||+++||.++++|+.+
T Consensus 94 ---~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~v~v~vl~~DG~~~~aainAa~lAL~dagIp~~~------------- 157 (258)
T 3m7n_D 94 ---PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKG------------- 157 (258)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSS-------------
T ss_pred ---CCHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC-------------
T ss_conf ---9888999998875232455546457976999999995488991899999889999976997446-------------
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCC---CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8310200454554100334310123430368887-5998---68999921863686899999999999999999999999
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSG---HIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQK 235 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~---~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~ 235 (242)
++++++++..++.+++||+.+|+..+++.+++++ ..+| +|+++++. |.|+++++.+|+++|+++|++|+++|+
T Consensus 158 ~v~avsv~~~~g~~ivDPt~~Ee~~~~~~l~va~~~~~g~~~~I~~~~~~---G~~~~~~l~~~l~~a~~~~~~i~~~~~ 234 (258)
T 3m7n_D 158 MITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYEMQR 234 (258)
T ss_dssp EEEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEE---EEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCCEEEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25589998212548977898898337834899995789989369999827---854999999999999999999999999
Q ss_pred HHHHHC
Q ss_conf 997720
Q gi|254780630|r 236 DVISNE 241 (242)
Q Consensus 236 ~~L~~~ 241 (242)
++|+++
T Consensus 235 ~~l~~~ 240 (258)
T 3m7n_D 235 EAILRR 240 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999989
No 8
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=0 Score=286.66 Aligned_cols=220 Identities=24% Similarity=0.337 Sum_probs=198.4
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 9678998011787999976632688289999689489999993332453-101554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.+. ....++++.+.+.+.+.|++...|..+
T Consensus 20 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~--- 96 (250)
T 2je6_B 20 KRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNP--- 96 (250)
T ss_dssp CBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCS---
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC---
T ss_conf 66889798883175999698899887999997897999970367434421015751289999860388645432367---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
.....+..++..+.+++++.+++..+++++|.++++++++||+..+++++|+++||.++++|+. +
T Consensus 97 --~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~i~v~vl~~DG~~~~aai~Aa~~AL~dagip~~-------------~ 161 (250)
T 2je6_B 97 --APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMR-------------D 161 (250)
T ss_dssp --SCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBS-------------S
T ss_pred --CCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-------------C
T ss_conf --8863322555644543310132301797799999976067899799999876899997699975-------------7
Q ss_pred CCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 83102004545541003343101234303688875-99868999921863686899999999999999999999999997
Q gi|254780630|r 160 HVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~-~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
++++++++..++.+++||+.+|+..+++.++++++ +.++||++|+.| .++++++.+|+++|.++|++|+++++++|
T Consensus 162 ~v~avs~~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~G---~~~~~~~~~~l~~A~~~~~~i~~~i~~al 238 (250)
T 2je6_B 162 LIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREAL 238 (250)
T ss_dssp CCEEEEEEEETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCCEEEEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 415999985688786079978960457317999958999589999867---59899999999999999999999999998
Q ss_pred HHC
Q ss_conf 720
Q gi|254780630|r 239 SNE 241 (242)
Q Consensus 239 ~~~ 241 (242)
++.
T Consensus 239 ~~~ 241 (250)
T 2je6_B 239 KSK 241 (250)
T ss_dssp HGG
T ss_pred HHH
T ss_conf 877
No 9
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=287.41 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=194.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCC-CCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 96789980117879999766326-882899996894899999933324531-0155434211001005556532223334
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWITAEYGMLPRSTGNRVKREA 78 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~-a~GSa~v~~G~T~Vl~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (242)
+|+|||+++|+|+|++++|++++ |||||+|++|+|+|+|+|+||.+.+.. ...++.+.+.+++.+.|++...+...
T Consensus 12 ~R~DGR~~~e~R~i~i~~g~~~~~adGSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-- 89 (246)
T 2wp8_B 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKS-- 89 (246)
T ss_dssp CCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC--
T ss_conf 469996988855869996876787885899998998999999947555565446886179999997267664344455--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCC
Q ss_conf 44477731023444432242100022004880222344203555763101000122210110010000014631011243
Q gi|254780630|r 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158 (242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~ 158 (242)
..+..++..++++.+++++++.++++.+|+++|+++++++++||++++++++|+++||.|+++|+.
T Consensus 90 -~~~~~~~~~el~~~l~~~l~~~i~~~~~p~~~I~v~v~VL~~DG~~~~aai~Aa~~AL~dagIp~~------------- 155 (246)
T 2wp8_B 90 -SHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMF------------- 155 (246)
T ss_dssp -----CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBS-------------
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-------------
T ss_conf -799860567778999874066567656796579999999437998067778888899996699856-------------
Q ss_pred CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78310200454554100334310123430368887599868999921863686899999999999999999999999997
Q gi|254780630|r 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
++++++++++.++.+++||+.+||........+.+++.++++++++.| .++.+++.+|+++|+++|++|+++|+++|
T Consensus 156 ~~v~avs~~~~~~~~lvDpt~~Ee~~~~~~~~~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~l~~~l 232 (246)
T 2wp8_B 156 DYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVED---KIPLDRLENVLAIGIAGAHRVRDLMDEEL 232 (246)
T ss_dssp SCEEEEEEEEETTEEESSCCHHHHHHSEEEEEEEETTSSCEEEEEECS---CEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCEEEECCCHHHHHCCCCEEEEEECCCCEEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 862007999987848889386897255965999958999799998269---95999999999999999999999999999
Q ss_pred HHC
Q ss_conf 720
Q gi|254780630|r 239 SNE 241 (242)
Q Consensus 239 ~~~ 241 (242)
+++
T Consensus 233 ~~~ 235 (246)
T 2wp8_B 233 RKH 235 (246)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 10
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transferase; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=0 Score=287.00 Aligned_cols=237 Identities=52% Similarity=0.815 Sum_probs=220.6
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 67899801178799997663268828999968948999999333245310155434211001005556532223334444
Q gi|254780630|r 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSG 81 (242)
Q Consensus 2 R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 81 (242)
|+|||+++|+|||++++|++++|||||+|++|+|+|+|+|++|++.|...+.++++...+.+.+.++....+.......+
T Consensus 3 R~DGR~~~e~R~i~i~tg~l~~AdGSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (239)
T 1r6l_A 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRG 82 (239)
T ss_dssp CTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHHT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 89899998844769996988999879999989939999998066367653588851689988503435565434557767
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
Q ss_conf 77731023444432242100022004880222344203555763101000122210110010000014631011243783
Q gi|254780630|r 82 RQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHV 161 (242)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~ 161 (242)
..........+.+.+++++.+++..++.+.+.+++++++.||+.++++.++.++|+.++++++.+. +.....|+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~vl~~dg~~~~~~~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~ 160 (239)
T 1r6l_A 83 KQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKR--GALKGNPLKQMV 160 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHT--TCCSSCCBCCCE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf 757889999999864442248830039748999999982689854210237889999877777654--784326522553
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1020045455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 162 AAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 162 ~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
.+++++..++.++.||+.+|+..+++++++++++++++|.+++.|++++|++++|.+|+++|+++|++|+++++++|++
T Consensus 161 ~~~~~~~~~~~~v~d~~~~Ee~~~~~~l~v~~~~~~~i~~i~~~~~~~~~~~~~l~~~i~~A~~~~~~l~~~~~~al~e 239 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEECCCCCEEEECCCHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4313211799884058887873157569999928998899996157798599999999999999999999999998677
No 11
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=0 Score=287.15 Aligned_cols=222 Identities=25% Similarity=0.314 Sum_probs=198.3
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC--CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531--0155434211001005556532223334
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGWITAEYGMLPRSTGNRVKREA 78 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|.+.+.. ...++.+.+.+++.+.|++...+..+..
T Consensus 16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~p~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~ 95 (249)
T 2nn6_B 16 YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPH 95 (249)
T ss_dssp BCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 12899799984274999797999888999999993999999937544653001379759999998318988886655546
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCC
Q ss_conf 44477731023444432242100022004880222344203555763101000122210110010000014631011243
Q gi|254780630|r 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158 (242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~ 158 (242)
...+..+++..+.+++++.++...+++|.+.++++++++||++++++++|+++||.++++|+.
T Consensus 96 ----~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~i~v~vl~~DG~ll~aa~~aa~~AL~~agip~~------------- 158 (249)
T 2nn6_B 96 ----GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMR------------- 158 (249)
T ss_dssp ----STHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCS-------------
T ss_pred ----CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC-------------
T ss_conf ----763112201899865423366233787399999999737898307888888999985699864-------------
Q ss_pred CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78310200454554100334310123430368887-59986899992186368689999999999999999999999999
Q gi|254780630|r 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 237 (242)
++++++++++.++.++.||+.+||..+++.+++++ +++++||++|+.| .++++++.+|++.|++++++++++++++
T Consensus 159 ~~v~avs~~~~~~~~ivDpt~~Ee~~~~~~l~va~~~~~~~i~~i~~~g---~~~~~~~~~~~~~A~~~~~~i~~~i~~~ 235 (249)
T 2nn6_B 159 DFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDA---RLHEDHLERVLEAAAQAARDVHTLLDRV 235 (249)
T ss_dssp SCCEEEEEEEETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS---CCBTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCEEECCCCHHHHHCCCCEEEEEECCCCCCEEEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4145899998757476169978872278679999838999769999483---5999999999999999999999999999
Q ss_pred HHHCC
Q ss_conf 77209
Q gi|254780630|r 238 ISNEV 242 (242)
Q Consensus 238 L~~~~ 242 (242)
|++++
T Consensus 236 l~~~~ 240 (249)
T 2nn6_B 236 VRQHV 240 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 12
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=0 Score=280.93 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=200.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|++|+..+ ..+.++.+.+.+.+.+.|++...+..+..
T Consensus 36 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-- 112 (305)
T 2nn6_E 36 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP-KLEKPNEGYLEFFVDCSASATPEFEGRGG-- 112 (305)
T ss_dssp CCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCC-CSSSCSSCCEEEECCCCTTTCSSCCTTST--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCC-HHHCCCCCCEEEEEEECCCCCCCCCCCCC--
T ss_conf 889997988852759996977898727999989948999998875686-67688656033455416644456578898--
Q ss_pred CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf 477731023444432242--------100022004880222344203555763101000122210110010000014---
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--- 149 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~--- 149 (242)
.......+..+.+.+ .+.++...++.|++.++++++++||++++++++|+++||.++++|+.....
T Consensus 113 ---~~~~~~~~~~l~~~l~~~~~~~~~~l~i~~~~~~~~i~i~v~Vl~~DG~~l~a~i~A~~~AL~d~~iP~~~~~~~~~ 189 (305)
T 2nn6_E 113 ---DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 189 (305)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf ---84113442799999864225556664056778528999999997289987889999999999864998401014654
Q ss_pred -----------CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf -----------631011243783102004545541003343101234303688875998689999218636868999999
Q gi|254780630|r 150 -----------KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA 218 (242)
Q Consensus 150 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~ 218 (242)
....++++.+.++++++...++.++.||+.+||..+.+.++++++++++++.+++.| +++++++++.+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~p~~~t~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~i~~~~~~G-~~~i~~~~l~~ 268 (305)
T 2nn6_E 190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE 268 (305)
T ss_dssp ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEE-SSCBCHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHH
T ss_conf 30332034443544456535771578611234847758898999436853899992899899999269-97889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999997720
Q gi|254780630|r 219 MLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 219 ~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
|+++|+++|++++++++++|+++
T Consensus 269 ~i~~a~~~~~~l~~~l~~~L~~~ 291 (305)
T 2nn6_E 269 MMETGKRVGKVLHASLQSVVHKE 291 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999888
No 13
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=0 Score=276.47 Aligned_cols=234 Identities=17% Similarity=0.184 Sum_probs=197.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|...+. ...+..+.+.+.+.+.+++...+..+...
T Consensus 24 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~- 101 (278)
T 2nn6_C 24 CRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVPNVDLPPLCSSRFRSGPPG- 101 (278)
T ss_dssp CCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCC-SSSTTCCCCEEEEECCSSSCTTSCSSSCC-
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCH-HHCCCCCCCEEEEEECCCCCCCCCCCCCC-
T ss_conf 8699969998447599979878887179999799479888884135864-55255564136888535456675678898-
Q ss_pred CCCCCCHHHHHHHHHHH--------HHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC--
Q ss_conf 47773102344443224--------21000220048802223442035557631010001222101100100000146--
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRA--------LRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-- 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~-- 150 (242)
......+..+.+. +...+....++.|.+.++++++++||++++++++|+++||.++++|+......
T Consensus 102 ----~~~~~~~~~l~~~~~~~~~i~~~~l~i~~~~~~~~I~i~v~Vl~~DG~~~~a~~~A~~~AL~d~~iP~~~~~~~~~ 177 (278)
T 2nn6_C 102 ----EEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA 177 (278)
T ss_dssp ----HHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSB
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCE
T ss_conf ----4220111799998875445677763131268508999999998479981228999999999964998155416722
Q ss_pred -------CCEECCCCCCCCEEECCCCCCC-CEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf -------3101124378310200454554-10033431012343036888759986899992186368689999999999
Q gi|254780630|r 151 -------FQLSQVLKGHVAAISCGMLCGY-PIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNL 222 (242)
Q Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~ 222 (242)
...++++++.+++++++..++. ++.||+.+||..+++.++++++++|++|.+++.| +.+++++++.+|+++
T Consensus 178 ~~~~~~~~~~~l~~~~~p~~~t~~~~~~~~~l~Dpt~~Ee~~~~~~~~v~~~~~~~i~~~~~~g-~~~l~~~~l~~~i~~ 256 (278)
T 2nn6_C 178 LAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPG-GSGLTGAKLQDCMSR 256 (278)
T ss_dssp CCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEECTTCCEEEEEESC-CSCCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCHHHHHHCCCEEEEEECCCCCEEEEECCC-CCCCCHHHHHHHHHH
T ss_conf 5532444332231136724899986169628727998999525876999995999899999278-988799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999997720
Q gi|254780630|r 223 AKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 223 a~~~~~~i~~~i~~~L~~~ 241 (242)
|.+++++++++++++|++.
T Consensus 257 A~~~~~~l~~~l~~~l~~~ 275 (278)
T 2nn6_C 257 AVTRHKEVKKLMDEVIKSM 275 (278)
T ss_dssp HHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999750
No 14
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=0 Score=277.20 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=201.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+||+++++|++++|||||+|++|+|+|+|+|++|...+ ....+.++.+.+.+.+.++....+.....
T Consensus 22 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 98 (259)
T 3m7n_G 22 ERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIVNAELVPLASPTFEPGPP-- 98 (259)
T ss_dssp CCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECC-CSSCTTSCEEEEEEECCTTSCTTCCSSSS--
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCC--
T ss_conf 879896998842759996977898848999968837999842577786-12456654488876214555434137788--
Q ss_pred CCCCCCHHHHHHHHHH--------HHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 4777310234444322--------42100022004880222344203555763101000122210110010000014631
Q gi|254780630|r 81 GRQGGRSQEIQRMIGR--------ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ 152 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~ 152 (242)
.......++.+++ .+++.++...++.|++.++++++++||++++|+++|+++||.++++|+........
T Consensus 99 ---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i~v~v~vl~~DG~~~~a~~~a~~~AL~~a~i~~~~~~~~~~ 175 (259)
T 3m7n_G 99 ---DENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred ---CCHHHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ---83056777888631110000123433776678615899999997789984777889999999865754100002454
Q ss_pred EECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01124378310200454554100334310123430368887599868999921863686899999999999999999999
Q gi|254780630|r 153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 (242)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~ 232 (242)
.++|+.+.++++++...++.++.||+.+|+..+++.++++++++++++.+++.| +.+++++++.+|+++|.++|+++++
T Consensus 176 ~~l~~~~~p~~~t~~~~~~~~l~Dpt~~Ee~~~~~~~~v~~~~~~~i~~~~~~g-~~~~~~~~l~~~i~~a~~~~~~l~~ 254 (259)
T 3m7n_G 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLRE 254 (259)
T ss_dssp EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEES-SCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 457645875313665444468607998899645956999991899899999178-9777999999999999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780630|r 233 LQKDV 237 (242)
Q Consensus 233 ~i~~~ 237 (242)
++|+.
T Consensus 255 ~~~ei 259 (259)
T 3m7n_G 255 KFKEI 259 (259)
T ss_dssp TTC--
T ss_pred HHHCC
T ss_conf 99639
No 15
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1.4e-45 Score=275.00 Aligned_cols=234 Identities=21% Similarity=0.266 Sum_probs=199.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|+|++++|++++|||||+|++|+|+|+|+|++|...|. .+.+..+...+.+...+++...+....
T Consensus 26 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~--- 101 (277)
T 2po1_B 26 KRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF-PDTPNMGVMTTNVELVPLASPTFEPGP--- 101 (277)
T ss_dssp CCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCC-TTCTTSCEEEEEEEECGGGCTTCCSSS---
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCH-HHCCCCCCEEEEEEEECCCCCCCCCCC---
T ss_conf 7798979888557599979878988489999799189998526766733-106777732345555202344433446---
Q ss_pred CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC--
Q ss_conf 477731023444432242--------1000220048802223442035557631010001222101100100000146--
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-- 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~-- 150 (242)
.........+.+++.+ ...++...++.|.+.++++++++||++++++++|+++||.++++|+......
T Consensus 102 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~I~i~v~vl~~dG~~~~a~~~A~~~AL~~a~ip~~~~~~~~~ 179 (277)
T 2po1_B 102 --PDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETG 179 (277)
T ss_dssp --CCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTTC
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf --784024566688999987433244446766668734999999996489987899999999999975997311122332
Q ss_pred ------CCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf ------31011243783102004545541003343101234303688875998689999218636868999999999999
Q gi|254780630|r 151 ------FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 (242)
Q Consensus 151 ------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~ 224 (242)
...++|+.+.+.++++...++.++.||+.+|+..+++.++++++++++++.+++.| ++.++++++.+|+++|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~~~v~~~~~~~i~~~~~~g-~~~l~~~~l~~~i~~a~ 258 (277)
T 2po1_B 180 EVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSE-GGAFKLEEVMYAVETAF 258 (277)
T ss_dssp CEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEES-SCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHHHH
T ss_conf 10013445677756773279996219989767876667405833999984999899999059-96669999999999999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999997720
Q gi|254780630|r 225 DRIADLIKLQKDVISNE 241 (242)
Q Consensus 225 ~~~~~i~~~i~~~L~~~ 241 (242)
++|++++++++++|++.
T Consensus 259 ~~~~~l~~~i~~~l~k~ 275 (277)
T 2po1_B 259 KKAEEIRKLILEAVEKA 275 (277)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999877
No 16
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-45 Score=274.77 Aligned_cols=231 Identities=21% Similarity=0.274 Sum_probs=194.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++| +|+|||+|++|+|+|+|+|++|...|. ...++++.+.+++.+.|++...+..+.
T Consensus 39 ~R~DGR~~~e~R~i~i~~g---~a~GSa~V~lG~T~Via~V~~ei~~p~-~~~p~~g~i~v~V~~~~~as~~~~~~~--- 111 (358)
T 2nn6_A 39 KRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPK-LNRATEGILFFNLELSQMAAPAFEPGR--- 111 (358)
T ss_dssp CCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCC-STTTTSCCEEEEEEECTTTCSSCCSSS---
T ss_pred CCCCCCCCCCCCCEEEEEC---CCCEEEEEEECCCEEEEEEEECCCCCH-HHCCCCCCEEEEEEECCCCCCCCCCCC---
T ss_conf 8899979988668289978---998499999899699999994334954-428986742788875675677778889---
Q ss_pred CCCCCCHHHHHHHHHHHHH--------HHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC--
Q ss_conf 4777310234444322421--------000220048802223442035557631010001222101100100000146--
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALR--------SVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK-- 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~-- 150 (242)
..++...+++.+.+.+. ..++...++.|.+.++++++++|||+++|+++|+.+||.++++|.......
T Consensus 112 --~~~~~~~ls~~l~~~l~~s~~idle~L~I~~g~~~w~I~Vdv~VL~~DGnlldAa~~Aa~aAL~d~~iP~v~v~~~~~ 189 (358)
T 2nn6_A 112 --QSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEV 189 (358)
T ss_dssp --THHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCC
T ss_pred --CCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf --981168888999998741023454433455787059999999998689987999999999999982898455137632
Q ss_pred --------CCEECCCCCCCCEEECCCC--CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf --------3101124378310200454--554100334310123430368887599868999921863686899999999
Q gi|254780630|r 151 --------FQLSQVLKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAML 220 (242)
Q Consensus 151 --------~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l 220 (242)
...++.+.+.++++++++. ++.++.||+.+||..+++.++++++++|++|++++.| +++++++++.+|+
T Consensus 190 ~i~~~~~~~~~~l~i~~~Pv~vt~~~~~~g~~llvDPt~eEE~~~~~~ltvav~~~g~I~~i~k~G-~~~l~~e~i~~~i 268 (358)
T 2nn6_A 190 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSG-GIMLLKDQVLRCS 268 (358)
T ss_dssp BCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEES-CCCCCHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCC-CCCCCHHHHHHHH
T ss_conf 231342233300234468752379999339989979798999348962899990899899999158-9877999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999997720
Q gi|254780630|r 221 NLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 221 ~~a~~~~~~i~~~i~~~L~~~ 241 (242)
++|.+++++|+++|+++|+++
T Consensus 269 ~~A~~~~~~l~~~I~~aL~~d 289 (358)
T 2nn6_A 269 KIAGVKVAEITELILKALEND 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989
No 17
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=2.8e-45 Score=272.33 Aligned_cols=232 Identities=24% Similarity=0.294 Sum_probs=200.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|...+ ....+..+.+.+.+.+.|+....+...
T Consensus 29 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 103 (277)
T 2je6_A 29 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIVNVELLPLAYETFEPG---- 103 (277)
T ss_dssp BCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC-CTTCTTCCEEEEEEEECTTSCTTCCCS----
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCC-HHHCCCCCEEEEEEEECCCCCCCCCCC----
T ss_conf 879896998843749997988999879999979938988998676684-430787543776664044221115678----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf 477731023444432242100022--------004880222344203555763101000122210110010000014---
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDL--------SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--- 149 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~--- 149 (242)
....+...++..+++.+.+.... ..++.|++.++++++++||++++++++|+++||.|+++|+.....
T Consensus 104 -~~~~~~~~~~~~l~~~l~~~~~l~~~~l~i~~~~~~~~i~i~v~vl~~dG~~~~aai~a~~~AL~da~ip~~~~~~~~~ 182 (277)
T 2je6_A 104 -PPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGI 182 (277)
T ss_dssp -SCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC---C
T ss_pred -CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf -8741567776899875332002102113667775169999999996489987779999999999975865200234430
Q ss_pred -----CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf -----631011243783102004545541003343101234303688875998689999218636868999999999999
Q gi|254780630|r 150 -----KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 (242)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~ 224 (242)
......|+..++.++++...++.++.||+.+|+..+++.++++++.+++++.+++.| +++++++++.+|+++|.
T Consensus 183 ~~~~~~~~~~~pl~~~~~~vs~~~~~~~~~~D~~~~E~~~~~~~l~v~~~~~~~i~~l~~~g-~~~l~~~~l~~~i~~a~ 261 (277)
T 2je6_A 183 SVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 261 (277)
T ss_dssp EEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEES-SSCEEHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHHHHH
T ss_conf 12113422468855751589997665758874743445433866999997999899999168-88979999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999977
Q gi|254780630|r 225 DRIADLIKLQKDVIS 239 (242)
Q Consensus 225 ~~~~~i~~~i~~~L~ 239 (242)
+++++|+++|+++|.
T Consensus 262 ~~~~~l~~~l~~~L~ 276 (277)
T 2je6_A 262 STAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999857
No 18
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacterthermautotrophicus}
Probab=100.00 E-value=5.6e-45 Score=270.22 Aligned_cols=232 Identities=19% Similarity=0.306 Sum_probs=199.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|...+. ...+..+...+.....++....+..
T Consensus 24 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (271)
T 2wnr_A 24 ERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF-PDTPEMGVILTNSELLPMASPTFEP----- 97 (271)
T ss_dssp CCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCC-TTCTTCCEEEEEEEECGGGCTTCCC-----
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC-CCCCCCCEEEEEEEECCCCCCCCCC-----
T ss_conf 7799979888657499979778988489999689189999714667863-3467765378887623556667668-----
Q ss_pred CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCC-
Q ss_conf 477731023444432242--------10002200488022234420355576310100012221011001000001463-
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF- 151 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~- 151 (242)
++..++....++.+.+.+ ++.+....+++|++.++++++++||++++++++|+++||.++++|+.+...+.
T Consensus 98 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~I~i~v~vl~~DG~~~~a~i~A~~~AL~da~iP~~~~~~~~~ 177 (271)
T 2wnr_A 98 GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEV 177 (271)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 89975421777999999985220235761860468857999999997689997899999999999975898422456403
Q ss_pred ------CEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf ------10112437831020045455410033431012343036888759986899992186368689999999999999
Q gi|254780630|r 152 ------QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD 225 (242)
Q Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~ 225 (242)
....++..++..+.....++.++.||+.+|+..+++.++++++++|+++.+++.| +++++++++.+|+++|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpt~~Ee~~~~~~~~v~~~~~g~i~~i~~~g-~~~l~~~~l~~~~~~a~~ 256 (271)
T 2wnr_A 178 VINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGG-EGPLTRDDVLKAVSIAVE 256 (271)
T ss_dssp EEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEES-SSCBCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCEEEECCCCCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHHHHHH
T ss_conf 5304412456656763215530319987304534334126836999993899899999488-968799999999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999977
Q gi|254780630|r 226 RIADLIKLQKDVIS 239 (242)
Q Consensus 226 ~~~~i~~~i~~~L~ 239 (242)
+|++|+++++++|+
T Consensus 257 ~~~~l~~~~~~~L~ 270 (271)
T 2wnr_A 257 KVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998739
No 19
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.8e-45 Score=272.02 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=183.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
.|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|+||.+.++..+.+..+.+.+.+ .|++
T Consensus 4 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~v~~G~T~Vla~V~gp~~~~~~~~~~~~~~v~v~~--~~~~----------- 70 (246)
T 3hkm_A 4 SRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVW--KPMT----------- 70 (246)
T ss_dssp -CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEEE--ECSS-----------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEEECC--CCCC-----------
T ss_conf 879999999855869997988998769999989939999997785652235676541167502--5768-----------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 47773102344443224210002200488022234420355576310100012221011001000001463101124378
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGH 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~ 160 (242)
++...++.++++.+++++++.++...+|++.++++++++++||+++++++||+++||.+++|||. ++
T Consensus 71 g~~~~~~~~~~~~l~~~l~~~i~~~~~p~~~I~v~v~VL~~DG~~~~a~i~Aa~lAL~dagIpm~-------------~~ 137 (246)
T 3hkm_A 71 GQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLK-------------HL 137 (246)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBS-------------SC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC-------------CC
T ss_conf 99863678999989865121012024788699999999971898068889999999986799836-------------87
Q ss_pred CCEEECCCC-CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECC--------------CCCCCCHHHHHHHHHHHHH
Q ss_conf 310200454-5541003343101234303688875998689999218--------------6368689999999999999
Q gi|254780630|r 161 VAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSA--------------ERATFSQDHFFAMLNLAKD 225 (242)
Q Consensus 161 ~~~~~~~~~-~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g--------------~~~~~~~~~l~~~l~~a~~ 225 (242)
++++++++. ++.++.||+.+||..+.+.++++++..++.+.....+ ..|.++.+++.+|++.|++
T Consensus 138 v~av~v~~~~dg~~vlDPt~~Ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~G~~~~e~l~~~i~~a~~ 217 (246)
T 3hkm_A 138 AVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLA 217 (246)
T ss_dssp EEEEEEEECTTSCEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEEEECEEHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCEEECCCHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 68999999709929989699999507886799991899638876314333553100010010688799999999999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999977209
Q gi|254780630|r 226 RIADLIKLQKDVISNEV 242 (242)
Q Consensus 226 ~~~~i~~~i~~~L~~~~ 242 (242)
+|++|++++|++|++++
T Consensus 218 ~~~~l~~~~r~~l~~~~ 234 (246)
T 3hkm_A 218 ASSRISDFMRTTLQKQA 234 (246)
T ss_dssp HHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999997662
No 20
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-45 Score=274.20 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=189.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCC------------CCCCCCCCEEEEECCC
Q ss_conf 9678998011787999976632688289999689489999993332453101------------5543421100100555
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------------NTKHGWITAEYGMLPR 68 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||++.+.... .+..+.+.+++.+.|+
T Consensus 26 ~R~DGR~~~e~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 105 (272)
T 2nn6_F 26 EAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPF 105 (272)
T ss_dssp ---CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCC
T ss_conf 68999897774676999797788874799998992999997568768743347763200013356663699999963886
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCC
Q ss_conf 65322233344447773102344443224210002200488022234420355576310100012221011001000001
Q gi|254780630|r 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 (242)
Q Consensus 69 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~ 148 (242)
+...+... +...+...++..+.+++++.++...++++.+.++++++++||++++++++|+++||.|+++|+.+..
T Consensus 106 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~v~~~vl~~dg~~~~a~i~aa~lAL~dagi~~~~~v 180 (272)
T 2nn6_F 106 AGRRRRAP-----PGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV 180 (272)
T ss_dssp SSSSCCCS-----CCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSCC
T ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 64765477-----9972788988889876424566210787489998888537898488788889999986698630423
Q ss_pred CCCCEECCCCCCCCEEECC---CCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 4631011243783102004---54554100334310123430368887-5998689999218636868999999999999
Q gi|254780630|r 149 NKFQLSQVLKGHVAAISCG---MLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 (242)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~ 224 (242)
..+.+. ..++.+++||+.+||..+++.+++++ ++.+++|++++.|+ +.+ .+++.+|+++|.
T Consensus 181 -------------~~~~v~~~~~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~i~~l~~~g~-~~~-~e~l~~~l~~a~ 245 (272)
T 2nn6_F 181 -------------VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE-GGL-TESWAEAVRLGL 245 (272)
T ss_dssp -------------EEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECC-SSC-TTTTHHHHHHHH
T ss_pred -------------EEEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECCC-CCC-HHHHHHHHHHHH
T ss_conf -------------25799998325663237860767742675459999179998799993368-678-999999999999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999997720
Q gi|254780630|r 225 DRIADLIKLQKDVISNE 241 (242)
Q Consensus 225 ~~~~~i~~~i~~~L~~~ 241 (242)
++|++|+++|+++|+++
T Consensus 246 ~~~~~i~~~l~~~l~~~ 262 (272)
T 2nn6_F 246 EGCQRLYPVLQQSLVRA 262 (272)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998
No 21
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-45 Score=269.40 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=188.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++| +|+|||+|++|+|+|+|+|++|...|. ...++++.+.+.+.+.+++...+.......
T Consensus 23 ~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~ 98 (305)
T 2wp8_A 23 YRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPY-EDRPFEGLFVISTEISPMAGSQFENGNITG 98 (305)
T ss_dssp CCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CC-SSCTTCCEEEEEECCC--------------
T ss_pred CCCCCCCCCCCCCEEEEEC---CCCCEEEEEECCCEEEEEEECCCCCCH-HHCCCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 8899989988558499977---998189999689199999986655846-548996517898640676677768889996
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC------
Q ss_conf 4777310234444322----421000220048802223442035557631010001222101100100000146------
Q gi|254780630|r 81 GRQGGRSQEIQRMIGR----ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK------ 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~------ 150 (242)
.........+.+.+.+ .+.+.++...++.|.+.++++++++|||+++|+++|+.+||.++++|+......
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~~~l~i~~~~~~w~i~i~v~VL~~dG~~~da~~~A~~~AL~~~~iP~v~v~~~~~~~~~ 178 (305)
T 2wp8_A 99 EDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHP 178 (305)
T ss_dssp --------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSSCCBCC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEC
T ss_conf 03677888999876320112322234456774268899999976999888899999999999639982541156424513
Q ss_pred ----CCEECCCCCCCCEEECC--------------CCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf ----31011243783102004--------------545541003343101234303688875998689999218636868
Q gi|254780630|r 151 ----FQLSQVLKGHVAAISCG--------------MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212 (242)
Q Consensus 151 ----~~~~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~ 212 (242)
......+.+.+.++++. ..++.++.||+.+||..+++.++++++++|++|++++.| +.+++
T Consensus 179 ~~~~~~~~l~~~~~p~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~v~~~~~g~v~~~~~~g-~~~l~ 257 (305)
T 2wp8_A 179 VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAG-GLPMD 257 (305)
T ss_dssp SSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEEE-EEEEC
T ss_pred CCCCCCCCCCHHCCCEEEEEEECCCCCCEEEEEEEECCCEEEECCCHHHHHCCCCEEEEEECCCCCEEEEEECC-CCCCC
T ss_conf 54244555332127153489864788860799997238758716878888204844999986999899998068-88879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999997720
Q gi|254780630|r 213 QDHFFAMLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 213 ~~~l~~~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
.+++.+|+++|.++|++|+++++++|+++
T Consensus 258 ~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 286 (305)
T 2wp8_A 258 ALTLMKCCHEAYSIIEKITDQILQLLKED 286 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999878
No 22
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=3.4e-43 Score=260.37 Aligned_cols=222 Identities=22% Similarity=0.257 Sum_probs=195.4
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCC----CCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324----53101554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV----PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
.|.|||+++|+|||++++|++++++|||+|+.|+|+|+|+++++... +..-.....+.+.+.|+|+||+..++...
T Consensus 314 ~R~DgR~~~e~R~i~~~~~~lp~ahGSalf~rG~Tqvl~~~tl~~~~~~~~~~~~~~~~~~~~~~~YnfppfS~ge~~~~ 393 (549)
T 3gme_A 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV 393 (549)
T ss_dssp CCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCS
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 76423576753579999378998751689964894899999558876311110257651246899950278767775657
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
+....++...+.+.++++++.++...+++++|++++.+++.||+...|++|++++||+|||+||++.
T Consensus 394 ----~~~~rReighg~la~ral~~vv~~~~~~~~~Irv~~evl~sdGss~~Asi~~~slAL~dAGvp~k~~--------- 460 (549)
T 3gme_A 394 ----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAA--------- 460 (549)
T ss_dssp ----SCCCSSHHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSC---------
T ss_pred ----CCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC---------
T ss_conf ----8987107899999999987168843326748999999997587478889999999999759962023---------
Q ss_pred CCCCCCEEECCCC----CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4378310200454----554100334310123430368887599868999921863686899999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGML----CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK 232 (242)
Q Consensus 157 ~~~~~~~~~~~~~----~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~ 232 (242)
+++++++++ ++.++.|+...|+..++.++.++++.+| |+.+|+.++...|+.+.+.+++++|+++|.+|.+
T Consensus 461 ----Va~ia~Gli~~~~~~~il~Di~~~Ed~~gdmdf~va~t~~g-it~lQ~d~k~~g~~~~~~~~al~~a~~g~~~Il~ 535 (549)
T 3gme_A 461 ----VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 (549)
T ss_dssp ----CEEEEEEEEEETTEEEEEESCCHHHHHHSSEEEEEEECSSC-EEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----EEEEEEEEEECCCCCEEEECCCCCHHHCCCCCEEEEECCCC-EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----33999888973888358626994254447874688763677-4999984051797999999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999772
Q gi|254780630|r 233 LQKDVISN 240 (242)
Q Consensus 233 ~i~~~L~~ 240 (242)
.|+++|++
T Consensus 536 ~m~~~i~~ 543 (549)
T 3gme_A 536 VMEQAINA 543 (549)
T ss_dssp HHHHHCCS
T ss_pred HHHHHHHH
T ss_conf 99999864
No 23
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=6.6e-43 Score=258.78 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=181.9
Q ss_pred CCCCCCCC-CCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 96789980-11787999976632688289999689489999993332453101554342110010055565322233344
Q gi|254780630|r 1 MRLSGRQE-NQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAV 79 (242)
Q Consensus 1 iR~DGR~~-~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (242)
.|.|||++ .|+|||++++|++++|||||+|++|||+|+|+|+||++.++....++.+.+.+.+...+.
T Consensus 19 ~r~~~r~p~~elR~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gP~e~~~~~~~~~~~~~~v~~~~~~~----------- 87 (237)
T 2nn6_D 19 TGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIG----------- 87 (237)
T ss_dssp --------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECSSS-----------
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC-----------
T ss_conf 778999986621347999698899873799998998999999778566621036565204652444468-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 44777310234444322421000220048802223442035557631010001222101100100000146310112437
Q gi|254780630|r 80 SGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKG 159 (242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~ 159 (242)
.........+..+...+++.+++..+++|.+.++++++++||++++++++|+++||.++++|+. +
T Consensus 88 --~~~~~~~~~~~~l~~~l~~~i~l~~~~~~~i~i~v~vL~~dG~~~~a~i~a~~~AL~~a~ip~~-------------~ 152 (237)
T 2nn6_D 88 --LPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMR-------------A 152 (237)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCS-------------S
T ss_pred --CCCCCCHHHHHHHHHHHCCEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-------------C
T ss_conf --8996502278888753121550256764499999999505677428899989998643578754-------------6
Q ss_pred CCCEEECCCC-CCCCEECCCCCCCCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8310200454-5541003343101234303688875-9986899992186368689999999999999999999999999
Q gi|254780630|r 160 HVAAISCGML-CGYPIVDLDYGEDSTIDVDANFVMT-DSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 (242)
Q Consensus 160 ~~~~~~~~~~-~~~~~~d~~~~ee~~~~~~l~v~~~-~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 237 (242)
+++++++++. ++.++.||+.+||..+++.++++++ ..++++.+++.| .++++++.+|+++|.++|+++++++|++
T Consensus 153 ~~~av~v~~~~~g~~lvDPt~~Ee~~~~~~l~va~~~~~~~i~~~~~~G---~~~~~~l~~~i~~A~~~~~~l~~~i~~~ 229 (237)
T 2nn6_D 153 LFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKG---LYSDTELQQCLAAAQAASQHVFRFYRES 229 (237)
T ss_dssp CEEEEEEEECTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEE---SCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7653499998269778369989982077517999918999099999178---8399999999999999999999999999
Q ss_pred HHHCC
Q ss_conf 77209
Q gi|254780630|r 238 ISNEV 242 (242)
Q Consensus 238 L~~~~ 242 (242)
|+++.
T Consensus 230 l~~~~ 234 (237)
T 2nn6_D 230 LQRRY 234 (237)
T ss_dssp HHHHT
T ss_pred HHHHH
T ss_conf 99987
No 24
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAse; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=4.6e-41 Score=248.42 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=172.3
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 01178799997663268828999968948999999333245310155434211001005556532223334444777310
Q gi|254780630|r 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87 (242)
Q Consensus 8 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 87 (242)
.+|+|++++++|++++|||||+|++|||+|+|+|+||++.++....++.+.+.+. +.|.... .++
T Consensus 2 a~e~R~i~i~~g~l~~adGSa~v~~G~T~Vla~V~gP~e~~~~~~~~~~~~~~v~--~~~~~~~-------------~~~ 66 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDIS--YRANCGD-------------NKF 66 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCC--SSCCCC---------------CC
T ss_pred CCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEE--CCCCCCC-------------CCH
T ss_conf 8676555999797899987999999990999999658774810036887002243--2678999-------------647
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECC
Q ss_conf 23444432242100022004880222344203555763101000122210110010000014631011243783102004
Q gi|254780630|r 88 QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167 (242)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (242)
.++++.+++++++.+++..+|++.++++++++++||++++++++|+++||.++++|+. +++++++++
T Consensus 67 ~~~~~~l~~~l~~~i~~~~~p~~~i~v~v~vl~~dG~~~~a~i~aa~lAL~~agip~~-------------~~v~a~~~~ 133 (222)
T 3krn_A 67 NVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFE-------------TVFCGVLIV 133 (222)
T ss_dssp SSCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTT-------------SCCCCCCCE
T ss_pred HHHHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-------------CCCCEEEEE
T ss_conf 9999999757651018857698299999996466788317899989999996798633-------------575358999
Q ss_pred CCCCCCEECCCCCCCCCCCEEEEEEE----CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54554100334310123430368887----599868999921863686899999999999999999999999997720
Q gi|254780630|r 168 MLCGYPIVDLDYGEDSTIDVDANFVM----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 168 ~~~~~~~~d~~~~ee~~~~~~l~v~~----~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
+.++.++.||+.+|+..+++.+++++ +...++++++.. |.++++++.+|+++|+++|+++++++|++|+++
T Consensus 134 ~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~~~~i~~~~~~---G~~~~~~l~~~i~~a~~~~~~i~~~~k~~l~~~ 208 (222)
T 3krn_A 134 RVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAI---GHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp ECSSSEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCB---SSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEECCCHHHHHHCCCCEEEEEECCCCCCEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887868978898999617771799997899983199995057---882999999999999999999999999999986
No 25
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.1e-36 Score=223.75 Aligned_cols=226 Identities=20% Similarity=0.221 Sum_probs=190.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CC--CCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333--24--53101554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KV--PMWIRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
+|+|||+++|+|||++++|+++++||||+|+.|+|++||+++.-- +. ...-.......+...|+|+|||..+....
T Consensus 320 ~R~DGR~~dEIRpIs~EvgvLPr~HGSaLFtRGETQaL~~~TLG~~~d~Q~iD~l~g~~~krFmlHYNFPPfSVGE~~~~ 399 (723)
T 3cdi_A 320 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV 399 (723)
T ss_dssp CCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 57677775511334666375776566613855894699998138873332002268774116999737899877887778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
+.. ..|++-...+-+++|.+.++....+...|++...+++.||+...|+++++++||+|||+|+.....++..++.
T Consensus 400 ~~p----~RREIGHG~LAerAL~~vlP~~~~FPytIRvvSEileSNGSSSmAsVCg~sLALmdAGVPik~~VAGIAmGLi 475 (723)
T 3cdi_A 400 GSP----KRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 475 (723)
T ss_dssp ---------CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEE
T ss_pred CCC----CCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 888----7441247899998763468874569968886411332688730488888878887579965674005766667
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
... .+..++.|..-.|...+|+++-++++.+| |+.+||..+-..++.+.|.++++.|+++...|.+.|++
T Consensus 476 ~~~---------d~~~iLtDI~G~ED~~GDMDFKvaGT~~G-ITa~QmDiKi~Gi~~~il~~al~qA~~gr~~il~~m~~ 545 (723)
T 3cdi_A 476 KEG---------DNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 545 (723)
T ss_dssp EET---------TEEEEESSCCGGGGGGCSEEEEEEECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECC---------CCEEEEEECCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 607---------83799943144434446665037743664-23056411037869999999999999999999999997
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
+|..
T Consensus 546 ~i~~ 549 (723)
T 3cdi_A 546 AINA 549 (723)
T ss_dssp HCC-
T ss_pred HHCC
T ss_conf 5066
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=6.1e-36 Score=219.67 Aligned_cols=230 Identities=16% Similarity=0.160 Sum_probs=191.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCC----CCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333245----3101554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP----MWIRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
+|+|||+++|+|||++++|+++++||||+|+.|+|++||+++...... ..........+...|+|+|||..+....
T Consensus 355 ~RiDGR~~dEIRPIs~EvgvLPrvHGSALFtRGETQaL~v~TLG~~~d~Q~iD~l~~~~~krFmLHYNFPPfSVGE~~r~ 434 (757)
T 1e3p_A 355 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRV 434 (757)
T ss_dssp BCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCCCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 77687665534012334586456651247773384699997568752544212357851688999833688757876678
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
.. +..|++-...+-++++.+.++....+...|.+...+++.+|+...|+++++++||+|||+|+++...+...++.
T Consensus 435 g~----p~RREIGHG~LAerAL~pviP~~~~FpytIRvvseileSnGSssmAsvc~~sLALmdAGVPik~~VagiAmGli 510 (757)
T 1e3p_A 435 GS----PKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLI 510 (757)
T ss_dssp SS----CCHHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEE
T ss_pred CC----CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEE
T ss_conf 88----54045566788999986228863359946999999826276523289999999988669974443001001101
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
.... .....+.++.|..-.|...+++++.++++.+| |+.+||..+-..++.+.|.++++.|+.+...|.+.|++
T Consensus 511 ~~~~-----~~~~~~~iLtDI~G~ED~~GDMDFKvaGt~~G-ITalQmDiKi~Gi~~~il~eAl~qAk~~r~~Il~~m~~ 584 (757)
T 1e3p_A 511 SQEI-----NGETHYVALTDILGAEDAFGDMDFKVAGTKEF-VTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEES-----SSCEEEEEEESCCHHHHHHCSEEEEEEECSSS-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCC-----CCCCCEEEEEECCCCCCCCCCCCEEEECCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2047-----88640589850556643347753278567685-68776543146887899999999999999999999886
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
+|..
T Consensus 585 ~i~~ 588 (757)
T 1e3p_A 585 AIDT 588 (757)
T ss_dssp HCSS
T ss_pred HCCC
T ss_conf 5258
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=2.5e-29 Score=182.53 Aligned_cols=211 Identities=17% Similarity=0.220 Sum_probs=180.4
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 787999976-6326882899996894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
-|.|+++|| +.+|||||+.++.|+|.|||+|....+.+. ..+...+.++|.--.++....+ ++...++++.+++.
T Consensus 19 g~~l~~etGklAkqA~GsV~v~~GdT~VL~Tvv~~~~~~~---~~DFfPLtVdY~EK~yAaGkIPGgF~KREgrpse~Ei 95 (723)
T 3cdi_A 19 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCS---SCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred CEEEEEECCHHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 9889997562154168449999899799999970478889---9897786563475533178777866466889981255
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
+.+++++|.++|+++..+..++|+.+.|+..|.+......+++|+++||.-+ ++|+..|..++.+++
T Consensus 96 L~sRlIDRpiRPLFP~gf~~EtQIi~tVLS~D~~~dpDvlAi~aASaAL~iS-------------dIPf~GPVaaVRVG~ 162 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS-------------GIPFNGPIGAARVGY 162 (723)
T ss_dssp HHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHH-------------TSSCCCCCCCEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH-------------CCCCCCCCEEEEEEE
T ss_conf 6677516775567767788671899999866988890788999999999861-------------899778604789999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
.++.++.+|+.+|...++.+|+++.+.+ .|++|+..++ .+++++|.+++..|++.++++.++|++..++
T Consensus 163 idge~ViNPT~~ele~S~LDLvVAGT~d-aI~MVE~~A~--EvsEe~mleAI~~ahe~iq~iI~~q~eL~~~ 231 (723)
T 3cdi_A 163 INDQYVLNPTQDELKESKLDLVVAGTEA-AVLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINELVKE 231 (723)
T ss_dssp ETTEEEESCCTTGGGGCSEEEEEEECSS-CEEEEEEEEE--EECHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHHCCCEEEEEEECCC-EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8786781879789830836899995377-1899834675--5799999999998889999999999999998
No 28
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=2.5e-29 Score=182.54 Aligned_cols=211 Identities=17% Similarity=0.222 Sum_probs=179.7
Q ss_pred EEEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 787999976-6326882899996894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 11 MREISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 11 ~R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
-|.|+++|| +.+|||||+.++.|+|.|||+|....+.+. ..+...+.++|.--.++....+ ++...++++.++++
T Consensus 13 ~~~i~~etG~lAkqA~Gsv~~~~G~T~vL~T~~~~~~~~~---~~dFfPLtVdY~Ek~yAaGkIPGgf~kREgrpse~Ei 89 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 89 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCT---TCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHHH
T ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEEEEEECCCCCC---CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 9889998570143178339999899799999970588889---9887675576788323378688866567889870055
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
+.+++++|.++|.++..++.++++.+.|+..+.+......+++++++||..+ ++|+..|..++.+++
T Consensus 90 L~sRlIDRpiRPLFp~g~~~e~Qii~tVLS~D~~~~pdvlAi~gASaAL~iS-------------dIPf~GPvaaVRVG~ 156 (549)
T 3gme_A 90 LIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS-------------GIPFNGPIGAARVGY 156 (549)
T ss_dssp HHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHH-------------CSCCCCCCEEEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------------CCCCCCCCCEEEEEE
T ss_conf 6667528876467777786550999999976999884699999999999852-------------899678510049999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759986899992186368689999999999999999999999999772
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISN 240 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~ 240 (242)
+++.++.+|+.+|.+.++.+|+++++.+ .|++|+..++ .+++++|.+++..|++.++++.++|++..++
T Consensus 157 idge~ViNPt~~qle~SdLDLvVAGT~d-aVlMVE~~A~--EvsEe~ml~AI~~ahe~iq~ii~~q~el~~~ 225 (549)
T 3gme_A 157 INDQYVLNPTQDELKESKLDLVVAGTEA-AVLMVESEAE--LLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 (549)
T ss_dssp ETTEEEESCCTTTTTTCSBCEEEEECSS-CEEEEEEEEE--EECHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHHCCCEEEEEEECCC-HHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8886896889889830744699996124-4340032575--4689999999999999999999999999997
No 29
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.95 E-value=6e-27 Score=169.15 Aligned_cols=212 Identities=18% Similarity=0.128 Sum_probs=176.7
Q ss_pred EEEEEEEC-CCCCCCCEEEEEE-CCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 87999976-6326882899996-894899999933324531015543421100100555653222-33344447773102
Q gi|254780630|r 12 REISLTRR-VSKYAEGSCLVKF-GDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRV-KREAVSGRQGGRSQ 88 (242)
Q Consensus 12 R~i~i~~g-~~~~a~GSa~v~~-G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~ 88 (242)
|+|+++|| +.+||+||+.+++ |+|.|+|+|....+.+. ..+...+.++|.--.++....+ ++...++++.++++
T Consensus 37 r~l~~EtGklAkqA~GSvvv~~~G~TvvL~Tv~~~~~~~~---~~DF~PLtVdY~EK~yAaGKIPGgF~KREGrpsd~Ei 113 (757)
T 1e3p_A 37 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKD---QLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAI 113 (757)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECT---TCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHHH
T ss_pred EEEEEECCCHHHCCCCEEEEEECCCEEEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 4799974610201784499998897899999953578889---9997530698988011277677877477889981365
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCC
Q ss_conf 34444322421000220048802223442035557631010001222101100100000146310112437831020045
Q gi|254780630|r 89 EIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGM 168 (242)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (242)
+.+|+++|.++|+++..++..+|+.+.|+.++.+......+++|+++||..+ ++|+..|..++.++.
T Consensus 114 L~sRLIDRplRPLFPkgf~~EtQIi~tVLS~D~~~~pDvlAi~aASAAL~iS-------------dIPf~GPVaaVRVG~ 180 (757)
T 1e3p_A 114 LTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLA-------------GLPFSGPIGGVRVAL 180 (757)
T ss_dssp HHHHHHHHHHGGGBCTTBCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHT-------------TSSBCCCCEEEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH-------------CCCCCCCEEEEEEEE
T ss_conf 7778756765467776788761899999983899890688999999999864-------------899789626899999
Q ss_pred CCCCCEECCCCCCCCCCCEEEEEEECC----CCCEEEEEECCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 455410033431012343036888759----98689999218636----------8689999999999999999999999
Q gi|254780630|r 169 LCGYPIVDLDYGEDSTIDVDANFVMTD----SGHIVEVQGSAERA----------TFSQDHFFAMLNLAKDRIADLIKLQ 234 (242)
Q Consensus 169 ~~~~~~~d~~~~ee~~~~~~l~v~~~~----~~~i~~i~~~g~~~----------~~~~~~l~~~l~~a~~~~~~i~~~i 234 (242)
.++.++++|+.+|...++.+|.++++. ...|.+++..+.+. .++++++.++++.|++.++++.+++
T Consensus 181 idGefViNPT~eele~S~LDLvVAGT~~~~~~~aI~MVEa~a~e~s~~mve~ga~~vsEe~m~~Ai~~a~~~Ik~ii~~q 260 (757)
T 1e3p_A 181 IRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQ 260 (757)
T ss_dssp ETTEEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEECCCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989978983331126212577313355522566666520440057777644311239999999999868899999999
Q ss_pred HHHHH
Q ss_conf 99977
Q gi|254780630|r 235 KDVIS 239 (242)
Q Consensus 235 ~~~L~ 239 (242)
++..+
T Consensus 261 ~el~~ 265 (757)
T 1e3p_A 261 ADLAA 265 (757)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 30
>2kj3_A Small S protein, HET-S; beta-solenoid, prion, amyloid fibril, parall sheets, hydrophobic core, salt bridges, asparagine ladders, helix; NMR {Podospora anserina} PDB: 2rnm_A
Probab=35.99 E-value=13 Score=15.61 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=4.8
Q ss_pred CEEEEEECCC
Q ss_conf 2899996894
Q gi|254780630|r 26 GSCLVKFGDT 35 (242)
Q Consensus 26 GSa~v~~G~T 35 (242)
+++.+++||+
T Consensus 19 e~ar~~iGN~ 28 (79)
T 2kj3_A 19 ERARVQLGNV 28 (79)
T ss_dssp SSCEEEEEEE
T ss_pred CCEEEEECCH
T ss_conf 5304882414
Done!