PSIBLAST alignment of GI: 254780630 and protein with PDB id: 1udn

gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus Length = 255

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/236 (48%), Positives = 157/236 (66%), Gaps = 2/236 (0%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
           MR  GR+E+Q+R +S+ R   +Y EGSCL+ FG T ++ TA++ E VP W++    GWIT
Sbjct: 1   MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
           AEY MLPR+T  R  RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61  AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           ADGGTRTAAITGA+VA+ D +  +            +K  VAA+S G++    ++DL++ 
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKE--GIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178

Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236
           EDS   VD N V T SG + EV    E  +F++D    ML+LA+  I +LI+LQK 
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234