RPSBLAST alignment of GI: 254780630 and protein with PDBid: 1udn
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255
Score = 156 bits (395), Expect = 4e-39
Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 2/239 (0%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWIT
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQ
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
ADGGTRTAAITGA+VA+ D + + +K VAA+S G++ ++DL++
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHK--EGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 181 EDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
EDS VD N V T SG + EV E +F++D ML+LA+ I +LI+LQK +
Sbjct: 179 EDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYV 237