RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2ba0

>2ba0_I Archeal exosome RNA binding protein RRP42; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: d.14.1.4 d.101.1.1 PDB: 2ba1_H Length = 259

 Score =  122 bits (307), Expect = 6e-29
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 5/240 (2%)

Query: 1   MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
            R+ GR  ++ R++ +   V + AEGS LVK GDT ++    ++     +      G I 
Sbjct: 22  ERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPG-EPYPDTPDRGVII 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRS---QEIQRMIGRALRSVVDLSALGSRQIIIDCD 117
               ++P ++                    + I+      L  +V         + +D  
Sbjct: 81  VNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIH 140

Query: 118 VIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDL 177
            +  DG    A+   A  AL +     E           ++    +++  ++    +VD 
Sbjct: 141 ALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKYLVDP 200

Query: 178 DYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237
              E S  D           ++V +Q S       +  F  +L+++ +    L +  K++
Sbjct: 201 SREEMSVGDTTLTITTDKDDNVVAMQKSGG-YLLDEKLFDELLDVSINCARKLREKFKEI 259