RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2je6

>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* Length = 250
 Score =  105 bits (261), Expect = 1e-23
 Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 2   RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
           R  GR+ +++R I +   V K A+GS + + G+T  +      +E  P  +       + 
Sbjct: 21  RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80

Query: 61  AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
             Y M P ST  R            R  E+ ++I  AL S V +       I +  +++Q
Sbjct: 81  VRYHMTPFSTDERKNP-----APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 135

Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
           AD G+R  ++  A +AL D    M D              +A ++ G   G  I+DL+  
Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182

Query: 181 EDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
           E    + D    M  S + +   Q +    + + D F    +LA   I  +  L+++ + 
Sbjct: 183 EAMWGEADMPIAMMPSLNQVTLFQLN---GSMTPDEFRQAFDLAVKGINIIYNLEREALK 239

Query: 240 N 240
           +
Sbjct: 240 S 240