RPSBLAST alignment of GI: 254780630 and protein with PDBid: 2je6
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* Length = 250
Score = 105 bits (261), Expect = 1e-23
Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATL-EEKVPMWIRNTKHGWIT 60
R GR+ +++R I + V K A+GS + + G+T + +E P + +
Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R R E+ ++I AL S V + I + +++Q
Sbjct: 81 VRYHMTPFSTDERKNP-----APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 135
Query: 121 ADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGMLCGYPIVDLDYG 180
AD G+R ++ A +AL D M D +A ++ G G I+DL+
Sbjct: 136 ADAGSRLVSLMAASLALADAGIPMRDL-------------IAGVAVGKADGVIILDLNET 182
Query: 181 EDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239
E + D M S + + Q + + + D F +LA I + L+++ +
Sbjct: 183 EAMWGEADMPIAMMPSLNQVTLFQLN---GSMTPDEFRQAFDLAVKGINIIYNLEREALK 239
Query: 240 N 240
+
Sbjct: 240 S 240