RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus
Liberibacter asiaticus str. psy62]
(242 letters)
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 151
Score = 113 bits (282), Expect = 2e-26
Identities = 85/143 (59%), Positives = 108/143 (75%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R SGR +Q+R I +TR +K+AEGS LV+FGDT ++ T + E VP +++ GW+TA
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTA 62
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EYGMLPRSTG R +REA G+QGGR+ EIQR+IGR+LR+ +DLS LG + IDCDVIQA
Sbjct: 63 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 122
Query: 122 DGGTRTAAITGAWVALHDCLQHM 144
DGGTRTA+ITGA VAL D L +
Sbjct: 123 DGGTRTASITGATVALIDALAVL 145
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 111 bits (278), Expect = 6e-26
Identities = 71/144 (49%), Positives = 101/144 (70%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
MR GRQ +++R I+ + EGS L+ G+T ++ A++E++VP ++R GWIT
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
AEY MLP++T + +E+ G+ GR+ EIQR+IGRALR+VVDL LG R I IDCDVIQ
Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 121 ADGGTRTAAITGAWVALHDCLQHM 144
ADGGTRTA+ITGA++A+ + +
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKL 144
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 105 bits (262), Expect = 4e-24
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKV-PMWIRNTKHGWIT 60
R GR+ +++R I + V K A+GS + + G+T + +++ P + +
Sbjct: 12 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 71
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQ 120
Y M P ST R R E+ ++I AL S V + I + +++Q
Sbjct: 72 VRYHMTPFSTDERKNP-----APSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQ 126
Query: 121 ADGGTRTAAITGAWVALHDC 140
AD G+R ++ A +AL D
Sbjct: 127 ADAGSRLVSLMAASLALADA 146
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 104 bits (261), Expect = 6e-24
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 14/147 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R+ GR R + + V GS VK G T +L E P + + G++
Sbjct: 18 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNE-GYLE 76
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSV--VDLSALG------SRQI 112
+T R EI + R + VDL L +
Sbjct: 77 FFVDCSASATPEFEGR-----GGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVL 131
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139
+D +++ G A AL +
Sbjct: 132 YVDVLLLECGGNLFDAISIAVKAALFN 158
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 104 bits (260), Expect = 8e-24
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R+ GR ++ R++ + V + AEGS LVK GDT ++ ++ P + G I
Sbjct: 20 ERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDR-GVII 78
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGSR------QI 112
++P ++ G S E+ R++ R +R VDLS L +
Sbjct: 79 VNAELVPLASPTF-----EPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIV 133
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140
+D + DG A+ A AL +
Sbjct: 134 FVDIHALDDDGNLLDASALAAIAALMNT 161
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
aeolicus [TaxId: 63363]}
Length = 149
Score = 102 bits (254), Expect = 4e-23
Identities = 80/145 (55%), Positives = 106/145 (73%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
R GR+E+Q+R +S+ R +Y EGSCL+ FG T ++ TA++ E VP W++ GWITA
Sbjct: 1 RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITA 60
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
EY MLPR+T R RE+V GR GGR+ EIQRMIGRA+R+ V+L+ +G R I +DCDVIQA
Sbjct: 61 EYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQA 120
Query: 122 DGGTRTAAITGAWVALHDCLQHMED 146
DGGT TAAITGA+VA+ D + +
Sbjct: 121 DGGTATAAITGAFVAVADAIIKLHK 145
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 100 bits (250), Expect = 9e-23
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 14/147 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
R GR+ + R ++ A+GS LVK G+T ++ E P K G++
Sbjct: 16 CRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDK-GYVV 74
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQI 112
+ P + G +Q + I + + + +
Sbjct: 75 PNVDLPPLCSSRFRSG-----PPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVL 129
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHD 139
D + DG A AL +
Sbjct: 130 YCDLICLDYDGNILDACTFALLAALKN 156
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 137
Score = 100 bits (249), Expect = 1e-22
Identities = 21/130 (16%), Positives = 41/130 (31%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+R ++ GS L + G+T +L TL +T Y
Sbjct: 2 DIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNF 61
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
V G R + RA+ V+ I + + ++G T +
Sbjct: 62 PPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGS 121
Query: 130 ITGAWVALHD 139
+ + ++L +
Sbjct: 122 VCASTMSLLN 131
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 95.3 bits (236), Expect = 4e-21
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPM-WIRNTKHGWI 59
+RL GR+ +++R I + V K A+GSC ++ G ++ +V +++ I
Sbjct: 7 LRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAII 66
Query: 60 TAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVI 119
Y M P S R + RS EI ++ A +V+ I I +V+
Sbjct: 67 RYRYNMAPFSVEERKRP-----GPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 121
Query: 120 QADGGTRTAAITGAWVALHDC 140
QAD G+RTA + A VAL D
Sbjct: 122 QADAGSRTACLNAASVALVDA 142
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 92.3 bits (228), Expect = 3e-20
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVP--MWIRNTKHGW 58
R+ GR+ ++R+I V A+GS ++ G+T L ++
Sbjct: 6 YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRAL 65
Query: 59 ITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDV 118
+ +Y STG R +R +S E+ + + + + QI I V
Sbjct: 66 VNCQYSSATFSTGERKRR----PHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 121
Query: 119 IQADGGTRTAAITGAWVALHDC 140
+QADGGT A + A +A+ D
Sbjct: 122 LQADGGTYAACVNAATLAVLDA 143
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 90.3 bits (223), Expect = 1e-19
Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 17/148 (11%)
Query: 5 GRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTAT------------LEEKVPMWIR 52
R ++R + + A+GS ++ G T +L +
Sbjct: 2 TRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAP 61
Query: 53 NTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQI 112
G + ++ P + R G +E+ + AL V L Q+
Sbjct: 62 AALRGRLLCDFRRAPFAGRRRRAP-----PGGCEERELALALQEALEPAVRLGRYPRAQL 116
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140
+ +++ G AA+T A +AL D
Sbjct: 117 EVSALLLEDGGSALAAALTAAALALADA 144
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 89.8 bits (222), Expect = 2e-19
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 13/130 (10%)
Query: 10 QMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRS 69
+R + + + +GS GDT +L +V + +
Sbjct: 3 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVS---------KEIFNKATLE 53
Query: 70 TGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAA 129
R K G G + +R+I +VV + I + V+ G
Sbjct: 54 VILRPKI----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 109
Query: 130 ITGAWVALHD 139
+ A +AL D
Sbjct: 110 LNAACMALVD 119
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 86.7 bits (214), Expect = 2e-18
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 2 RLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITA 61
RL GRQ R I ++ G C+V+ G T +L + E P R T+ +
Sbjct: 23 RLDGRQTYDYRNIRISF---GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG-ILFF 78
Query: 62 EYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--VVDLSALGS------RQII 113
+ + GRQ ++ R++ R LR+ +D +L QI
Sbjct: 79 NLELSQMAA-----PAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIR 133
Query: 114 IDCDVIQADGGTRTAAITGAWVALHD 139
+D ++ DG AA A VAL
Sbjct: 134 VDLHLLNHDGNIIDAASIAAIVALCH 159
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 85.3 bits (210), Expect = 4e-18
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
Query: 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWIT 60
+R GR+ R +S+T +K A+GS LVK G T +L LE P + I
Sbjct: 27 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIV 86
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRS--------VVDLSALGSRQI 112
+ P + + E+ R++ R+LR +V +
Sbjct: 87 NVELL-PLAYETFEPG-----PPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTV 140
Query: 113 IIDCDVIQADGGTRTAAITGAWVALHDC 140
+D V+ G A + AL++
Sbjct: 141 WLDVYVLDYGGNVLDACTLASVAALYNT 168
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex
aeolicus [TaxId: 63363]}
Length = 105
Score = 82.3 bits (203), Expect = 3e-17
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
+K VAA+S G++ ++DL++ EDS VD N V T SG + EV E +F++D
Sbjct: 5 IKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDEL 64
Query: 217 FAMLNLAKDRIADLIKLQKDVISNEV 242
ML+LA+ I +LI+LQK + +
Sbjct: 65 IKMLDLAQKGINELIELQKKLYVIQD 90
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 79
Score = 81.4 bits (201), Expect = 7e-17
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
++ +++ ++ +VD E S D ++V +Q + + F
Sbjct: 2 VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQK-SGGYLLDEKLF 60
Query: 217 FAMLNLAKDRIADLIKLQK 235
+L+++ + L + K
Sbjct: 61 DELLDVSINCARKLREKFK 79
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 88
Score = 78.5 bits (193), Expect = 5e-16
Identities = 39/83 (46%), Positives = 54/83 (65%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
LK VAA+S G+ G P++DLDY EDS + D N VMTD+G +EVQG+AE A F
Sbjct: 5 LKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAEL 64
Query: 217 FAMLNLAKDRIADLIKLQKDVIS 239
AML LA+ + +L +LQ+ ++
Sbjct: 65 NAMLELAQQGMQELFELQRAALA 87
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 78.3 bits (193), Expect = 5e-16
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 157 LKGHVAAISCGMLCG-YPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
++ H A S + IVD E+ VM + G + + + +
Sbjct: 2 IRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGG-SGLTGAK 60
Query: 216 FFAMLNLAKDRIADLIKLQKDVISNE 241
++ A R ++ KL +VI +
Sbjct: 61 LQDCMSRAVTRHKEVKKLMDEVIKSM 86
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus
subtilis [TaxId: 1423]}
Length = 86
Score = 76.5 bits (188), Expect = 2e-15
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 157 LKGHVAAISCGMLCGYPI-VDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
+ +AAIS G+ I +DL+Y EDS+ +VD N +MT SG VE+QG+ E ATFS++
Sbjct: 4 ITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSRED 63
Query: 216 FFAMLNLAKDRIADLIKLQKDVI 238
+L LA+ I +LI QK+V+
Sbjct: 64 LNGLLGLAEKGIQELIDKQKEVL 86
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 149
Score = 72.1 bits (176), Expect = 4e-14
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 12 REISL-TRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRST 70
R I T R+++ A GS + D ++ +AT K P + + +
Sbjct: 18 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDF-FPLTVDVEERMYAAG 76
Query: 71 GNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAI 130
GR + R+I R LR Q++ + D AI
Sbjct: 77 KIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAI 136
Query: 131 TGAWVALHD 139
A +
Sbjct: 137 NAASASTQL 145
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 70.0 bits (171), Expect = 2e-13
Identities = 8/87 (9%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 157 LKGHVAAISCGMLC-GYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDH 215
++ ++C + G ++D ++ F + ++ S+ + +S
Sbjct: 2 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVER--KLLMSSTKGLYSDTE 59
Query: 216 FFAMLNLAKDRIADLIKLQKDVISNEV 242
L A+ + + ++ +
Sbjct: 60 LQQCLAAAQAASQHVFRFYRESLQRRY 86
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 69.5 bits (170), Expect = 3e-13
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 157 LKGHVAAISCGML--CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQD 214
+ +S Y +VD + E+ +D M I +Q S +D
Sbjct: 3 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGG-IMLLKD 61
Query: 215 HFFAMLNLAKDRIADLIKLQKDVISNE 241
+A ++A++ +L + N+
Sbjct: 62 QVLRCSKIAGVKVAEITELILKALEND 88
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 84
Score = 68.4 bits (167), Expect = 5e-13
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
L V IS + Y +VD D E+S +D +F T IV +Q S + + S
Sbjct: 2 LNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKG-SMSLQDI 60
Query: 217 FAMLNLAKDRIADLIKLQKDVI 238
N A+ L++ K +
Sbjct: 61 DQAENTARSTAVKLLEELKKHL 82
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 68.0 bits (166), Expect = 7e-13
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHF 216
++ ++ + +VD E++ +T G + ++ + + +
Sbjct: 3 VENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKG-SLDPESI 61
Query: 217 FAMLNLAKDRIADLIKLQKDVISNE 241
F M+ K L + V+ E
Sbjct: 62 FEMMETGKRVGKVLHASLQSVVHKE 86
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 86
Score = 66.5 bits (162), Expect = 2e-12
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDS-GHIVEVQGSAERATFSQDH 215
++ +A ++ G G I+DL+ E + D M S + Q + + + D
Sbjct: 2 MRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLN---GSMTPDE 58
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
F +LA I + L+++ + +
Sbjct: 59 FRQAFDLAVKGINIIYNLEREALKS 83
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 99
Score = 61.6 bits (149), Expect = 6e-11
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGH-IVEVQGSAERATFSQDH 215
+KG + +++ G G ++D ED+ + D F I + ++D
Sbjct: 2 MKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDE 61
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+ LAK + ++Q++ I
Sbjct: 62 VKQAIELAKKGALQIYEMQREAILR 86
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.9 bits (142), Expect = 3e-10
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFSQDH 215
++ V A S G + G + DL + E++ ++ SG I ++ A +DH
Sbjct: 2 MRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDAR---LHEDH 58
Query: 216 FFAMLNLAKDRIADLIKLQKDVISN 240
+L A D+ L V+
Sbjct: 59 LERVLEAAAQAARDVHTLLDRVVRQ 83
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 55.0 bits (132), Expect = 5e-09
Identities = 9/87 (10%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 157 LKGHVAAISCGM---LCGYPIVDLDYGEDSTIDVDANF-VMTDSGHIVEVQGSAERATFS 212
+ V + ++D E+ +M + + GS E
Sbjct: 1 MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEG--GL 58
Query: 213 QDHFFAMLNLAKDRIADLIKLQKDVIS 239
+ + + L + L + + +
Sbjct: 59 TESWAEAVRLGLEGCQRLYPVLQQSLV 85
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 25.3 bits (54), Expect = 5.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 212 SQDHFFAMLNLAKDRIADLIKLQK 235
S F M++ A + A+++K Q
Sbjct: 32 SLKTAFEMVDAAYNAGAEVVKHQT 55
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 25.0 bits (53), Expect = 6.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 61 AEYGMLPRSTGNRVKREAVSGRQGGRSQEIQRM-IGRAL 98
G + R R+A G + E++R+ IGRA
Sbjct: 110 GGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.393
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,864
Number of extensions: 38054
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 33
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)