Query gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:58:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780631.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2q2r_A Glucokinase 1, putativ 18.3 23 0.00068 17.7 -0.6 14 37-50 17-30 (63)
2 >1b43_A Protein (FEN-1); nucle 10.7 48 0.0014 16.0 -0.6 17 1-17 21-37 (77)
3 >2izo_A FEN1, flap structure-s 8.6 62 0.0018 15.5 -0.7 17 1-17 11-27 (82)
4 >1a76_A Flap endonuclease-1 pr 7.9 78 0.0023 15.0 -0.5 17 1-17 11-27 (65)
5 >1v54_D Cytochrome C oxidase s 6.3 1.9E+02 0.0055 13.1 0.8 13 30-42 19-31 (40)
6 >1cqq_A Type 2 rhinovirus 3C p 5.7 2.2E+02 0.0066 12.7 0.9 30 4-33 43-72 (77)
7 >1vd0_A Head decoration protei 5.7 1.5E+02 0.0044 13.6 0.0 14 25-38 91-104 (109)
8 >2np2_A HBB; protein-DNA compl 5.5 2.6E+02 0.0077 12.4 2.2 21 36-56 17-38 (56)
9 >1x9p_A Penton protein; jellyr 5.4 2.1E+02 0.0062 12.8 0.6 22 30-51 127-150 (295)
10 >3gbx_A Serine hydroxymethyltr 5.0 2.8E+02 0.0084 12.2 1.6 25 9-43 93-117 (175)
No 1
>>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} (A:242-304)
Probab=18.26 E-value=23 Score=17.66 Aligned_cols=14 Identities=50% Similarity=0.964 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 75455776678735
Q gi|254780631|r 37 GRSSRNPCQGGDIK 50 (62)
Q Consensus 37 grssrnpcqggdik 50 (62)
-|.||.||..|.|.
T Consensus 17 vrgsrppcsageia 30 (63)
T 2q2r_A 17 VRGSRPPCSAGEIA 30 (63)
T ss_dssp HTTSSCCCCHHHHH
T ss_pred HHCCCCCCCHHHHH
T ss_conf 52057667778889
No 2
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=10.72 E-value=48 Score=16.03 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=11.2
Q ss_pred CCCCCCCCCHHHHCCCE
Q ss_conf 97530000023332833
Q gi|254780631|r 1 MSGCSDNIDREHKAGIE 17 (62)
Q Consensus 1 msgcsdnidrehkagie 17 (62)
++||+|||.--..-|..
T Consensus 21 L~G~d~ni~GV~GiG~k 37 (77)
T 1b43_A 21 LVGTDYNPGGIKGIGLK 37 (77)
T ss_dssp HHCCTTSTTCSTTCCHH
T ss_pred HCCCCCCCCCCCCCCHH
T ss_conf 72866565658962499
No 3
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:219-300)
Probab=8.62 E-value=62 Score=15.48 Aligned_cols=17 Identities=29% Similarity=0.263 Sum_probs=11.4
Q ss_pred CCCCCCCCCHHHHCCCE
Q ss_conf 97530000023332833
Q gi|254780631|r 1 MSGCSDNIDREHKAGIE 17 (62)
Q Consensus 1 msgcsdnidrehkagie 17 (62)
++||||||.--..-|+.
T Consensus 11 L~G~d~ni~GV~GiG~k 27 (82)
T 2izo_A 11 LIGTDYNPDGIRGIGPE 27 (82)
T ss_dssp HHCCSSSTTCSTTCCHH
T ss_pred HCCCCCCCCCCCCCCHH
T ss_conf 62886543347994488
No 4
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274)
Probab=7.93 E-value=78 Score=14.98 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=11.0
Q ss_pred CCCCCCCCCHHHHCCCE
Q ss_conf 97530000023332833
Q gi|254780631|r 1 MSGCSDNIDREHKAGIE 17 (62)
Q Consensus 1 msgcsdnidrehkagie 17 (62)
++||||||.--..-|..
T Consensus 11 L~G~d~nipGV~GIGpK 27 (65)
T 1a76_A 11 FMGTDYNPGGVKGIGFK 27 (65)
T ss_dssp HHCCTTSTTTTTTCCHH
T ss_pred HCCCCCCCCCCCCEEHH
T ss_conf 56975565556856299
No 5
>>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:108-147)
Probab=6.28 E-value=1.9e+02 Score=13.09 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0027334754557
Q gi|254780631|r 30 KKRNPFQGRSSRN 42 (62)
Q Consensus 30 kkrnpfqgrssrn 42 (62)
-+-||.||-||.=
T Consensus 19 m~~nPi~G~sskW 31 (40)
T 1v54_D 19 MKVAPIQGFSAKW 31 (40)
T ss_dssp TTSSTTTTSGGGE
T ss_pred CCCCCCCCCCCCC
T ss_conf 4899987720001
No 6
>>1cqq_A Type 2 rhinovirus 3C protease; viral protein, hydrolase; HET: AG7; 1.85A {Human rhinovirus 2} (A:14-90)
Probab=5.74 E-value=2.2e+02 Score=12.70 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=21.8
Q ss_pred CCCCCCHHHHCCCEEECCCCCCCCCCCCCC
Q ss_conf 300000233328334202102344300027
Q gi|254780631|r 4 CSDNIDREHKAGIEVEKNAITTKDNEKKRN 33 (62)
Q Consensus 4 csdnidrehkagieveknaittkdnekkrn 33 (62)
+.|..+-..+.|+..|-..++-.-|||-|.
T Consensus 43 v~Da~~L~d~~gvnLEiTvi~LdrNEKFRD 72 (77)
T 1cqq_A 43 VIDSYDLYNKNGIKLEITVLKLDRNEKFRD 72 (77)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECSSCCBCC
T ss_pred EEEEEEEECCCCCCEEEEEEECCCCCCCCC
T ss_conf 646457882789847799999999764777
No 7
>>1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} (A:)
Probab=5.66 E-value=1.5e+02 Score=13.56 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 34430002733475
Q gi|254780631|r 25 TKDNEKKRNPFQGR 38 (62)
Q Consensus 25 tkdnekkrnpfqgr 38 (62)
.+|+.||||.|-|-
T Consensus 91 V~d~~kK~~AF~Gs 104 (109)
T 1vd0_A 91 ASDETKKRTAFAGT 104 (109)
T ss_dssp CCSHHHHHTTTTTS
T ss_pred HHHHHHHHHHHCCC
T ss_conf 21678877655077
No 8
>>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi} (A:53-108)
Probab=5.50 E-value=2.6e+02 Score=12.35 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=16.1
Q ss_pred CCC-CCCCCCCCCCCCCCCEEE
Q ss_conf 475-455776678735871277
Q gi|254780631|r 36 QGR-SSRNPCQGGDIKAPETVV 56 (62)
Q Consensus 36 qgr-ssrnpcqggdikapetvv 56 (62)
..| ..|||--|-.|+-|+.-+
T Consensus 17 ~~R~~grNP~Tge~i~I~a~~v 38 (56)
T 2np2_A 17 KGRLNARNPQTGEYVKVLDHHV 38 (56)
T ss_dssp CCBSSCBCTTTCCBCCBCCEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCC
T ss_conf 4765553889998898538756
No 9
>>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A (A:88-382)
Probab=5.38 E-value=2.1e+02 Score=12.82 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=9.6
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf 002733475--4557766787358
Q gi|254780631|r 30 KKRNPFQGR--SSRNPCQGGDIKA 51 (62)
Q Consensus 30 kkrnpfqgr--ssrnpcqggdika 51 (62)
.||.|||.- -.-.--+||+|-|
T Consensus 127 rKr~pyq~GF~I~YeDL~gGnIPa 150 (295)
T 1x9p_A 127 RKRQPFQEGFRITYDDLEGGNIPA 150 (295)
T ss_dssp EESSCSSSCCEEEGGGSCSCEEEC
T ss_pred CCCCCCCCCCEEEEHHCCCCCCCC
T ss_conf 115776677288812215898520
No 10
>>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 1eqb_A* (A:1-39,A:285-420)
Probab=4.96 E-value=2.8e+02 Score=12.16 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred CHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02333283342021023443000273347545577
Q gi|254780631|r 9 DREHKAGIEVEKNAITTKDNEKKRNPFQGRSSRNP 43 (62)
Q Consensus 9 drehkagieveknaittkdnekkrnpfqgrssrnp 43 (62)
.+-.++||-|.||.| ||..+++-.|
T Consensus 93 ~~Le~agI~vNkn~i----------P~D~~~~~~~ 117 (175)
T 3gbx_A 93 AALGRANITVNKNSV----------PNDPKSPFVT 117 (175)
T ss_dssp HHHHHTTEECEEECC----------TTCSSCTTTC
T ss_pred HHHHHCCEEECCCCC----------CCCCCCCCCC
T ss_conf 899982978735727----------8999988899
Done!