Query gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 62 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 17:49:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780631.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2h4m_C Hnrpa1 protein, fragmen 6.2 1.5E+02 0.0063 12.8 1.1 18 30-48 20-37 (49) 2 1c5e_A Head decoration protein 6.2 93 0.0039 13.8 0.0 14 25-38 77-90 (95) 3 1v54_D Cytochrome C oxidase su 5.6 1.5E+02 0.0062 12.8 0.8 14 29-42 125-138 (147) 4 2jku_A Propionyl-COA carboxyla 5.3 1.9E+02 0.008 12.3 2.0 51 11-61 6-59 (94) 5 2d5d_A Methylmalonyl-COA decar 5.3 1.9E+02 0.008 12.3 1.9 30 32-61 9-39 (74) 6 1exe_A Transcription factor 1; 4.7 2.1E+02 0.0088 12.1 1.5 20 36-55 56-75 (99) 7 2izo_A FEN1, flap structure-sp 4.3 1.1E+02 0.0045 13.5 -0.7 14 1-14 229-242 (346) 8 1vd0_A Head decoration protein 4.2 1.5E+02 0.0063 12.8 -0.1 13 26-38 92-104 (109) 9 1lj2_C EIF4GI, eukaryotic prot 3.8 2E+02 0.0083 12.2 0.3 7 41-47 12-18 (28) 10 2xf4_A Hydroxyacylglutathione 3.6 1.3E+02 0.0056 13.1 -0.7 12 24-35 196-207 (210) No 1 >2h4m_C Hnrpa1 protein, fragment; heat repeat, nuclear import complex, protein transport; 3.05A {Homo sapiens} Probab=6.24 E-value=1.5e+02 Score=12.79 Aligned_cols=18 Identities=50% Similarity=0.774 Sum_probs=12.2 Q ss_pred CCCCCCCCCCCCCCCCCCC Q ss_conf 0027334754557766787 Q gi|254780631|r 30 KKRNPFQGRSSRNPCQGGD 48 (62) Q Consensus 30 kkrnpfqgrssrnpcqggd 48 (62) -|-.-|-|||| -|+-||. T Consensus 20 mKGgnfGgrss-gpyggGg 37 (49) T 2h4m_C 20 MKGGNFGGRSS-GPYGGGG 37 (49) T ss_dssp CCCCTTSCCCC-CCC---- T ss_pred CCCCCCCCCCC-CCCCCCC T ss_conf 32776577536-6647876 No 2 >1c5e_A Head decoration protein; bacteriophage lambda, head protein D, protein virus assembly, phage display, viral protein; 1.10A {Enterobacteria phage lambda} SCOP: b.85.2.1 PDB: 1tcz_A Probab=6.23 E-value=93 Score=13.82 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=9.8 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 34430002733475 Q gi|254780631|r 25 TKDNEKKRNPFQGR 38 (62) Q Consensus 25 tkdnekkrnpfqgr 38 (62) .+|+.||+|.|-|- T Consensus 77 Vtd~~kK~~AFaGs 90 (95) T 1c5e_A 77 ASDETKKRTAFAGT 90 (95) T ss_dssp CCCHHHHHTTTTTS T ss_pred HHHHHHHHHHHCCC T ss_conf 42678877765177 No 3 >1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ... Probab=5.62 E-value=1.5e+02 Score=12.82 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=10.7 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 00027334754557 Q gi|254780631|r 29 EKKRNPFQGRSSRN 42 (62) Q Consensus 29 ekkrnpfqgrssrn 42 (62) ..+-||++|-||.= T Consensus 125 ~~~~nPItG~SSkw 138 (147) T 1v54_D 125 DMKVAPIQGFSAKW 138 (147) T ss_dssp HTTSSTTTTSGGGE T ss_pred HCCCCCCCCCCCCC T ss_conf 83899987720001 No 4 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} Probab=5.29 E-value=1.9e+02 Score=12.28 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=29.9 Q ss_pred HHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECC Q ss_conf 3332833420210--2344300027334754557766787-3587127764317 Q gi|254780631|r 11 EHKAGIEVEKNAI--TTKDNEKKRNPFQGRSSRNPCQGGD-IKAPETVVEIKTD 61 (62) Q Consensus 11 ehkagieveknai--ttkdnekkrnpfqgrssrnpcqggd-ikapetvveiktd 61 (62) .|-+||...+.-+ -..++.--+-|+.|.-.+-.++-|| +++-+++++|.++ T Consensus 6 ~~s~gi~~~~~n~~~~~~~~~~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEsm 59 (94) T 2jku_A 6 HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94) T ss_dssp ------------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC- T ss_pred CCCCCCCCCCCEEEECCCCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEECC T ss_conf 433555777740411278689898999968989981899999589879999803 No 5 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Probab=5.27 E-value=1.9e+02 Score=12.27 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=15.4 Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCEEEEEECC Q ss_conf 27334754557766-7873587127764317 Q gi|254780631|r 32 RNPFQGRSSRNPCQ-GGDIKAPETVVEIKTD 61 (62) Q Consensus 32 rnpfqgrssrnpcq-ggdikapetvveiktd 61 (62) +.|+.|+-.+-..+ |..+++-+++.+|.++ T Consensus 9 ~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE~~ 39 (74) T 2d5d_A 9 SAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74) T ss_dssp ECSSCEEEEEECCCTTCEECTTCEEEEEEET T ss_pred ECCCCCEEEEEECCCCCEEECCCEEEEEEEC T ss_conf 7999979999994899999389889999935 No 6 >1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A Probab=4.69 E-value=2.1e+02 Score=12.06 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.0 Q ss_pred CCCCCCCCCCCCCCCCCCEE Q ss_conf 47545577667873587127 Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETV 55 (62) Q Consensus 36 qgrssrnpcqggdikapetv 55 (62) ..|..|||-.|..|..|+.. T Consensus 56 ~~r~grNP~Tge~i~ip~k~ 75 (99) T 1exe_A 56 QARKGFNPQTQEALEIAPSV 75 (99) T ss_dssp CCCCCCCSSSSSCCCCCCCC T ss_pred CCCCCCCCCCCCEEEECCCC T ss_conf 58113583999889865864 No 7 >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Probab=4.30 E-value=1.1e+02 Score=13.54 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=8.0 Q ss_pred CCCCCCCCCHHHHC Q ss_conf 97530000023332 Q gi|254780631|r 1 MSGCSDNIDREHKA 14 (62) Q Consensus 1 msgcsdnidrehka 14 (62) |+|||||++.-..- T Consensus 229 L~G~dyn~~gv~gi 242 (346) T 2izo_A 229 LIGTDYNPDGIRGI 242 (346) T ss_dssp HHCCSSSTTCSTTC T ss_pred HCCCCCCCCCCCCC T ss_conf 45865686668983 No 8 >1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} SCOP: b.85.2.1 Probab=4.16 E-value=1.5e+02 Score=12.79 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=8.0 Q ss_pred CCCCCCCCCCCCC Q ss_conf 4430002733475 Q gi|254780631|r 26 KDNEKKRNPFQGR 38 (62) Q Consensus 26 kdnekkrnpfqgr 38 (62) .|+.||||.|-|- T Consensus 92 td~~kK~~AFaGs 104 (109) T 1vd0_A 92 SDETKKRTAFAGT 104 (109) T ss_dssp CSHHHHHTTTTTS T ss_pred HHHHHHHHHHCCC T ss_conf 1678866654177 No 9 >1lj2_C EIF4GI, eukaryotic protein synthesis initiation factor; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} Probab=3.80 E-value=2e+02 Score=12.18 Aligned_cols=7 Identities=71% Similarity=1.360 Sum_probs=0.0 Q ss_pred CCCCCCC Q ss_conf 5776678 Q gi|254780631|r 41 RNPCQGG 47 (62) Q Consensus 41 rnpcqgg 47 (62) |.|-||| T Consensus 12 rdpnqgg 18 (28) T 1lj2_C 12 RDPNQGG 18 (28) T ss_dssp ECGGGTS T ss_pred CCCCCCC T ss_conf 0856465 No 10 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=3.61 E-value=1.3e+02 Score=13.07 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCC Q ss_conf 234430002733 Q gi|254780631|r 24 TTKDNEKKRNPF 35 (62) Q Consensus 24 ttkdnekkrnpf 35 (62) +|...||+.||| T Consensus 196 st~~~e~~~N~~ 207 (210) T 2xf4_A 196 STLGYERLHNPF 207 (210) T ss_dssp EEHHHHHHHCTT T ss_pred CCHHHHHHHCHH T ss_conf 549999875845 Done!