Query         gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 17:49:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780631.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2h4m_C Hnrpa1 protein, fragmen   6.2 1.5E+02  0.0063   12.8   1.1   18   30-48     20-37  (49)
  2 1c5e_A Head decoration protein   6.2      93  0.0039   13.8   0.0   14   25-38     77-90  (95)
  3 1v54_D Cytochrome C oxidase su   5.6 1.5E+02  0.0062   12.8   0.8   14   29-42    125-138 (147)
  4 2jku_A Propionyl-COA carboxyla   5.3 1.9E+02   0.008   12.3   2.0   51   11-61      6-59  (94)
  5 2d5d_A Methylmalonyl-COA decar   5.3 1.9E+02   0.008   12.3   1.9   30   32-61      9-39  (74)
  6 1exe_A Transcription factor 1;   4.7 2.1E+02  0.0088   12.1   1.5   20   36-55     56-75  (99)
  7 2izo_A FEN1, flap structure-sp   4.3 1.1E+02  0.0045   13.5  -0.7   14    1-14    229-242 (346)
  8 1vd0_A Head decoration protein   4.2 1.5E+02  0.0063   12.8  -0.1   13   26-38     92-104 (109)
  9 1lj2_C EIF4GI, eukaryotic prot   3.8   2E+02  0.0083   12.2   0.3    7   41-47     12-18  (28)
 10 2xf4_A Hydroxyacylglutathione    3.6 1.3E+02  0.0056   13.1  -0.7   12   24-35    196-207 (210)

No 1  
>2h4m_C Hnrpa1 protein, fragment; heat repeat, nuclear import complex, protein transport; 3.05A {Homo sapiens}
Probab=6.24  E-value=1.5e+02  Score=12.79  Aligned_cols=18  Identities=50%  Similarity=0.774  Sum_probs=12.2

Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q ss_conf             0027334754557766787
Q gi|254780631|r   30 KKRNPFQGRSSRNPCQGGD   48 (62)
Q Consensus        30 kkrnpfqgrssrnpcqggd   48 (62)
                      -|-.-|-|||| -|+-||.
T Consensus        20 mKGgnfGgrss-gpyggGg   37 (49)
T 2h4m_C           20 MKGGNFGGRSS-GPYGGGG   37 (49)
T ss_dssp             CCCCTTSCCCC-CCC----
T ss_pred             CCCCCCCCCCC-CCCCCCC
T ss_conf             32776577536-6647876


No 2  
>1c5e_A Head decoration protein; bacteriophage lambda, head protein D, protein virus assembly, phage display, viral protein; 1.10A {Enterobacteria phage lambda} SCOP: b.85.2.1 PDB: 1tcz_A
Probab=6.23  E-value=93  Score=13.82  Aligned_cols=14  Identities=43%  Similarity=0.745  Sum_probs=9.8

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             34430002733475
Q gi|254780631|r   25 TKDNEKKRNPFQGR   38 (62)
Q Consensus        25 tkdnekkrnpfqgr   38 (62)
                      .+|+.||+|.|-|-
T Consensus        77 Vtd~~kK~~AFaGs   90 (95)
T 1c5e_A           77 ASDETKKRTAFAGT   90 (95)
T ss_dssp             CCCHHHHHTTTTTS
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             42678877765177


No 3  
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ...
Probab=5.62  E-value=1.5e+02  Score=12.82  Aligned_cols=14  Identities=36%  Similarity=0.461  Sum_probs=10.7

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             00027334754557
Q gi|254780631|r   29 EKKRNPFQGRSSRN   42 (62)
Q Consensus        29 ekkrnpfqgrssrn   42 (62)
                      ..+-||++|-||.=
T Consensus       125 ~~~~nPItG~SSkw  138 (147)
T 1v54_D          125 DMKVAPIQGFSAKW  138 (147)
T ss_dssp             HTTSSTTTTSGGGE
T ss_pred             HCCCCCCCCCCCCC
T ss_conf             83899987720001


No 4  
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=5.29  E-value=1.9e+02  Score=12.28  Aligned_cols=51  Identities=16%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             HHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECC
Q ss_conf             3332833420210--2344300027334754557766787-3587127764317
Q gi|254780631|r   11 EHKAGIEVEKNAI--TTKDNEKKRNPFQGRSSRNPCQGGD-IKAPETVVEIKTD   61 (62)
Q Consensus        11 ehkagieveknai--ttkdnekkrnpfqgrssrnpcqggd-ikapetvveiktd   61 (62)
                      .|-+||...+.-+  -..++.--+-|+.|.-.+-.++-|| +++-+++++|.++
T Consensus         6 ~~s~gi~~~~~n~~~~~~~~~~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEsm   59 (94)
T 2jku_A            6 HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             ------------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             CCCCCCCCCCCEEEECCCCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEECC
T ss_conf             433555777740411278689898999968989981899999589879999803


No 5  
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=5.27  E-value=1.9e+02  Score=12.27  Aligned_cols=30  Identities=13%  Similarity=0.346  Sum_probs=15.4

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCEEEEEECC
Q ss_conf             27334754557766-7873587127764317
Q gi|254780631|r   32 RNPFQGRSSRNPCQ-GGDIKAPETVVEIKTD   61 (62)
Q Consensus        32 rnpfqgrssrnpcq-ggdikapetvveiktd   61 (62)
                      +.|+.|+-.+-..+ |..+++-+++.+|.++
T Consensus         9 ~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE~~   39 (74)
T 2d5d_A            9 SAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM   39 (74)
T ss_dssp             ECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             ECCCCCEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf             7999979999994899999389889999935


No 6  
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=4.69  E-value=2.1e+02  Score=12.06  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCCCCCCCCEE
Q ss_conf             47545577667873587127
Q gi|254780631|r   36 QGRSSRNPCQGGDIKAPETV   55 (62)
Q Consensus        36 qgrssrnpcqggdikapetv   55 (62)
                      ..|..|||-.|..|..|+..
T Consensus        56 ~~r~grNP~Tge~i~ip~k~   75 (99)
T 1exe_A           56 QARKGFNPQTQEALEIAPSV   75 (99)
T ss_dssp             CCCCCCCSSSSSCCCCCCCC
T ss_pred             CCCCCCCCCCCCEEEECCCC
T ss_conf             58113583999889865864


No 7  
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=4.30  E-value=1.1e+02  Score=13.54  Aligned_cols=14  Identities=21%  Similarity=0.138  Sum_probs=8.0

Q ss_pred             CCCCCCCCCHHHHC
Q ss_conf             97530000023332
Q gi|254780631|r    1 MSGCSDNIDREHKA   14 (62)
Q Consensus         1 msgcsdnidrehka   14 (62)
                      |+|||||++.-..-
T Consensus       229 L~G~dyn~~gv~gi  242 (346)
T 2izo_A          229 LIGTDYNPDGIRGI  242 (346)
T ss_dssp             HHCCSSSTTCSTTC
T ss_pred             HCCCCCCCCCCCCC
T ss_conf             45865686668983


No 8  
>1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} SCOP: b.85.2.1
Probab=4.16  E-value=1.5e+02  Score=12.79  Aligned_cols=13  Identities=46%  Similarity=0.787  Sum_probs=8.0

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             4430002733475
Q gi|254780631|r   26 KDNEKKRNPFQGR   38 (62)
Q Consensus        26 kdnekkrnpfqgr   38 (62)
                      .|+.||||.|-|-
T Consensus        92 td~~kK~~AFaGs  104 (109)
T 1vd0_A           92 SDETKKRTAFAGT  104 (109)
T ss_dssp             CSHHHHHTTTTTS
T ss_pred             HHHHHHHHHHCCC
T ss_conf             1678866654177


No 9  
>1lj2_C EIF4GI, eukaryotic protein synthesis initiation factor; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A}
Probab=3.80  E-value=2e+02  Score=12.18  Aligned_cols=7  Identities=71%  Similarity=1.360  Sum_probs=0.0

Q ss_pred             CCCCCCC
Q ss_conf             5776678
Q gi|254780631|r   41 RNPCQGG   47 (62)
Q Consensus        41 rnpcqgg   47 (62)
                      |.|-|||
T Consensus        12 rdpnqgg   18 (28)
T 1lj2_C           12 RDPNQGG   18 (28)
T ss_dssp             ECGGGTS
T ss_pred             CCCCCCC
T ss_conf             0856465


No 10 
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=3.61  E-value=1.3e+02  Score=13.07  Aligned_cols=12  Identities=42%  Similarity=0.661  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             234430002733
Q gi|254780631|r   24 TTKDNEKKRNPF   35 (62)
Q Consensus        24 ttkdnekkrnpf   35 (62)
                      +|...||+.|||
T Consensus       196 st~~~e~~~N~~  207 (210)
T 2xf4_A          196 STLGYERLHNPF  207 (210)
T ss_dssp             EEHHHHHHHCTT
T ss_pred             CCHHHHHHHCHH
T ss_conf             549999875845


Done!