Query gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 62 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:19:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780631.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1k28d2 b.106.1.1 (D:201-376) 5.1 77 0.0056 13.0 0.3 17 23-39 36-52 (176) 2 d1v54d_ f.23.1.1 (D:) Mitochon 4.9 1E+02 0.0073 12.5 0.8 14 29-42 122-135 (144) 3 d1a77a1 a.60.7.1 (A:209-316) F 4.7 61 0.0044 13.6 -0.5 16 1-16 12-27 (108) 4 d2a6sa1 d.298.1.1 (A:1-83) Tox 4.6 92 0.0067 12.7 0.4 19 28-46 32-50 (83) 5 d1c5ea_ b.85.2.1 (A:) Head dec 4.5 78 0.0057 13.0 -0.1 13 26-38 78-90 (95) 6 d1huua_ a.55.1.1 (A:) HU prote 4.5 1.3E+02 0.0092 12.0 1.1 20 36-55 56-75 (90) 7 d1owfb_ a.55.1.1 (B:) Integrat 4.1 1.2E+02 0.0086 12.1 0.6 21 36-56 57-77 (94) 8 d1exea_ a.55.1.1 (A:) Transcri 3.1 1.7E+02 0.012 11.3 1.5 19 36-54 56-74 (99) 9 d2o97b1 a.55.1.1 (B:1-90) HU p 3.0 1.4E+02 0.01 11.8 0.1 20 36-55 56-75 (90) 10 d1owfa_ a.55.1.1 (A:) Integrat 3.0 1.7E+02 0.013 11.2 0.7 20 37-56 58-77 (96) No 1 >d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]} Probab=5.11 E-value=77 Score=13.05 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCCCCCC Q ss_conf 02344300027334754 Q gi|254780631|r 23 ITTKDNEKKRNPFQGRS 39 (62) Q Consensus 23 ittkdnekkrnpfqgrs 39 (62) --||.|.+.||||..-+ T Consensus 36 WlTKaN~~trnp~~N~t 52 (176) T d1k28d2 36 WLTKSNPHKRDPMKNAT 52 (176) T ss_dssp CSBSCCHHHHTTTTSEE T ss_pred EEECCCCCCCCCCCCCE T ss_conf 86226733368654624 No 2 >d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Probab=4.95 E-value=1e+02 Score=12.47 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=10.6 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 00027334754557 Q gi|254780631|r 29 EKKRNPFQGRSSRN 42 (62) Q Consensus 29 ekkrnpfqgrssrn 42 (62) ..+-||++|-||.= T Consensus 122 ~~~~nPitG~SSkw 135 (144) T d1v54d_ 122 DMKVAPIQGFSAKW 135 (144) T ss_dssp HTTSSTTTTSGGGE T ss_pred HCCCCCCCCCCCCC T ss_conf 82789987720323 No 3 >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=4.68 E-value=61 Score=13.56 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=10.1 Q ss_pred CCCCCCCCCHHHHCCC Q ss_conf 9753000002333283 Q gi|254780631|r 1 MSGCSDNIDREHKAGI 16 (62) Q Consensus 1 msgcsdnidrehkagi 16 (62) +.||++||+.-..-|. T Consensus 12 L~G~dyn~pGV~GIGp 27 (108) T d1a77a1 12 FMGTDYNPGGVKGIGF 27 (108) T ss_dssp HHCCTTSTTCSTTCCH T ss_pred HHCCCCCCCCCCCCCH T ss_conf 9587688778999178 No 4 >d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]} Probab=4.61 E-value=92 Score=12.66 Aligned_cols=19 Identities=26% Similarity=0.768 Sum_probs=13.0 Q ss_pred CCCCCCCCCCCCCCCCCCC Q ss_conf 3000273347545577667 Q gi|254780631|r 28 NEKKRNPFQGRSSRNPCQG 46 (62) Q Consensus 28 nekkrnpfqgrssrnpcqg 46 (62) .+-+++||+|+..-.|-.| T Consensus 32 ~~i~~~p~~g~gkpE~Lkg 50 (83) T d2a6sa1 32 KDTRRTPFEGKGKPEPLKH 50 (83) T ss_dssp HHHHHSTTSSTTCCEECCG T ss_pred HHHHHCCCCCCCCCCCCCC T ss_conf 9998476779998715337 No 5 >d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage lambda [TaxId: 10710]} Probab=4.51 E-value=78 Score=13.01 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=8.7 Q ss_pred CCCCCCCCCCCCC Q ss_conf 4430002733475 Q gi|254780631|r 26 KDNEKKRNPFQGR 38 (62) Q Consensus 26 kdnekkrnpfqgr 38 (62) .|+.||||.|-|- T Consensus 78 td~~kK~~AFaGs 90 (95) T d1c5ea_ 78 SDETKKRTAFAGT 90 (95) T ss_dssp CCHHHHHTTTTTS T ss_pred HHHHHHHHHHCCC T ss_conf 2678877664177 No 6 >d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]} Probab=4.46 E-value=1.3e+02 Score=11.97 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=15.4 Q ss_pred CCCCCCCCCCCCCCCCCCEE Q ss_conf 47545577667873587127 Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETV 55 (62) Q Consensus 36 qgrssrnpcqggdikapetv 55 (62) ..|..|||-.|-.|..|+.- T Consensus 56 ~~r~~rNP~Tge~i~ip~k~ 75 (90) T d1huua_ 56 AARKGRNPQTGEEMEIPASK 75 (90) T ss_dssp CCB----------TTBCCEE T ss_pred CCEEEECCCCCCEEEECCCC T ss_conf 66210888999889953873 No 7 >d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]} Probab=4.11 E-value=1.2e+02 Score=12.10 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=15.8 Q ss_pred CCCCCCCCCCCCCCCCCCEEE Q ss_conf 475455776678735871277 Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETVV 56 (62) Q Consensus 36 qgrssrnpcqggdikapetvv 56 (62) ..|..|||--|-.|..|+.-+ T Consensus 57 ~~R~grNP~Tge~i~ip~k~~ 77 (94) T d1owfb_ 57 APRTGRNPKTGDKVELEGKYV 77 (94) T ss_dssp CCEEEECTTTCCEEEECCEEE T ss_pred CCCCCCCCCCCCEEEECCCCC T ss_conf 664315889999898638630 No 8 >d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]} Probab=3.10 E-value=1.7e+02 Score=11.31 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCCCCCCCE Q ss_conf 4754557766787358712 Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPET 54 (62) Q Consensus 36 qgrssrnpcqggdikapet 54 (62) ..|..|||-.|..|..|+. T Consensus 56 ~~r~grNP~Tge~i~ip~~ 74 (99) T d1exea_ 56 QARKGFNPQTQEALEIAPS 74 (99) T ss_dssp CCCCCCCSSSSSCCCCCCC T ss_pred CCCCCCCCCCCCEEEECCC T ss_conf 6633178699998986486 No 9 >d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]} Probab=3.01 E-value=1.4e+02 Score=11.78 Aligned_cols=20 Identities=30% Similarity=0.523 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCCCCCCCEE Q ss_conf 47545577667873587127 Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETV 55 (62) Q Consensus 36 qgrssrnpcqggdikapetv 55 (62) ..|..|||-.|..|..|+.- T Consensus 56 ~~r~~rNP~Tge~i~ip~k~ 75 (90) T d2o97b1 56 AARTGRNPQTGKEITIAAAK 75 (90) T ss_dssp C------------------C T ss_pred CCCEEECCCCCCEEEECCCC T ss_conf 46400889999789952872 No 10 >d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]} Probab=2.99 E-value=1.7e+02 Score=11.25 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCCCCCEEE Q ss_conf 75455776678735871277 Q gi|254780631|r 37 GRSSRNPCQGGDIKAPETVV 56 (62) Q Consensus 37 grssrnpcqggdikapetvv 56 (62) .|..|||-.|..|..|+.-+ T Consensus 58 ~r~~rNP~Tge~i~ip~~~~ 77 (96) T d1owfa_ 58 QRPGRNPKTGEDIPITARRV 77 (96) T ss_dssp CEEEECSSSCCEEEECCEEE T ss_pred CCCEECCCCCCEEEECCCCE T ss_conf 60126889998898548613 Done!