Query gi|254780631|ref|YP_003065044.1| hypothetical protein CLIBASIA_02590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:19:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780631.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k28d2 b.106.1.1 (D:201-376) 5.1 77 0.0056 13.0 0.3 17 23-39 36-52 (176)
2 d1v54d_ f.23.1.1 (D:) Mitochon 4.9 1E+02 0.0073 12.5 0.8 14 29-42 122-135 (144)
3 d1a77a1 a.60.7.1 (A:209-316) F 4.7 61 0.0044 13.6 -0.5 16 1-16 12-27 (108)
4 d2a6sa1 d.298.1.1 (A:1-83) Tox 4.6 92 0.0067 12.7 0.4 19 28-46 32-50 (83)
5 d1c5ea_ b.85.2.1 (A:) Head dec 4.5 78 0.0057 13.0 -0.1 13 26-38 78-90 (95)
6 d1huua_ a.55.1.1 (A:) HU prote 4.5 1.3E+02 0.0092 12.0 1.1 20 36-55 56-75 (90)
7 d1owfb_ a.55.1.1 (B:) Integrat 4.1 1.2E+02 0.0086 12.1 0.6 21 36-56 57-77 (94)
8 d1exea_ a.55.1.1 (A:) Transcri 3.1 1.7E+02 0.012 11.3 1.5 19 36-54 56-74 (99)
9 d2o97b1 a.55.1.1 (B:1-90) HU p 3.0 1.4E+02 0.01 11.8 0.1 20 36-55 56-75 (90)
10 d1owfa_ a.55.1.1 (A:) Integrat 3.0 1.7E+02 0.013 11.2 0.7 20 37-56 58-77 (96)
No 1
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
Probab=5.11 E-value=77 Score=13.05 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 02344300027334754
Q gi|254780631|r 23 ITTKDNEKKRNPFQGRS 39 (62)
Q Consensus 23 ittkdnekkrnpfqgrs 39 (62)
--||.|.+.||||..-+
T Consensus 36 WlTKaN~~trnp~~N~t 52 (176)
T d1k28d2 36 WLTKSNPHKRDPMKNAT 52 (176)
T ss_dssp CSBSCCHHHHTTTTSEE
T ss_pred EEECCCCCCCCCCCCCE
T ss_conf 86226733368654624
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.95 E-value=1e+02 Score=12.47 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 00027334754557
Q gi|254780631|r 29 EKKRNPFQGRSSRN 42 (62)
Q Consensus 29 ekkrnpfqgrssrn 42 (62)
..+-||++|-||.=
T Consensus 122 ~~~~nPitG~SSkw 135 (144)
T d1v54d_ 122 DMKVAPIQGFSAKW 135 (144)
T ss_dssp HTTSSTTTTSGGGE
T ss_pred HCCCCCCCCCCCCC
T ss_conf 82789987720323
No 3
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.68 E-value=61 Score=13.56 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=10.1
Q ss_pred CCCCCCCCCHHHHCCC
Q ss_conf 9753000002333283
Q gi|254780631|r 1 MSGCSDNIDREHKAGI 16 (62)
Q Consensus 1 msgcsdnidrehkagi 16 (62)
+.||++||+.-..-|.
T Consensus 12 L~G~dyn~pGV~GIGp 27 (108)
T d1a77a1 12 FMGTDYNPGGVKGIGF 27 (108)
T ss_dssp HHCCTTSTTCSTTCCH
T ss_pred HHCCCCCCCCCCCCCH
T ss_conf 9587688778999178
No 4
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=4.61 E-value=92 Score=12.66 Aligned_cols=19 Identities=26% Similarity=0.768 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 3000273347545577667
Q gi|254780631|r 28 NEKKRNPFQGRSSRNPCQG 46 (62)
Q Consensus 28 nekkrnpfqgrssrnpcqg 46 (62)
.+-+++||+|+..-.|-.|
T Consensus 32 ~~i~~~p~~g~gkpE~Lkg 50 (83)
T d2a6sa1 32 KDTRRTPFEGKGKPEPLKH 50 (83)
T ss_dssp HHHHHSTTSSTTCCEECCG
T ss_pred HHHHHCCCCCCCCCCCCCC
T ss_conf 9998476779998715337
No 5
>d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage lambda [TaxId: 10710]}
Probab=4.51 E-value=78 Score=13.01 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4430002733475
Q gi|254780631|r 26 KDNEKKRNPFQGR 38 (62)
Q Consensus 26 kdnekkrnpfqgr 38 (62)
.|+.||||.|-|-
T Consensus 78 td~~kK~~AFaGs 90 (95)
T d1c5ea_ 78 SDETKKRTAFAGT 90 (95)
T ss_dssp CCHHHHHTTTTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 2678877664177
No 6
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.46 E-value=1.3e+02 Score=11.97 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCCCEE
Q ss_conf 47545577667873587127
Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETV 55 (62)
Q Consensus 36 qgrssrnpcqggdikapetv 55 (62)
..|..|||-.|-.|..|+.-
T Consensus 56 ~~r~~rNP~Tge~i~ip~k~ 75 (90)
T d1huua_ 56 AARKGRNPQTGEEMEIPASK 75 (90)
T ss_dssp CCB----------TTBCCEE
T ss_pred CCEEEECCCCCCEEEECCCC
T ss_conf 66210888999889953873
No 7
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=4.11 E-value=1.2e+02 Score=12.10 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEE
Q ss_conf 475455776678735871277
Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETVV 56 (62)
Q Consensus 36 qgrssrnpcqggdikapetvv 56 (62)
..|..|||--|-.|..|+.-+
T Consensus 57 ~~R~grNP~Tge~i~ip~k~~ 77 (94)
T d1owfb_ 57 APRTGRNPKTGDKVELEGKYV 77 (94)
T ss_dssp CCEEEECTTTCCEEEECCEEE
T ss_pred CCCCCCCCCCCCEEEECCCCC
T ss_conf 664315889999898638630
No 8
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=3.10 E-value=1.7e+02 Score=11.31 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCE
Q ss_conf 4754557766787358712
Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPET 54 (62)
Q Consensus 36 qgrssrnpcqggdikapet 54 (62)
..|..|||-.|..|..|+.
T Consensus 56 ~~r~grNP~Tge~i~ip~~ 74 (99)
T d1exea_ 56 QARKGFNPQTQEALEIAPS 74 (99)
T ss_dssp CCCCCCCSSSSSCCCCCCC
T ss_pred CCCCCCCCCCCCEEEECCC
T ss_conf 6633178699998986486
No 9
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=3.01 E-value=1.4e+02 Score=11.78 Aligned_cols=20 Identities=30% Similarity=0.523 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCEE
Q ss_conf 47545577667873587127
Q gi|254780631|r 36 QGRSSRNPCQGGDIKAPETV 55 (62)
Q Consensus 36 qgrssrnpcqggdikapetv 55 (62)
..|..|||-.|..|..|+.-
T Consensus 56 ~~r~~rNP~Tge~i~ip~k~ 75 (90)
T d2o97b1 56 AARTGRNPQTGKEITIAAAK 75 (90)
T ss_dssp C------------------C
T ss_pred CCCEEECCCCCCEEEECCCC
T ss_conf 46400889999789952872
No 10
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=1.7e+02 Score=11.25 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCEEE
Q ss_conf 75455776678735871277
Q gi|254780631|r 37 GRSSRNPCQGGDIKAPETVV 56 (62)
Q Consensus 37 grssrnpcqggdikapetvv 56 (62)
.|..|||-.|..|..|+.-+
T Consensus 58 ~r~~rNP~Tge~i~ip~~~~ 77 (96)
T d1owfa_ 58 QRPGRNPKTGEDIPITARRV 77 (96)
T ss_dssp CEEEECSSSCCEEEECCEEE
T ss_pred CCCEECCCCCCEEEECCCCE
T ss_conf 60126889998898548613
Done!