RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780632|ref|YP_003065045.1| hypothetical protein
CLIBASIA_02595 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|183406 PRK12288, PRK12288, GTPase RsgA; Reviewed.
          Length = 347

 Score = 25.6 bits (57), Expect = 2.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 7   TLESLMVSFRVDMSPAVQLQCGLGSSIVAVKP 38
           T+ SL+   RV   P  +   G+   + AV P
Sbjct: 69  TIRSLVTGDRVVWRPGKEALEGVSGVVEAVHP 100


>gnl|CDD|180905 PRK07246, PRK07246, bifunctional ATP-dependent DNA helicase/DNA
           polymerase III subunit epsilon; Validated.
          Length = 820

 Score = 25.0 bits (55), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 5   PETLESLMVSFRVDMSPAVQLQCGLG 30
           PET ++  VS  + +SP V L   LG
Sbjct: 571 PETCKTYFVSATLQISPRVSLADLLG 596


>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional.
          Length = 644

 Score = 24.8 bits (55), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 43  ITDVARGQINVRLGDN 58
           I D++RG + VRL +N
Sbjct: 569 IIDISRGGMRVRLLEN 584


>gnl|CDD|182987 PRK11132, cysE, serine acetyltransferase; Provisional.
          Length = 273

 Score = 23.9 bits (52), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 13  VSFRVDMSPAVQLQCGL 29
           V+F+VD+ PA ++  G+
Sbjct: 138 VAFQVDIHPAAKIGRGI 154


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,083,479
Number of extensions: 52297
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 6
Length of query: 71
Length of database: 5,994,473
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,086,937
Effective search space: 147521173
Effective search space used: 147521173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)