BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780632|ref|YP_003065045.1| hypothetical protein
CLIBASIA_02595 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780632|ref|YP_003065045.1| hypothetical protein CLIBASIA_02595 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score =  144 bits (363), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MINGPETLESLMVSFRVDMSPAVQLQCGLGSSIVAVKPVVPYITDVARGQINVRLGDNYG 60
          MINGPETLESLMVSFRVDMSPAVQLQCGLGSSIVAVKPVVPYITDVARGQINVRLGDNYG
Sbjct: 1  MINGPETLESLMVSFRVDMSPAVQLQCGLGSSIVAVKPVVPYITDVARGQINVRLGDNYG 60

Query: 61 VLHSVDLVTMT 71
          VLHSVDLVTMT
Sbjct: 61 VLHSVDLVTMT 71


>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 482

 Score = 23.5 bits (49), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 1   MINGPETLESLMVSFRVDMSPAVQLQ-CGLGSSIVAVKPVVPYITDVAR 48
           +++  +  +S++ + R  + P+ + + C L  S++AV P +  + D+AR
Sbjct: 110 LVSRKQLCDSIICALREGVVPSQENEHCAL-DSLIAVSPAMIQVVDLAR 157


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 22.3 bits (46), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 28  GLGSSIVAVKPVVPYIT 44
           G+G+S   +KP+V ++T
Sbjct: 203 GIGASFAGLKPIVEFMT 219


>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 461

 Score = 21.6 bits (44), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 22  AVQLQCGLGSSIVAVKPVVPYITDVARGQINVRLGDNYGVLHSVDLVTMT 71
           A  L CGL   +  ++P  P +    +  IN+      G+L +V L+  T
Sbjct: 374 AASLACGLLGILQKIEPTPPTMKSANQEAINL----PRGLLEAVTLLENT 419


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 1576

 Score = 20.0 bits (40), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 9   ESLMVSFRVDMSPA 22
           E L+V +++D+SPA
Sbjct: 583 EHLVVLYQMDLSPA 596


>gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 19.6 bits (39), Expect = 9.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 24  QLQCGLGSSIVAVKPVVPY 42
           QL C L S   +  PV+ Y
Sbjct: 149 QLDCSLPSEFKSSVPVIAY 167


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,693
Number of Sequences: 1233
Number of extensions: 1112
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space:  8033290
effective search space used:  8033290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)