Query gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 267 No_of_seqs 115 out of 722 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 15:02:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780633.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1v7z_A Creatininase, creatini 100.0 0 0 459.0 24.1 237 1-252 1-255 (260) 2 >3dah_A Ribose-phosphate pyrop 90.2 1.4 4.1E-05 23.7 7.7 71 42-121 68-139 (176) 3 >2h06_A Ribose-phosphate pyrop 87.8 2 6E-05 22.7 7.6 68 43-119 65-132 (181) 4 >1dku_A Protein (phosphoribosy 87.7 2 6E-05 22.6 7.6 69 43-120 71-139 (175) 5 >1u9y_A RPPK;, ribose-phosphat 81.5 3.9 0.00011 20.8 6.6 69 41-120 59-128 (156) 6 >2ji4_A Phosphoribosyl pyropho 69.4 8.1 0.00024 18.8 6.8 67 43-120 94-161 (203) 7 >2wj6_A 1H-3-hydroxy-4-oxoquin 52.6 16 0.00047 16.9 7.1 90 55-153 47-136 (207) 8 >2zqe_A MUTS2 protein; alpha/b 51.4 17 0.0005 16.8 8.3 50 87-138 12-61 (83) 9 >2rgy_A Transcriptional regula 47.8 19 0.00056 16.4 5.1 32 93-124 3-34 (133) 10 >2zki_A 199AA long hypothetica 44.9 21 0.00062 16.2 5.3 29 227-255 168-196 (199) 11 >2ggo_A 401AA long hypothetica 43.7 22 0.00065 16.0 3.4 33 85-120 26-58 (211) 12 >1v9s_A Uracil phosphoribosylt 40.0 25 0.00074 15.7 2.9 44 96-144 139-182 (208) 13 >1xtt_A Probable uracil phosph 38.5 26 0.00078 15.5 4.1 45 96-145 149-193 (216) 14 >2noc_A Putative periplasmic p 38.5 23 0.00068 15.9 2.4 41 82-122 40-81 (99) 15 >1yqh_A DUF77, IG hypothetical 37.7 27 0.0008 15.4 6.3 64 38-113 15-78 (109) 16 >2rbg_A Putative uncharacteriz 36.3 29 0.00084 15.3 3.3 62 85-146 10-72 (126) 17 >3fau_A NEDD4-binding protein 36.2 29 0.00085 15.3 4.6 49 89-137 10-67 (82) 18 >3g85_A Transcriptional regula 36.0 29 0.00085 15.3 4.5 29 95-123 4-32 (134) 19 >2qu7_A Putative transcription 33.7 31 0.00093 15.0 5.1 31 94-124 3-33 (136) 20 >3cs3_A Sugar-binding transcri 33.3 32 0.00094 15.0 3.6 44 95-138 4-49 (130) 21 >2jh3_A Ribosomal protein S2-r 33.2 32 0.00095 15.0 4.0 54 91-144 4-60 (132) 22 >3eeq_A Putative cobalamin bio 32.1 33 0.00098 14.9 2.7 17 45-61 18-34 (126) 23 >1dqu_A Isocitrate lyase; beta 31.1 35 0.001 14.8 2.7 17 97-113 132-148 (390) 24 >1vqu_A Anthranilate phosphori 31.0 35 0.001 14.8 2.8 25 96-120 21-45 (79) 25 >1o5o_A Uracil phosphoribosylt 29.9 36 0.0011 14.6 4.7 45 96-145 152-196 (221) 26 >2ews_A Pantothenate kinase; P 29.1 37 0.0011 14.6 6.5 43 100-142 122-164 (167) 27 >1uf0_A Serine/threonine-prote 28.5 26 0.00076 15.6 1.4 44 78-121 20-74 (116) 28 >2o20_A Catabolite control pro 28.4 38 0.0011 14.5 5.4 31 93-123 2-32 (130) 29 >3gv0_A Transcriptional regula 28.0 39 0.0012 14.4 5.5 45 95-139 4-50 (132) 30 >2dpw_A Hypothetical protein T 27.7 40 0.0012 14.4 2.9 34 84-120 26-59 (232) 31 >2fep_A Catabolite control pro 27.7 40 0.0012 14.4 4.5 29 93-121 2-30 (133) 32 >2hig_A 6-phospho-1-fructokina 27.5 40 0.0012 14.4 5.0 61 81-142 137-197 (249) 33 >2jfz_A Glutamate racemase; ce 26.8 41 0.0012 14.3 4.7 77 50-142 15-92 (139) 34 >2ehj_A Uracil phosphoribosylt 26.7 41 0.0012 14.3 4.2 50 88-146 135-184 (208) 35 >1jye_A Lactose operon repress 26.6 41 0.0012 14.3 4.9 31 94-124 3-33 (130) 36 >3lft_A Uncharacterized protei 25.2 44 0.0013 14.1 7.3 56 86-142 10-69 (148) 37 >2h9u_A DNA/RNA-binding protei 24.4 45 0.0013 14.0 3.8 54 82-136 6-59 (102) 38 >1hv9_A UDP-N-acetylglucosamin 24.3 46 0.0013 14.0 3.2 34 83-119 26-59 (222) 39 >3hf7_A Uncharacterized CBS-do 24.2 46 0.0014 14.0 3.0 27 95-121 22-48 (78) 40 >3knz_A Putative sugar binding 24.1 46 0.0014 14.0 5.4 35 96-131 5-39 (149) 41 >2wyh_A Alpha-mannosidase; hyd 23.6 47 0.0014 13.9 6.4 59 84-143 42-104 (119) 42 >1yt8_A Thiosulfate sulfurtran 23.2 48 0.0014 13.9 4.1 52 74-134 35-86 (112) 43 >2flq_A Nitric oxide synthase; 23.0 34 0.001 14.8 1.2 12 219-230 18-29 (68) 44 >3hcn_A Ferrochelatase, mitoch 22.9 48 0.0014 13.8 3.3 79 46-138 51-135 (143) 45 >2nyc_A Nuclear protein SNF4; 22.9 49 0.0014 13.8 3.5 24 95-118 27-50 (70) 46 >1jqn_A Pepcase, PEPC, phospho 22.4 45 0.0013 14.1 1.7 32 218-249 383-414 (420) 47 >1lvw_A Glucose-1-phosphate th 22.1 50 0.0015 13.7 2.9 34 84-120 28-61 (263) 48 >3brq_A HTH-type transcription 22.0 51 0.0015 13.7 5.1 30 94-123 4-33 (133) 49 >3dbi_A Sugar-binding transcri 22.0 51 0.0015 13.7 5.1 30 94-123 4-33 (133) 50 >2e3d_A UTP--glucose-1-phospha 21.8 51 0.0015 13.7 3.4 34 84-120 33-66 (302) 51 >2qx5_A Nucleoporin NIC96; mRN 21.7 43 0.0013 14.2 1.4 33 28-60 14-46 (61) 52 >2fn9_A Ribose ABC transporter 21.5 52 0.0015 13.7 3.3 31 93-123 10-40 (140) 53 >3b6i_A Flavoprotein WRBA; fla 21.5 52 0.0015 13.7 4.0 27 228-254 171-197 (198) 54 >1brt_A Bromoperoxidase A2; ha 21.5 52 0.0015 13.7 4.4 63 48-121 40-103 (277) 55 >1hkh_A Gamma lactamase; hydro 21.3 52 0.0015 13.6 4.0 66 46-122 38-104 (279) 56 >1byk_A Protein (trehalose ope 21.1 53 0.0016 13.6 3.6 45 95-139 4-51 (125) 57 >3gaa_A Uncharacterized protei 20.6 54 0.0016 13.5 2.6 35 83-117 94-128 (252) 58 >2yvy_A MGTE, Mg2+ transporter 20.4 55 0.0016 13.5 3.5 24 95-118 14-37 (75) 59 >3fbt_A Chorismate mutase and 20.4 55 0.0016 13.5 3.2 21 97-117 16-36 (117) No 1 >>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} (A:) Probab=100.00 E-value=0 Score=459.02 Aligned_cols=237 Identities=25% Similarity=0.305 Sum_probs=204.4 Q ss_pred CCCCCCHHHCCHHHHHH-CCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH Q ss_conf 98664046669798973-104-9889993200124797465226789999999999983566773999140232678011 Q gi|254780633|r 1 MNPLIIFTDNSLPLCAD-ARK-DWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEH 78 (267) Q Consensus 1 m~~~~~~~~lT~~e~~~-~~~-~~vvilPvGs~EqHGpHlPlgtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h 78 (267) |+.+++|++|||+|+++ .++ ++++|||+|||||||||||+|||+++++++|+++|+++ +++|+|++|||+|++| T Consensus 1 M~~~~~l~~lt~~E~~~~l~~~~~v~ilPvGs~EqHGpHLPlgtD~~~a~~ia~~ia~~~----~~lv~P~i~yG~s~~h 76 (260) T 1v7z_A 1 MSKSVFVGELTWKEYEARVAAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKRVAERI----GALVMPGLQYGYKSQQ 76 (260) T ss_dssp --CCCBGGGSCHHHHHHHHHTSCCCEEEEECCBCCCCSSBCTTHHHHHHHHHHHHHHHHH----TCEECCCBCCCBCCCH T ss_pred CCCCEEHHHCCHHHHHHHHHCCCCEEEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCC T ss_conf 985566785798999999827997899825574046887514589999999999999877----9917465255767434 Q ss_pred CC-----CCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH------CCEEEEEECCCCC Q ss_conf 36-----887333099999999999999999749988999739878678999999998635------5839998247654 Q gi|254780633|r 79 MY-----VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR------FSMLVVSTSWSRF 147 (267) Q Consensus 79 ~~-----fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~------~~~~~~~~~~~~~ 147 (267) +. |||||+++++||.++|.||++||+++||||||||||||||.+++..+++++.++ .+..++..+||.. T Consensus 77 ~~~~~~~fPGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivNgHgGN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (260) T 1v7z_A 77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYWDF 156 (260) T ss_dssp HHHSCTTSSSCBCBCHHHHHHHHHHHHHHHHHHTCCEEEEEECSGGGHHHHHHHHHHHHHHHHHTTCCCCEEEEEEGGGG T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 57655677864760738899999999999998088659998227776378999999999998653377516999861112 Q ss_pred CCHHH-H---C-CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCC Q ss_conf 56564-1---3-66556678868779999999978132683324667644320001340001377633202288809881 Q gi|254780633|r 148 TIPQG-I---I-SFPETEIGIHGGEIETSMMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKG 222 (267) Q Consensus 148 ~~~~~-~---~-~~~~~~~g~HAge~ETS~~lal~PelV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G 222 (267) ..... . . .......++|||+.|||+|||++|++|+++++.+..+...... ...+|..++++++| T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~HAg~~ETS~~l~l~PelV~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~G 225 (260) T 1v7z_A 157 VKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLVDLDRVVDHPPATFPPY-----------DVFPVDPARTPAPG 225 (260) T ss_dssp CCCHHHHHHHCTTCCCCSTTCSSSHHHHHHHHHHCGGGBCGGGCCCCCCCCCCSS-----------EEESCCGGGSCTTS T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCHHHHCCCCCCCCCCC-----------CCCCCCHHHCCCCC T ss_conf 3561667664224545668877778999999986967427233111587668832-----------23346675419998 Q ss_pred CEECCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 041443079999999999999999999999 Q gi|254780633|r 223 VVGNAMDATVKKGEGLLSYFANCFIQLLND 252 (267) Q Consensus 223 v~GdP~~At~E~G~~~~~~~v~~l~~~i~e 252 (267) ++|||+.||+|+|+++++.++++++++|++ T Consensus 226 v~Gdp~~As~e~G~~~~~~~~~~l~~~i~~ 255 (260) T 1v7z_A 226 TLSSAKTASREKGELILEVCVQGIADAIRE 255 (260) T ss_dssp CSSCCTTCCHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 671715323999999999999999999983 No 2 >>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} (A:1-152,A:296-319) Probab=90.19 E-value=1.4 Score=23.72 Aligned_cols=71 Identities=8% Similarity=0.152 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 6789999999999983566773999140232678011368-873330999999999999999997499889997398786 Q gi|254780633|r 42 TDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 42 tD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) -|.++--.+...+.+..+.+.-.+|+|-+| |+-.+..| +|-.+++..++ ++-|...|+.+++.++-|-.+ T Consensus 68 nd~lmeLlll~dAlr~~gA~rItlViPYl~--YsRQDR~~~~G~e~isak~v-------A~ll~~~Gvd~vitvD~H~~~ 138 (176) T 3dah_A 68 NDNLMELMIMVDALKRASAGRITAAIPYFG--YARQDRRPRSARVAISAKVV-------ANMLEIAGVERIITMDLHADQ 138 (176) T ss_dssp HHHHHHHHHHHHHHHHTTBSEEEEEESSCT--TTTCCSCCTTCCCCCHHHHH-------HHHHHHHTCCEEEEESCSCGG T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCCCCCCCCCHHHHHH-------HHHHCCCCCCEEEEECCCCHH T ss_conf 067999999999998738976999963673--03688776788667379999-------975431589879998179768 Q ss_pred H Q ss_conf 7 Q gi|254780633|r 121 S 121 (267) Q Consensus 121 ~ 121 (267) . T Consensus 139 i 139 (176) T 3dah_A 139 I 139 (176) T ss_dssp G T ss_pred H T ss_conf 8 No 3 >>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A (A:1-147,A:293-326) Probab=87.81 E-value=2 Score=22.66 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 78999999999998356677399914023267801136887333099999999999999999749988999739878 Q gi|254780633|r 43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 (267) Q Consensus 43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG 119 (267) |.++--.+.-.+++..+.+.-.+|+| ++||+-....|-..-+++..+ +++-|...|+.+++.++-|-. T Consensus 65 d~lmELlllidAlr~~gA~~ItlViP--Yl~YaRQDR~~~~GE~isak~-------vA~lL~~~G~d~vitvD~Hs~ 132 (181) T 2h06_A 65 DNLMELLIMINACKIASASRVTAVIP--CFPYARQDKKDKSRAPISAKL-------VANMLSVAGADHIITMDLHAS 132 (181) T ss_dssp HHHHHHHHHHHHHHTTTBSEEEEEES--SCTTTTCCSCSSSSCCCHHHH-------HHHHHHHHTCCEEEEESCSSG T ss_pred HHHHHHHHHHHHHHHCCCCCCEEECC--CCCCCCCCCCCCCCCCEEHHH-------HHHHHHHCCCCEEEEECCCHH T ss_conf 67999999999987606654047414--331222464347886212999-------999998638872899806868 No 4 >>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} (A:1-153,A:296-317) Probab=87.75 E-value=2 Score=22.63 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=41.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 789999999999983566773999140232678011368873330999999999999999997499889997398786 Q gi|254780633|r 43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) |.++--.+.-.+++..+.+.-.+|+|-++| +-.+..|-..-.++..+ +++-|...|+.+++.++-|-.+ T Consensus 71 d~lmELll~idAlr~~gA~rItlViPYl~Y--aRQDr~~~~ge~isak~-------vA~lL~~~Gvd~vitvD~Hs~~ 139 (175) T 1dku_A 71 EHIMELLIMVDALKRASAKTINIVIPYYGY--ARQDRKARSREPITAKL-------FANLLETAGATRVIALDLHAPQ 139 (175) T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEESSCTT--TTCCSCSSTTCCCHHHH-------HHHHHHHHTCCEEEEESCSSGG T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCCCCHHHHH-------HHHHHHHCCCCEEEEECCCCHH T ss_conf 549999988877763455347883364214--40232257888715788-------8656653288768996268588 No 5 >>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} (A:1-142,A:271-284) Probab=81.49 E-value=3.9 Score=20.84 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=43.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 26789999999999983566773999140232678011368-87333099999999999999999749988999739878 Q gi|254780633|r 41 NTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 (267) Q Consensus 41 gtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG 119 (267) ..|.++.-.+...+++..+.+.-.+|+|-++| |-....| || -.++..+ +..|...|+.+++.++-|-. T Consensus 59 ~~d~l~eLlll~~alr~~ga~~i~lViPYl~Y--sRQDR~~~~g-e~isak~--------~a~lls~g~d~vitvDlHs~ 127 (156) T 1u9y_A 59 QNDAIVETILLCDALRDEGVKKITLVAPYLAY--ARQDKKFNPG-EAISIRA--------LAKIYSNIVDKLITINPHET 127 (156) T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSSCTT--CSCSSCSSTT-BCCHHHH--------HHHHHHHHCSEEEEESCSCG T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC--CCCCCHHCCH-HHHHHHH--------HHHHHHHCCCHHHCCCCCHH T ss_conf 54237889999999998564663211222332--2146110220-2577899--------99999742560121076123 Q ss_pred C Q ss_conf 6 Q gi|254780633|r 120 N 120 (267) Q Consensus 120 N 120 (267) + T Consensus 128 ~ 128 (156) T 1u9y_A 128 H 128 (156) T ss_dssp G T ss_pred E T ss_conf 0 No 6 >>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* (A:1-175,A:352-379) Probab=69.39 E-value=8.1 Score=18.81 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 789999999999983566773999140232678011368-873330999999999999999997499889997398786 Q gi|254780633|r 43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) |.++--.+...+++..+.+.-.+|+|-++ |+-....| +|.++- ..++.-|...|+.+++.++-|-.+ T Consensus 94 d~lmELlllidAlr~~gA~~ItlViPYl~--YaRQDr~~~~g~~~a---------~~va~~L~~~g~d~VitvD~Hs~~ 161 (203) T 2ji4_A 94 TTIMELLIMVYACKTSCAKSIIGVIPYFP--YSKQCKMRKRGSIVS---------KLLASMMCKAGLTHLITMDLHQKE 161 (203) T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECSSCS--SCCC-------CCHH---------HHHHHHHHHTTCCEEEEESCSSGG T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCCCCCCCCCCHH---------HHHHHHHHHCCCCEEEEECCCCHH T ss_conf 78999999999998737752589722456--432452002565058---------899877775288722254137355 No 7 >>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* (A:1-130,A:200-276) Probab=52.58 E-value=16 Score=16.91 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=53.0 Q ss_pred HHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 98356677399914023267801136887333099999999999999999749988999739878678999999998635 Q gi|254780633|r 55 KSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR 134 (267) Q Consensus 55 a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~ 134 (267) +..+.+...+++.-...+|.|..+... .++.+...++..-+.+.+.++++++..--|-.-++..+++.-..+ T Consensus 47 ~~~La~g~~Vi~~d~pG~G~S~~~~~~--------~~~~~~a~~i~~~l~~l~~~~i~ivGhSmGG~iAl~lA~~~~p~r 118 (207) T 2wj6_A 47 IQELDADFRVIVPNWRGHGLSPSEVPD--------FGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPER 118 (207) T ss_dssp HHHHTTTSCEEEECCTTCSSSCCCCCC--------CCHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHHHHHHHHHHHHHH T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCHHH T ss_conf 999827998999828999999999999--------999999999999999728887699974377899999998738355 Q ss_pred CCEEEEEECCCCCCCHHHH Q ss_conf 5839998247654565641 Q gi|254780633|r 135 FSMLVVSTSWSRFTIPQGI 153 (267) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (267) ....+.. +.....++..+ T Consensus 119 V~glVli-~~~~~~~~~~~ 136 (207) T 2wj6_A 119 APRGIIM-DWLMWGSPMQM 136 (207) T ss_dssp SCCEEEE-SCCCSCCHHHH T ss_pred EEEEEEE-CCCCCCCCHHH T ss_conf 4179998-77767671336 No 8 >>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DNA binding protein; 1.70A {Thermus thermophilus HB8} (A:) Probab=51.37 E-value=17 Score=16.79 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=37.3 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEE Q ss_conf 0999999999999999997499889997398786789999999986355839 Q gi|254780633|r 87 LTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSML 138 (267) Q Consensus 87 l~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~ 138 (267) ++.+--...|.+.+......|.+.+.||-|.|.+ .|+.+.+++-.+++.. T Consensus 12 ~~~~eA~~~l~~~l~~a~~~~~~~v~IIhGkG~g--vLk~~v~~~L~~~~~V 61 (83) T 2zqe_A 12 LTVAEALLEVDQALEEARALGLSTLRLLHGKGTG--ALRQAIREALRRDKRV 61 (83) T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTS--HHHHHHHHHHHHCTTE T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCCC T ss_conf 9899999999999999998698289998588868--9999999999659977 No 9 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243) Probab=47.79 E-value=19 Score=16.43 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 99999999999974998899973987867899 Q gi|254780633|r 93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPLV 124 (267) Q Consensus 93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l 124 (267) ..-...+++.|...|+|+|.+++++..+.... T Consensus 3 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~ 34 (133) T 2rgy_A 3 RRGGELAAATLIEHGHRKLAVISGPFTASDNV 34 (133) T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCTTCHHHH T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 21100024567653001100024675544311 No 10 >>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} (A:) Probab=44.93 E-value=21 Score=16.16 Aligned_cols=29 Identities=3% Similarity=0.090 Sum_probs=20.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43079999999999999999999999995 Q gi|254780633|r 227 AMDATVKKGEGLLSYFANCFIQLLNDINS 255 (267) Q Consensus 227 P~~At~E~G~~~~~~~v~~l~~~i~e~~~ 255 (267) ......+...+-....++++++.++.++. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 196 (199) T 2zki_A 168 SKEELDEMERKIARFQGKRITEVAKAIKC 196 (199) T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88999999999999999999999999856 No 11 >>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* (A:1-211) Probab=43.66 E-value=22 Score=16.03 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=24.5 Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 330999999999999999997499889997398786 Q gi|254780633|r 85 KTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 85 isl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) +.+...++ |.-+++.|.++|+++|+++.||..+ T Consensus 26 l~i~gkpi---i~~~i~~l~~~gi~~iviv~g~~~~ 58 (211) T 2ggo_A 26 VPILSKPL---IEYQIEYLRKCGIRDITVIVSSKNK 58 (211) T ss_dssp CEETTEEH---HHHHHHHHHHTTCCEEEEEECGGGH T ss_pred CEECCEEH---HHHHHHHHHHCCCCEEEEEECCCHH T ss_conf 18998469---9999999998799889999698739 No 12 >>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} (A:) Probab=40.00 E-value=25 Score=15.67 Aligned_cols=44 Identities=5% Similarity=-0.064 Sum_probs=30.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECC Q ss_conf 9999999997499889997398786789999999986355839998247 Q gi|254780633|r 96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSW 144 (267) Q Consensus 96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~ 144 (267) +...++.|.++|.++|++++-|+... +.+.+...+...++.+++ T Consensus 139 ~~~a~~~Lk~~Ga~~I~~~~~h~~~~-----a~~~i~~~~~~~~i~t~t 182 (208) T 1v9s_A 139 ASLALSLLKERGATGVKLXAILAAPE-----GLERIAKDHPDTEVVVAA 182 (208) T ss_dssp HHHHHHHHHHTTCCSCEEEEEEECHH-----HHHHHHHHCTTCEEEEEE T ss_pred HHHHHHHHHHCCCCCEEEEEEEECHH-----HHHHHHHHCCCCEEEEEE T ss_conf 99999999865998469999985478-----999999878798899998 No 13 >>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} (A:) Probab=38.55 E-value=26 Score=15.53 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=30.5 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCC Q ss_conf 99999999974998899973987867899999999863558399982476 Q gi|254780633|r 96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWS 145 (267) Q Consensus 96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~ 145 (267) +...++.|.++|.++|++++.|+.. .+.+++...+...+++++.- T Consensus 149 ~~~a~~~L~~~Ga~~I~~~~~~~~~-----~~~~~i~~~~~~~ii~T~ti 193 (216) T 1xtt_A 149 MLKVLEEVVKANPKRIYIVSIISSE-----YGVNKILSKYPFIYLFTVAI 193 (216) T ss_dssp HHHHHHHHGGGCCSEEEEECSEEEH-----HHHHHHHHHCTTSEEEESEE T ss_pred HHHHHHHHHHCCCCEEEEEEEEECH-----HHHHHHHHHCCCCEEEEEEE T ss_conf 9999999851599769999998659-----99999998794988999996 No 14 >>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} (A:) Probab=38.54 E-value=23 Score=15.92 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.9 Q ss_pred CCCEECCH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH Q ss_conf 87333099-999999999999999749988999739878678 Q gi|254780633|r 82 DGTKTLTY-AEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122 (267) Q Consensus 82 pGTisl~~-~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~ 122 (267) -||||++. .+..++..+|.+.--..|-+.+.|+..+++|.. T Consensus 40 ~GtVSv~~~~s~~d~~~~la~kAd~~GA~yy~Iis~~~~~~~ 81 (99) T 2noc_A 40 IGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKI 81 (99) T ss_dssp EEEEECCSCCCHHHHHHHHHHHHHHTCCSEEECCSCCSSSSC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE T ss_conf 159998898996999999999999849988999961899958 No 15 >>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} (A:) Probab=37.68 E-value=27 Score=15.44 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=41.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 6522678999999999998356677399914023267801136887333099999999999999999749988999 Q gi|254780633|r 38 LPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVI 113 (267) Q Consensus 38 lPlgtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivi 113 (267) +|+|++.=...++++.++..-.......+-| +.=+|--..+.+.+++.+..+.+...|..|++. T Consensus 15 ~P~g~~~svs~~V~~~i~~i~~sGl~y~v~p------------mgT~IEGe~dev~~~vk~~~e~~~~~G~~RV~t 78 (109) T 1yqh_A 15 VPQAKTKDVYSVVDKAIEVVQQSGVRYEVGA------------XETTLEGELDVLLDVVKRAQQACVDAGAEEVIT 78 (109) T ss_dssp EEECSSSCHHHHHHHHHHHHHHSCSEEEECS------------SCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEE T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEECC------------CCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 8468998579999999999997499658669------------825797689999999999999999769986999 No 16 >>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:) Probab=36.33 E-value=29 Score=15.31 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=37.6 Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHHHCCEEEEEECCCC Q ss_conf 330999999999999999997499889997398-78678999999998635583999824765 Q gi|254780633|r 85 KTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNSPLVSIVSTEARMRFSMLVVSTSWSR 146 (267) Q Consensus 85 isl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~~~l~~a~~~l~~~~~~~~~~~~~~~ 146 (267) ++++.+++.++.+.+..-....|+||++|=--- -.-...+..+.+.+-..-+.-....-|-. T Consensus 10 vsv~~e~~~nffR~~~kD~R~~GskK~vINvis~i~~~e~v~~aREAlLdNIDlG~eiy~WK~ 72 (126) T 2rbg_A 10 ISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKK 72 (126) T ss_dssp EECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECG T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECH T ss_conf 854666579999999999985588528999854686799999999998843454528998678 No 17 >>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} (A:) Probab=36.19 E-value=29 Score=15.30 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHH-----HHCCCCEEEEECCCC----CCHHHHHHHHHHHHHHCCE Q ss_conf 999999999999999-----974998899973987----8678999999998635583 Q gi|254780633|r 89 YAEAIEHWLAIIDAI-----RKMGIRKIVILNAHG----GNSPLVSIVSTEARMRFSM 137 (267) Q Consensus 89 ~~t~~~~l~di~~sl-----~~~Gf~~iviiNgHg----GN~~~l~~a~~~l~~~~~~ 137 (267) .+.-...|...+... ...|.+.+.||.|.| ++.+.++.+.+++-.+.+. T Consensus 10 v~eA~~~l~~~l~~~~~~~~~~~~~~~v~IItG~G~hS~~g~~~lk~~V~~~L~~~~~ 67 (82) T 3fau_A 10 VDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF 67 (82) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 9999999999999999888876797069999797768999964089999999986897 No 18 >>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244) Probab=36.02 E-value=29 Score=15.28 Aligned_cols=29 Identities=7% Similarity=-0.133 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 99999999997499889997398786789 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~ 123 (267) -...+++-|.++|.|+|.+|++.-++... T Consensus 4 ~~~~a~~~L~~~G~r~i~~i~~~~~~~~~ 32 (134) T 3g85_A 4 XGEKASLLFAKKRYKSAAAILTESLNDAX 32 (134) T ss_dssp HHHHHHHHHHHTTCCBCEEEECCCSSHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHH T ss_conf 44556543310222222223566442177 No 19 >>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241) Probab=33.67 E-value=31 Score=15.04 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 9999999999974998899973987867899 Q gi|254780633|r 94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPLV 124 (267) Q Consensus 94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l 124 (267) .-..++++.|.+.|+|+|.+|++...+.... T Consensus 3 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~ 33 (136) T 2qu7_A 3 EAAYIATKRVLESTCKEVGLLLANPNISTTI 33 (136) T ss_dssp HHHHHHHHHHHTSSCCCEEEEECCTTSHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHH T ss_conf 7777777777652256125894053103667 No 20 >>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231) Probab=33.33 E-value=32 Score=15.00 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHHHHHHHCCEE Q ss_conf 99999999997499889997398786789999--999986355839 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHGGNSPLVSI--VSTEARMRFSML 138 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~--a~~~l~~~~~~~ 138 (267) -..++++-|.++|+|||.++.+=-.+....+. ..++.-++++.. T Consensus 4 ~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 49 (130) T 3cs3_A 4 GATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP 49 (130) T ss_dssp HHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 0122332101222345433457866623343226899999984997 No 21 >>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} (A:118-249) Probab=33.20 E-value=32 Score=14.99 Aligned_cols=54 Identities=11% Similarity=-0.059 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECC Q ss_conf 999999999999997---499889997398786789999999986355839998247 Q gi|254780633|r 91 EAIEHWLAIIDAIRK---MGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSW 144 (267) Q Consensus 91 t~~~~l~di~~sl~~---~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~ 144 (267) .+..+|.+-+++... ..=+.-+++-+||...+.....++.++++.+...+...+ T Consensus 4 ~i~~~l~~ri~~~~~~~~~~~~~~vvlvaHGS~~~~~~~~~~~l~~~~~~~~v~~~~ 60 (132) T 2jh3_A 4 GMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVL 60 (132) T ss_dssp THHHHHHHHHHHHSCTTCCGGGCEEEEEESSTTCHHHHHHHHHHHHHCCSSEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 789999999999862157767549999815775420699999999846888658999 No 22 >>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} (A:1-126) Probab=32.13 E-value=33 Score=14.88 Aligned_cols=17 Identities=29% Similarity=0.053 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 99999999999835667 Q gi|254780633|r 45 IIAAGLAERIKSILPPR 61 (267) Q Consensus 45 ~~a~~ia~~~a~~~~~~ 61 (267) -.+..+++++++.++.. T Consensus 18 ~~g~~la~~l~~~l~~~ 34 (126) T 3eeq_A 18 EDAFSAGETIKEKLKSF 34 (126) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 73699999999876745 No 23 >>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:49-259,A:360-538) Probab=31.05 E-value=35 Score=14.77 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=8.5 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 99999999749988999 Q gi|254780633|r 97 LAIIDAIRKMGIRKIVI 113 (267) Q Consensus 97 ~di~~sl~~~Gf~~ivi 113 (267) ..+++.|...|.--|.+ T Consensus 132 ~~~vk~lveaGiagV~i 148 (390) T 1dqu_A 132 MKLTKLFVERGAAGIHI 148 (390) T ss_dssp HHHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHCCCCEEEE T ss_conf 99999999758708874 No 24 >>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP} (A:215-293) Probab=31.04 E-value=35 Score=14.76 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.0 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 9999999997499889997398786 Q gi|254780633|r 96 WLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 96 l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) +.-+++.|.+.|++|.++|.|.+|- T Consensus 21 ~~~~a~~l~~lg~~ra~Vv~G~~G~ 45 (79) T 1vqu_A 21 LTTVAQALDNLGKQKAIVLHGRERL 45 (79) T ss_dssp HHHHHHHHHHTTCSEEEEEEETTTB T ss_pred HHHHHHHHHHCCCCHHEEECCCCCC T ss_conf 5168999997497410211033543 No 25 >>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} (A:) Probab=29.86 E-value=36 Score=14.64 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCC Q ss_conf 99999999974998899973987867899999999863558399982476 Q gi|254780633|r 96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWS 145 (267) Q Consensus 96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~ 145 (267) +...++.|..+|.++|+++.-|+-. ...+++...+...++.++.- T Consensus 152 ~~~a~~~Lk~~Ga~~I~~~~~h~~~-----~g~~~i~~~~~~~~i~T~si 196 (221) T 1o5o_A 152 SIKAIEILKENGAKKITLVALIAAP-----EGVEAVEKKYEDVKIYVAAL 196 (221) T ss_dssp HHHHHHHHHHTTCCEEEEECSEECH-----HHHHHHHHHCTTCEEEESEE T ss_pred HHHHHHHHHHCCCCCEEEEEEEECH-----HHHHHHHHHCCCCEEEEEEE T ss_conf 9999999986699838999987468-----99999998788988999985 No 26 >>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:108-274) Probab=29.11 E-value=37 Score=14.56 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=31.5 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 9999974998899973987867899999999863558399982 Q gi|254780633|r 100 IDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVST 142 (267) Q Consensus 100 ~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~ 142 (267) .+.+...+.++|+++.|-..|...++...+++..+.+...++. T Consensus 122 ~~a~~~~~i~~iv~~GG~va~N~~lr~~l~~~~~~~~~~~~fp 164 (167) T 2ews_A 122 ITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYV 164 (167) T ss_dssp HHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEEC T ss_pred HHHHHCCCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 9975423989399989626504999999999997689989968 No 27 >>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} (A:) Probab=28.47 E-value=26 Score=15.59 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=32.9 Q ss_pred HCCCCC-CEECCH---HHHHHHHHHHHHHH-----HHCCCCEEEEECC-C-CCCH Q ss_conf 136887-333099---99999999999999-----9749988999739-8-7867 Q gi|254780633|r 78 HMYVDG-TKTLTY---AEAIEHWLAIIDAI-----RKMGIRKIVILNA-H-GGNS 121 (267) Q Consensus 78 h~~fpG-Tisl~~---~t~~~~l~di~~sl-----~~~Gf~~iviiNg-H-gGN~ 121 (267) ...|+| ++-+++ .+|..+|.++.+.| ...|.|+|+=.+| | -.+. T Consensus 20 D~~~~g~~~~i~~~~~~t~d~lL~~lt~~l~~~~~l~~~Vr~lyT~~G~~~V~~l 74 (116) T 1uf0_A 20 DRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSL 74 (116) T ss_dssp CSSCCCEEEEECTTTCCSHHHHHHHHHHHSCCSSSCSSCCCEEEESSSSCEECST T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCH T ss_conf 9899989999896424899999999999871147898772499869998085899 No 28 >>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293) Probab=28.42 E-value=38 Score=14.48 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 9999999999997499889997398786789 Q gi|254780633|r 93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 (267) Q Consensus 93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~ 123 (267) .+-....++-|.+.|.|+|.++++...+... T Consensus 2 ~~a~~~a~~~L~~~G~r~I~~i~~~~~~~~~ 32 (130) T 2o20_A 2 HLAAYQSTKKLIDSGNKKIAYIMGSLKDVEN 32 (130) T ss_dssp HHHHHHHHHHHHHTTCSSEEEECSCTTSHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH T ss_conf 9999999999987188764433478778219 No 29 >>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242) Probab=28.01 E-value=39 Score=14.44 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--HHHHHHCCEEE Q ss_conf 9999999999749988999739878678999999--99863558399 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVS--TEARMRFSMLV 139 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~--~~l~~~~~~~~ 139 (267) -...+++-|.++|+|+|.+|++.-.+....+... .+...+.+... T Consensus 4 ~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~ 50 (132) T 3gv0_A 4 YAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTE 50 (132) T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 67777777631253403687177433225666788899999863110 No 30 >>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.90A {Thermus thermophilus HB8} (A:) Probab=27.72 E-value=40 Score=14.40 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=26.2 Q ss_pred CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 3330999999999999999997499889997398786 Q gi|254780633|r 84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) -+.+...+++.. +++.|..+|+++++++++|.+. T Consensus 26 Ll~i~gkpli~~---~i~~l~~~~i~~iivv~~~~~~ 59 (232) T 2dpw_A 26 LVPYRGRPXVEW---VLEALYAAGLSPVYVGENPGLV 59 (232) T ss_dssp GSEETTEETHHH---HHHHHHHTTCEEEEESCCSSCS T ss_pred EEEECCEEHHHH---HHHHHHHCCCCEEEEEECCCCC T ss_conf 169999849999---9999987899889999078433 No 31 >>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249) Probab=27.65 E-value=40 Score=14.40 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 99999999999974998899973987867 Q gi|254780633|r 93 IEHWLAIIDAIRKMGIRKIVILNAHGGNS 121 (267) Q Consensus 93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~ 121 (267) ..-..++++-|.+.|.|||.++++.-.+. T Consensus 2 ~~a~~~a~~~L~~~G~r~i~~i~~~~~~~ 30 (133) T 2fep_A 2 EQAIYDAVKLLVDKGHTDIAFVSGPMAEP 30 (133) T ss_dssp HHHHHHHHHHHHHTTCSSEEEEESCTTSH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 87899999999862994367860576655 No 32 >>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* (A:28-234,A:388-429) Probab=27.55 E-value=40 Score=14.38 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=37.5 Q ss_pred CCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 88733309999999999999999974998899973987867899999999863558399982 Q gi|254780633|r 81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVST 142 (267) Q Consensus 81 fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~ 142 (267) .+||+=-+..+ ..-...+++.|.++|+..++++.|-|.+..+...+..-.+...+..++.+ T Consensus 137 ~GGs~LGssR~-~~~~~~i~~~l~~~~I~~LviIGGdgS~~~a~~L~e~~~~~~~~i~VvgI 197 (249) T 2hig_A 137 YGGTILGSSRG-PQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGV 197 (249) T ss_dssp SSSCSSCCCCS-CCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEE T ss_pred CCCEEECCCCC-CCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 79717206899-74599999999985998899964707899999999998861898328833 No 33 >>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255) Probab=26.85 E-value=41 Score=14.30 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=52.9 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCC-CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 999999835667739991402326780113688-7333099999999999999999749988999739878678999999 Q gi|254780633|r 50 LAERIKSILPPRLPVTCMPVEPIGYSIEHMYVD-GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVS 128 (267) Q Consensus 50 ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fp-GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~ 128 (267) +.+++.+.+++..=+.++= + .+|| | +-+.+.+..+..+++..|.++|.+-+|+- -|. +-..+. T Consensus 15 Vlk~i~k~lP~~~~IY~aD------~---a~~PYG--~Ks~eeI~~~~~~iv~~L~~~~vk~IVIA----CNT-ASa~aL 78 (139) T 2jfz_A 15 VLKSLLKARLFDEIIYYGD------S---ARVPYG--TKDPTTIKQFGLEALDFFKPHEIELLIVA----CNT-ASALAL 78 (139) T ss_dssp HHHHHHHTTCCSEEEEEEC------T---TTCCCT--TSCHHHHHHHHHHHHHHHGGGCCSCEEEC----CHH-HHHHTH T ss_pred HHHHHHHHCCCCCEEEEEC------C---CCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEE----CCH-HHHHHH T ss_conf 9999999789999899953------7---889989--99999999999999998763365678870----546-877426 Q ss_pred HHHHHHCCEEEEEE Q ss_conf 99863558399982 Q gi|254780633|r 129 TEARMRFSMLVVST 142 (267) Q Consensus 129 ~~l~~~~~~~~~~~ 142 (267) +.++++++..++-+ T Consensus 79 ~~LR~~~~iPVIGv 92 (139) T 2jfz_A 79 EEMQKYSKIPIVGV 92 (139) T ss_dssp HHHHHHCSSCEECS T ss_pred HHHHHCCCEEEEEC T ss_conf 88864486179966 No 34 >>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} (A:) Probab=26.74 E-value=41 Score=14.29 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=33.2 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCC Q ss_conf 99999999999999999749988999739878678999999998635583999824765 Q gi|254780633|r 88 TYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSR 146 (267) Q Consensus 88 ~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~~ 146 (267) +..|+. ..++.|.++|.++|+++.-|+-.. ..+.+...+...+++++.-. T Consensus 135 TG~T~~----~a~~~L~~~Ga~~I~~~~~h~~~~-----g~~~i~~~~~~~~i~T~si~ 184 (208) T 2ehj_A 135 TGGSVI----ATIDLLKKAGCSSIKVLVLVAAPE-----GIAALEKAHPDVELYTASID 184 (208) T ss_dssp SCHHHH----HHHHHHHHTTCCEEEEEEEEECHH-----HHHHHHHHCTTSEEEESCBC T ss_pred CCHHHH----HHHHHHHHCCCCCEEEEEEEECHH-----HHHHHHHHCCCCEEEEEEEC T ss_conf 665699----999999847998579999961579-----99999987929789999857 No 35 >>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292) Probab=26.55 E-value=41 Score=14.27 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 9999999999974998899973987867899 Q gi|254780633|r 94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPLV 124 (267) Q Consensus 94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l 124 (267) .-....++.|.++|+|+|.+|.+.-.+...- T Consensus 3 ~~~~~a~~~l~~~G~r~I~~i~~~~~~~~~~ 33 (130) T 1jye_A 3 DGTRLGVEHLVALGHQQIALLAGPLSSVSAR 33 (130) T ss_dssp HHHHHHHHHHHHHTCCSEEEEECCTTSHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHH T ss_conf 8999999999975996699994774322899 No 36 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:1-117,A:236-266) Probab=25.22 E-value=44 Score=14.12 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=43.5 Q ss_pred ECCHHHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE Q ss_conf 309999999999999999974998----899973987867899999999863558399982 Q gi|254780633|r 86 TLTYAEAIEHWLAIIDAIRKMGIR----KIVILNAHGGNSPLVSIVSTEARMRFSMLVVST 142 (267) Q Consensus 86 sl~~~t~~~~l~di~~sl~~~Gf~----~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~ 142 (267) +.+...+.+.+.-+.+.|...|+. ++.+.|.. |+...+...++++.......++.. T Consensus 10 ~~~~~~l~~~~~gf~~~L~~~G~~e~ni~i~~~~A~-~D~~~l~~ia~~l~~~~~DlIva~ 69 (148) T 3lft_A 10 FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFXNSE-GDQSKVATXSKQLVANGNDLVVGI 69 (148) T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 877738999999999999975998760799996798-899999999999974698679844 No 37 >>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} (A:) Probab=24.36 E-value=45 Score=14.01 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=39.5 Q ss_pred CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC Q ss_conf 8733309999999999999999974998899973987867899999999863558 Q gi|254780633|r 82 DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFS 136 (267) Q Consensus 82 pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~ 136 (267) +..|.+.......++...+..|.+.|++.++|- |-|.++.=.-.++..++.+++ T Consensus 6 ~n~I~v~~k~~~~yv~~a~~~l~~~~~~~V~i~-g~G~AI~kAV~vaEilkrr~~ 59 (102) T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVK-ARGRNINRAVDAVEIVRKRFA 59 (102) T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEE-EETTHHHHHHHHHHHHHHHTT T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE-EECCCHHHHHHHHHHHHHHCC T ss_conf 978999797789999999999861898679999-855305568889999998635 No 38 >>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} (A:1-222) Probab=24.28 E-value=46 Score=14.00 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=27.0 Q ss_pred CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 7333099999999999999999749988999739878 Q gi|254780633|r 83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 (267) Q Consensus 83 GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG 119 (267) .-+.+...+++.. +++.|.++|+.+++++.++.. T Consensus 26 ~li~i~gkpli~~---~i~~l~~~g~~~ivv~~~~~~ 59 (222) T 1hv9_A 26 VLHTLAGKAMVQH---VIDAANELGAAHVHLVYGHGG 59 (222) T ss_dssp GGSEETTEEHHHH---HHHHHHHHTCSCEEEEECSCH T ss_pred HHEEECCEEHHHH---HHHHHHHCCCCEEEEECCCCH T ss_conf 7518997239999---999999779985999938998 No 39 >>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} (A:1-78) Probab=24.25 E-value=46 Score=14.00 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 999999999974998899973987867 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHGGNS 121 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHgGN~ 121 (267) -+.++...+..+||.|+.++++..+|. T Consensus 22 ~~~e~~~~~~~~~~sr~PV~~~~~d~i 48 (78) T 3hf7_A 22 DWKSIVRQLTHSPHGRIVLYRDSLDDA 48 (78) T ss_dssp CHHHHHHHHHTCSSSEEEEESSSGGGE T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 989999999855765103654555454 No 40 >>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182) Probab=24.12 E-value=46 Score=13.98 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=15.5 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 999999999749988999739878678999999998 Q gi|254780633|r 96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEA 131 (267) Q Consensus 96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l 131 (267) +..+++.+...+.+||+|+ |.|++..+...+...+ T Consensus 5 i~~~v~~l~~~~a~~I~~~-G~G~S~~~a~~~~~~l 39 (149) T 3knz_A 5 LWRAAQALTERGVTRIILT-GSGTSYHGALTARTFX 39 (149) T ss_dssp HHHHHHHHHHTTCCEEEEE-CCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEE-EECHHHHHHHHHHHHH T ss_conf 9999999986799989999-9507999999999999 No 41 >>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:1-40,A:218-296) Probab=23.61 E-value=47 Score=13.92 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=44.7 Q ss_pred CEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH---HHHHHHHHHHHHCCEEEEEEC Q ss_conf 3330999999999999999997499-88999739878678---999999998635583999824 Q gi|254780633|r 84 TKTLTYAEAIEHWLAIIDAIRKMGI-RKIVILNAHGGNSP---LVSIVSTEARMRFSMLVVSTS 143 (267) Q Consensus 84 Tisl~~~t~~~~l~di~~sl~~~Gf-~~iviiNgHgGN~~---~l~~a~~~l~~~~~~~~~~~~ 143 (267) -|....+.+...+..++..+.+... .+++|.||+. +.+ -+..+.+++++.++..-++.+ T Consensus 42 eLP~d~e~ak~~ld~~l~kLe~~A~T~nILLPnG~D-Q~PIq~nLpE~I~~~Ne~ypd~efviS 104 (119) T 2wyh_A 42 EIPTTEAEARLFWDKKLADAERFASTKHLLMMNGCD-HQPVQLDVTKAIALANQLYPDYEFVHS 104 (119) T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHCSSSEEEEEECCB-TCCCCTTHHHHHHHHHHHCTTEEEEEC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCCCCHHHHHHHHHHHHCCCCCCEEEC T ss_conf 588528899999998887787514568468736879-997554299999988753898618975 No 42 >>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} (A:1-112) Probab=23.19 E-value=48 Score=13.87 Aligned_cols=52 Identities=8% Similarity=-0.043 Sum_probs=26.7 Q ss_pred CCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 7801136887333099999999999999999749988999739878678999999998635 Q gi|254780633|r 74 YSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR 134 (267) Q Consensus 74 ~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~ 134 (267) +...| .||.+.++.+.+...+.++ ... -.+.|++.+.+|+.. ..+++.++.. T Consensus 35 ~~~~h--ipgA~~i~~~~~~~~~~~~----~~~-~~~~iv~~c~~g~~a--~~~~~~L~~~ 86 (112) T 1yt8_A 35 FAQAH--PLFAANLPLSRLELEIHAR----VPR-RDTPITVYDDGEGLA--PVAAQRLHDL 86 (112) T ss_dssp HTTSB--CTTCEECCGGGHHHHHHHH----SCC-TTSCEEEECSSSSHH--HHHHHHHHHT T ss_pred HHCCC--CCCCEECCHHHHHHHHHHH----CCC-CCCEEEEEECCCCHH--HHHHHHHHHC T ss_conf 84488--9998877889999999984----799-998699997998889--9999999975 No 43 >>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus} (A:127-194) Probab=22.97 E-value=34 Score=14.79 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=8.9 Q ss_pred CCCCCEECCCCC Q ss_conf 988104144307 Q gi|254780633|r 219 NPKGVVGNAMDA 230 (267) Q Consensus 219 s~~Gv~GdP~~A 230 (267) .++|++|||+.. T Consensus 18 ~~dGviGDP~~v 29 (68) T 2flq_A 18 TEEGIIGDSSSL 29 (68) T ss_dssp CSSSEEECGGGH T ss_pred CCCCCCCCCHHH T ss_conf 889867783166 No 44 >>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A* (A:165-307) Probab=22.94 E-value=48 Score=13.84 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCC Q ss_conf 9999999999835667739991402326780113688733309999999999999999974998899973-----98786 Q gi|254780633|r 46 IAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILN-----AHGGN 120 (267) Q Consensus 46 ~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiN-----gHgGN 120 (267) -.+..++.++++++-.....++ ....+.+.=++.|+| .|.++.|.+.|+|+++++- .|-.- T Consensus 51 q~~~t~~~i~~~l~~~~~~~~~---------~QS~~g~~~Wl~P~~-----~~~l~~l~~~G~k~v~v~p~gF~sD~lET 116 (143) T 3hcn_A 51 EVSATVQKVMERLEYCNPYRLV---------WQSKVGPMPWLGPQT-----DESIKGLCERGRKNILLVPIAFTSDHIET 116 (143) T ss_dssp HHHHHHHHHHHHTTTCSCEEEE---------EECCSCSSCBSSSBH-----HHHHHHHHHTTCCEEEEECTTCCSCCCCC T ss_pred HHHHHHHHHHHHHCCCHHHHHE---------EECCCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEECCCCCCCCHHH T ss_conf 8999999999873454022210---------114779866668738-----99999999749972999797313563467 Q ss_pred HHHHHHHHHH-HHHHCCEE Q ss_conf 7899999999-86355839 Q gi|254780633|r 121 SPLVSIVSTE-ARMRFSML 138 (267) Q Consensus 121 ~~~l~~a~~~-l~~~~~~~ 138 (267) .--++.-+++ +.++.+.. T Consensus 117 lyeidie~~e~~~~~~G~~ 135 (143) T 3hcn_A 117 LYELDIEYSQVLAKECGVE 135 (143) T ss_dssp HHHHCHHHHHHHHHHTCCC T ss_pred HHHHHHHHHHHHHHHCCCC T ss_conf 9987899999999976996 No 45 >>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} (A:1-15,A:90-144) Probab=22.87 E-value=49 Score=13.83 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 999999999974998899973987 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHG 118 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHg 118 (267) -|..+++-+++.|.+|+++|+..+ T Consensus 27 tL~tVierlv~agVhRLVVVd~s~ 50 (70) T 2nyc_A 27 KLSTIMDNIRKARVHRFFVVDDVG 50 (70) T ss_dssp BHHHHHHHHHHHTCSEEEEECTTS T ss_pred CHHHHHHHHHHCCEEEEEEECCCC T ss_conf 799999988862756999991799 No 46 >>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647) Probab=22.43 E-value=45 Score=14.06 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=22.2 Q ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 09881041443079999999999999999999 Q gi|254780633|r 218 LNPKGVVGNAMDATVKKGEGLLSYFANCFIQL 249 (267) Q Consensus 218 ~s~~Gv~GdP~~At~E~G~~~~~~~v~~l~~~ 249 (267) +|..|-+..-+.++++...+-++.++..+.+. T Consensus 383 ~TeQGevi~~ky~~~~~A~r~le~~~~a~l~~ 414 (420) T 1jqn_A 383 VTEQGEMIRFKYGLPEITVSSLSLYTGAILEA 414 (420) T ss_dssp EEECGGGHHHHHSSHHHHHHHHHHHHHHHHHH T ss_pred EEECHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 62013789970499999999999999999987 No 47 >>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} (A:1-263) Probab=22.11 E-value=50 Score=13.73 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=25.6 Q ss_pred CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 3330999999999999999997499889997398786 Q gi|254780633|r 84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) -+.+...+++.+ +++.|.+.|+++|+++.||... T Consensus 28 ll~i~Gkpli~~---~l~~l~~~gi~~ivvv~~~~~~ 61 (263) T 1lvw_A 28 LLPIYDKPMIYY---PLSVLMLAGIRDILIISTPRDL 61 (263) T ss_dssp GSEETTEETTHH---HHHHHHHTTCCEEEEEECTTTH T ss_pred EEEECCEEHHHH---HHHHHHHCCCCEEEEEECCCCH T ss_conf 126999889999---9999987799869999463449 No 48 >>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254) Probab=21.98 E-value=51 Score=13.72 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 999999999997499889997398786789 Q gi|254780633|r 94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 (267) Q Consensus 94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~ 123 (267) .-...+++-|.+.|.|||.++++...+... T Consensus 4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~ 33 (133) T 3brq_A 4 QTSFNAVAELINAGHQEIAFLTGSXDSPTS 33 (133) T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHH T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 211134455434036559999577556530 No 49 >>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296) Probab=21.98 E-value=51 Score=13.72 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 999999999997499889997398786789 Q gi|254780633|r 94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 (267) Q Consensus 94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~ 123 (267) .-...+++-|.+.|.|||.++++...+... T Consensus 4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~ 33 (133) T 3dbi_A 4 QTSFNAVAELINAGHQEIAFLTGSXDSPTS 33 (133) T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHH T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHH T ss_conf 999999999998499859999789998669 No 50 >>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} (A:) Probab=21.80 E-value=51 Score=13.69 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=25.4 Q ss_pred CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 3330999999999999999997499889997398786 Q gi|254780633|r 84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 (267) Q Consensus 84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN 120 (267) -+.+...+++.+ ++..|.+.|+++++|+.++.+. T Consensus 33 llpv~g~plI~~---~i~~l~~~gi~~i~vv~~~~~e 66 (302) T 2e3d_A 33 MLPLVDKPLIQY---VVNECIAAGITEIVLVTHSSKN 66 (302) T ss_dssp GCEETTEEHHHH---HHHHHHHTTCCEEEEEECGGGH T ss_pred CCEECCEEHHHH---HHHHHHHCCCCEEEEEEECCHH T ss_conf 308999989999---9999998699889999413214 No 51 >>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:410-470) Probab=21.66 E-value=43 Score=14.17 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=22.7 Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 200124797465226789999999999983566 Q gi|254780633|r 28 LGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60 (267) Q Consensus 28 vGs~EqHGpHlPlgtD~~~a~~ia~~~a~~~~~ 60 (267) -|.+||++|=+++..-.--...|++.+|+.+.+ T Consensus 14 pG~IE~~~~Li~l~d~~~fl~~I~~~aA~~ae~ 46 (61) T 2qx5_A 14 PGVIEERQPLLHVRDEKEFLHTITEQAARRADE 46 (61) T ss_dssp CCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 467865044112224499999999999999997 No 52 >>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246) Probab=21.54 E-value=52 Score=13.66 Aligned_cols=31 Identities=6% Similarity=-0.211 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 9999999999997499889997398786789 Q gi|254780633|r 93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 (267) Q Consensus 93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~ 123 (267) ..++..+.+.+...|.+||.+++|+.++... T Consensus 10 ~~l~~~~~~~~~~~g~~~i~~i~g~~~~~~~ 40 (140) T 2fn9_A 10 EYFVKFLKEKYPDAKEIPYAELLGILSAQPT 40 (140) T ss_dssp HHHHHHHHHHCSSCSCEEEEEEECCTTCHHH T ss_pred HHHHHHHCCCCCCCCCCCEEEECCCCCCHHH T ss_conf 9999972102345655514651388775057 No 53 >>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* (A:) Probab=21.52 E-value=52 Score=13.66 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=15.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 307999999999999999999999999 Q gi|254780633|r 228 MDATVKKGEGLLSYFANCFIQLLNDIN 254 (267) Q Consensus 228 ~~At~E~G~~~~~~~v~~l~~~i~e~~ 254 (267) .....+...+..+...+++++.++.++ T Consensus 171 ~~~~~~~~~~~a~~~~~~la~~~~~l~ 197 (198) T 3b6i_A 171 SRQPSQEELSIARYQGEYVAGLAVKLN 197 (198) T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 789499999999999999999999714 No 54 >>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} (A:) Probab=21.47 E-value=52 Score=13.65 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=36.4 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCH Q ss_conf 9999999983566773999140232678011368873330999999999999999997499889997398-7867 Q gi|254780633|r 48 AGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNS 121 (267) Q Consensus 48 ~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~ 121 (267) ..++..+++ +...++..=-.-+|.|.... ...+......|+...+.+.+..+.+++-|| +|-. T Consensus 40 ~~~~~~L~~---~g~~v~~~D~~G~G~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~S~Gg~ 103 (277) T 1brt_A 40 ERQSAALLD---AGYRVITYDRRGFGQSSQPT--------TGYDYDTFAADLNTVLETLDLQDAVLVGFSTGTGE 103 (277) T ss_dssp HHHHHHHHH---TTCEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHH T ss_pred HHHHHHHHH---CCCEEEEECCCCCCCCCCCC--------CCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHH T ss_conf 999999996---89989997179987765545--------42212220110345666506542223233332035 No 55 >>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} (A:) Probab=21.34 E-value=52 Score=13.64 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHH Q ss_conf 999999999983566773999140232678011368873330999999999999999997499889997398-78678 Q gi|254780633|r 46 IAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNSP 122 (267) Q Consensus 46 ~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~~ 122 (267) .-..++..+++ ....++..--.-+|.|.... ...+...+..|+..-+...+.++.+++-+| ||... T Consensus 38 ~~~~~~~~L~~---~g~~v~~~D~~G~G~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vg~s~~G~~~ 104 (279) T 1hkh_A 38 SWERQTRELLA---QGYRVITYDRRGFGGSSKVN--------TGYDYDTFAADLHTVLETLDLRDVVLVGFSMGTGEL 104 (279) T ss_dssp GGHHHHHHHHH---TTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHHTCCSEEEEEETHHHHHH T ss_pred HHHHHHHHHHH---CCCEEEEEECCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 99999999997---89989998189999999999--------999999999999987886299977999964643554 No 56 >>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223) Probab=21.15 E-value=53 Score=13.61 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC--H-HHHHHHHHHHHHHCCEEE Q ss_conf 99999999997499889997398786--7-899999999863558399 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHGGN--S-PLVSIVSTEARMRFSMLV 139 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHgGN--~-~~l~~a~~~l~~~~~~~~ 139 (267) -..+.++-|.++|+|+|.++++--.+ . .--....++.-.+++... T Consensus 4 a~~~a~~~l~~~G~r~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~ 51 (125) T 1byk_A 4 AIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP 51 (125) T ss_dssp HHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999985114432357666765077777677999999739976 No 57 >>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophilum, structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} (A:) Probab=20.59 E-value=54 Score=13.54 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.9 Q ss_pred CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 73330999999999999999997499889997398 Q gi|254780633|r 83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH 117 (267) Q Consensus 83 GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH 117 (267) +...+.+.....+..++++.+.+.||++++++.|= T Consensus 94 ~~~p~~~~~~~~~~~~i~~~~~~~gv~~vi~l~g~ 128 (252) T 3gaa_A 94 CEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGS 128 (252) T ss_dssp ESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEE T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 03689812799999999999997499769997032 No 58 >>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278) Probab=20.38 E-value=55 Score=13.51 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 999999999974998899973987 Q gi|254780633|r 95 HWLAIIDAIRKMGIRKIVILNAHG 118 (267) Q Consensus 95 ~l~di~~sl~~~Gf~~iviiNgHg 118 (267) -+.+.++-+.+++|+++.+++..| T Consensus 14 ~i~~a~~~m~~~~~~~lpVvD~~g 37 (75) T 2yvy_A 14 DQEEVARLMADYDFTVLPVVDEEG 37 (75) T ss_dssp BHHHHHHHHHHHTCSEEEEECTTS T ss_pred CHHHHHHHHHHCCCEEEEEECCCC T ss_conf 799999999974980898986899 No 59 >>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} (A:120-236) Probab=20.37 E-value=55 Score=13.51 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=17.3 Q ss_pred HHHHHHHHHCCCCEEEEECCC Q ss_conf 999999997499889997398 Q gi|254780633|r 97 LAIIDAIRKMGIRKIVILNAH 117 (267) Q Consensus 97 ~di~~sl~~~Gf~~iviiNgH 117 (267) ..++..|..+|+++|.|+|=. T Consensus 16 ~ai~~~L~~~g~~~i~I~~R~ 36 (117) T 3fbt_A 16 RAVLQYLKDNFAKDIYVVTRN 36 (117) T ss_dssp HHHHHHHHHTTCSEEEEEESC T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 223333441555269987400 Done!