Query         gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 267
No_of_seqs    115 out of 722
Neff          7.4 
Searched_HMMs 33803
Date          Wed Jun  1 15:02:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780633.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1v7z_A Creatininase, creatini 100.0       0       0  459.0  24.1  237    1-252     1-255 (260)
  2 >3dah_A Ribose-phosphate pyrop  90.2     1.4 4.1E-05   23.7   7.7   71   42-121    68-139 (176)
  3 >2h06_A Ribose-phosphate pyrop  87.8       2   6E-05   22.7   7.6   68   43-119    65-132 (181)
  4 >1dku_A Protein (phosphoribosy  87.7       2   6E-05   22.6   7.6   69   43-120    71-139 (175)
  5 >1u9y_A RPPK;, ribose-phosphat  81.5     3.9 0.00011   20.8   6.6   69   41-120    59-128 (156)
  6 >2ji4_A Phosphoribosyl pyropho  69.4     8.1 0.00024   18.8   6.8   67   43-120    94-161 (203)
  7 >2wj6_A 1H-3-hydroxy-4-oxoquin  52.6      16 0.00047   16.9   7.1   90   55-153    47-136 (207)
  8 >2zqe_A MUTS2 protein; alpha/b  51.4      17  0.0005   16.8   8.3   50   87-138    12-61  (83)
  9 >2rgy_A Transcriptional regula  47.8      19 0.00056   16.4   5.1   32   93-124     3-34  (133)
 10 >2zki_A 199AA long hypothetica  44.9      21 0.00062   16.2   5.3   29  227-255   168-196 (199)
 11 >2ggo_A 401AA long hypothetica  43.7      22 0.00065   16.0   3.4   33   85-120    26-58  (211)
 12 >1v9s_A Uracil phosphoribosylt  40.0      25 0.00074   15.7   2.9   44   96-144   139-182 (208)
 13 >1xtt_A Probable uracil phosph  38.5      26 0.00078   15.5   4.1   45   96-145   149-193 (216)
 14 >2noc_A Putative periplasmic p  38.5      23 0.00068   15.9   2.4   41   82-122    40-81  (99)
 15 >1yqh_A DUF77, IG hypothetical  37.7      27  0.0008   15.4   6.3   64   38-113    15-78  (109)
 16 >2rbg_A Putative uncharacteriz  36.3      29 0.00084   15.3   3.3   62   85-146    10-72  (126)
 17 >3fau_A NEDD4-binding protein   36.2      29 0.00085   15.3   4.6   49   89-137    10-67  (82)
 18 >3g85_A Transcriptional regula  36.0      29 0.00085   15.3   4.5   29   95-123     4-32  (134)
 19 >2qu7_A Putative transcription  33.7      31 0.00093   15.0   5.1   31   94-124     3-33  (136)
 20 >3cs3_A Sugar-binding transcri  33.3      32 0.00094   15.0   3.6   44   95-138     4-49  (130)
 21 >2jh3_A Ribosomal protein S2-r  33.2      32 0.00095   15.0   4.0   54   91-144     4-60  (132)
 22 >3eeq_A Putative cobalamin bio  32.1      33 0.00098   14.9   2.7   17   45-61     18-34  (126)
 23 >1dqu_A Isocitrate lyase; beta  31.1      35   0.001   14.8   2.7   17   97-113   132-148 (390)
 24 >1vqu_A Anthranilate phosphori  31.0      35   0.001   14.8   2.8   25   96-120    21-45  (79)
 25 >1o5o_A Uracil phosphoribosylt  29.9      36  0.0011   14.6   4.7   45   96-145   152-196 (221)
 26 >2ews_A Pantothenate kinase; P  29.1      37  0.0011   14.6   6.5   43  100-142   122-164 (167)
 27 >1uf0_A Serine/threonine-prote  28.5      26 0.00076   15.6   1.4   44   78-121    20-74  (116)
 28 >2o20_A Catabolite control pro  28.4      38  0.0011   14.5   5.4   31   93-123     2-32  (130)
 29 >3gv0_A Transcriptional regula  28.0      39  0.0012   14.4   5.5   45   95-139     4-50  (132)
 30 >2dpw_A Hypothetical protein T  27.7      40  0.0012   14.4   2.9   34   84-120    26-59  (232)
 31 >2fep_A Catabolite control pro  27.7      40  0.0012   14.4   4.5   29   93-121     2-30  (133)
 32 >2hig_A 6-phospho-1-fructokina  27.5      40  0.0012   14.4   5.0   61   81-142   137-197 (249)
 33 >2jfz_A Glutamate racemase; ce  26.8      41  0.0012   14.3   4.7   77   50-142    15-92  (139)
 34 >2ehj_A Uracil phosphoribosylt  26.7      41  0.0012   14.3   4.2   50   88-146   135-184 (208)
 35 >1jye_A Lactose operon repress  26.6      41  0.0012   14.3   4.9   31   94-124     3-33  (130)
 36 >3lft_A Uncharacterized protei  25.2      44  0.0013   14.1   7.3   56   86-142    10-69  (148)
 37 >2h9u_A DNA/RNA-binding protei  24.4      45  0.0013   14.0   3.8   54   82-136     6-59  (102)
 38 >1hv9_A UDP-N-acetylglucosamin  24.3      46  0.0013   14.0   3.2   34   83-119    26-59  (222)
 39 >3hf7_A Uncharacterized CBS-do  24.2      46  0.0014   14.0   3.0   27   95-121    22-48  (78)
 40 >3knz_A Putative sugar binding  24.1      46  0.0014   14.0   5.4   35   96-131     5-39  (149)
 41 >2wyh_A Alpha-mannosidase; hyd  23.6      47  0.0014   13.9   6.4   59   84-143    42-104 (119)
 42 >1yt8_A Thiosulfate sulfurtran  23.2      48  0.0014   13.9   4.1   52   74-134    35-86  (112)
 43 >2flq_A Nitric oxide synthase;  23.0      34   0.001   14.8   1.2   12  219-230    18-29  (68)
 44 >3hcn_A Ferrochelatase, mitoch  22.9      48  0.0014   13.8   3.3   79   46-138    51-135 (143)
 45 >2nyc_A Nuclear protein SNF4;   22.9      49  0.0014   13.8   3.5   24   95-118    27-50  (70)
 46 >1jqn_A Pepcase, PEPC, phospho  22.4      45  0.0013   14.1   1.7   32  218-249   383-414 (420)
 47 >1lvw_A Glucose-1-phosphate th  22.1      50  0.0015   13.7   2.9   34   84-120    28-61  (263)
 48 >3brq_A HTH-type transcription  22.0      51  0.0015   13.7   5.1   30   94-123     4-33  (133)
 49 >3dbi_A Sugar-binding transcri  22.0      51  0.0015   13.7   5.1   30   94-123     4-33  (133)
 50 >2e3d_A UTP--glucose-1-phospha  21.8      51  0.0015   13.7   3.4   34   84-120    33-66  (302)
 51 >2qx5_A Nucleoporin NIC96; mRN  21.7      43  0.0013   14.2   1.4   33   28-60     14-46  (61)
 52 >2fn9_A Ribose ABC transporter  21.5      52  0.0015   13.7   3.3   31   93-123    10-40  (140)
 53 >3b6i_A Flavoprotein WRBA; fla  21.5      52  0.0015   13.7   4.0   27  228-254   171-197 (198)
 54 >1brt_A Bromoperoxidase A2; ha  21.5      52  0.0015   13.7   4.4   63   48-121    40-103 (277)
 55 >1hkh_A Gamma lactamase; hydro  21.3      52  0.0015   13.6   4.0   66   46-122    38-104 (279)
 56 >1byk_A Protein (trehalose ope  21.1      53  0.0016   13.6   3.6   45   95-139     4-51  (125)
 57 >3gaa_A Uncharacterized protei  20.6      54  0.0016   13.5   2.6   35   83-117    94-128 (252)
 58 >2yvy_A MGTE, Mg2+ transporter  20.4      55  0.0016   13.5   3.5   24   95-118    14-37  (75)
 59 >3fbt_A Chorismate mutase and   20.4      55  0.0016   13.5   3.2   21   97-117    16-36  (117)

No 1  
>>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} (A:)
Probab=100.00  E-value=0  Score=459.02  Aligned_cols=237  Identities=25%  Similarity=0.305  Sum_probs=204.4

Q ss_pred             CCCCCCHHHCCHHHHHH-CCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf             98664046669798973-104-9889993200124797465226789999999999983566773999140232678011
Q gi|254780633|r    1 MNPLIIFTDNSLPLCAD-ARK-DWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEH   78 (267)
Q Consensus         1 m~~~~~~~~lT~~e~~~-~~~-~~vvilPvGs~EqHGpHlPlgtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h   78 (267)
                      |+.+++|++|||+|+++ .++ ++++|||+|||||||||||+|||+++++++|+++|+++    +++|+|++|||+|++|
T Consensus         1 M~~~~~l~~lt~~E~~~~l~~~~~v~ilPvGs~EqHGpHLPlgtD~~~a~~ia~~ia~~~----~~lv~P~i~yG~s~~h   76 (260)
T 1v7z_A            1 MSKSVFVGELTWKEYEARVAAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKRVAERI----GALVMPGLQYGYKSQQ   76 (260)
T ss_dssp             --CCCBGGGSCHHHHHHHHHTSCCCEEEEECCBCCCCSSBCTTHHHHHHHHHHHHHHHHH----TCEECCCBCCCBCCCH
T ss_pred             CCCCEEHHHCCHHHHHHHHHCCCCEEEEEEECEECCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCC
T ss_conf             985566785798999999827997899825574046887514589999999999999877----9917465255767434


Q ss_pred             CC-----CCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH------CCEEEEEECCCCC
Q ss_conf             36-----887333099999999999999999749988999739878678999999998635------5839998247654
Q gi|254780633|r   79 MY-----VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR------FSMLVVSTSWSRF  147 (267)
Q Consensus        79 ~~-----fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~------~~~~~~~~~~~~~  147 (267)
                      +.     |||||+++++||.++|.||++||+++||||||||||||||.+++..+++++.++      .+..++..+||..
T Consensus        77 ~~~~~~~fPGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivNgHgGN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (260)
T 1v7z_A           77 KSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYWDF  156 (260)
T ss_dssp             HHHSCTTSSSCBCBCHHHHHHHHHHHHHHHHHHTCCEEEEEECSGGGHHHHHHHHHHHHHHHHHTTCCCCEEEEEEGGGG
T ss_pred             CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             57655677864760738899999999999998088659998227776378999999999998653377516999861112


Q ss_pred             CCHHH-H---C-CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf             56564-1---3-66556678868779999999978132683324667644320001340001377633202288809881
Q gi|254780633|r  148 TIPQG-I---I-SFPETEIGIHGGEIETSMMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKG  222 (267)
Q Consensus       148 ~~~~~-~---~-~~~~~~~g~HAge~ETS~~lal~PelV~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G  222 (267)
                      ..... .   . .......++|||+.|||+|||++|++|+++++.+..+......           ...+|..++++++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~HAg~~ETS~~l~l~PelV~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~G  225 (260)
T 1v7z_A          157 VKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLVDLDRVVDHPPATFPPY-----------DVFPVDPARTPAPG  225 (260)
T ss_dssp             CCCHHHHHHHCTTCCCCSTTCSSSHHHHHHHHHHCGGGBCGGGCCCCCCCCCCSS-----------EEESCCGGGSCTTS
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCHHHHCCCCCCCCCCC-----------CCCCCCHHHCCCCC
T ss_conf             3561667664224545668877778999999986967427233111587668832-----------23346675419998


Q ss_pred             CEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             041443079999999999999999999999
Q gi|254780633|r  223 VVGNAMDATVKKGEGLLSYFANCFIQLLND  252 (267)
Q Consensus       223 v~GdP~~At~E~G~~~~~~~v~~l~~~i~e  252 (267)
                      ++|||+.||+|+|+++++.++++++++|++
T Consensus       226 v~Gdp~~As~e~G~~~~~~~~~~l~~~i~~  255 (260)
T 1v7z_A          226 TLSSAKTASREKGELILEVCVQGIADAIRE  255 (260)
T ss_dssp             CSSCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             671715323999999999999999999983


No 2  
>>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} (A:1-152,A:296-319)
Probab=90.19  E-value=1.4  Score=23.72  Aligned_cols=71  Identities=8%  Similarity=0.152  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             6789999999999983566773999140232678011368-873330999999999999999997499889997398786
Q gi|254780633|r   42 TDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        42 tD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      -|.++--.+...+.+..+.+.-.+|+|-+|  |+-.+..| +|-.+++..++       ++-|...|+.+++.++-|-.+
T Consensus        68 nd~lmeLlll~dAlr~~gA~rItlViPYl~--YsRQDR~~~~G~e~isak~v-------A~ll~~~Gvd~vitvD~H~~~  138 (176)
T 3dah_A           68 NDNLMELMIMVDALKRASAGRITAAIPYFG--YARQDRRPRSARVAISAKVV-------ANMLEIAGVERIITMDLHADQ  138 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTTBSEEEEEESSCT--TTTCCSCCTTCCCCCHHHHH-------HHHHHHHTCCEEEEESCSCGG
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCCCCCCCCCHHHHHH-------HHHHCCCCCCEEEEECCCCHH
T ss_conf             067999999999998738976999963673--03688776788667379999-------975431589879998179768


Q ss_pred             H
Q ss_conf             7
Q gi|254780633|r  121 S  121 (267)
Q Consensus       121 ~  121 (267)
                      .
T Consensus       139 i  139 (176)
T 3dah_A          139 I  139 (176)
T ss_dssp             G
T ss_pred             H
T ss_conf             8


No 3  
>>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A (A:1-147,A:293-326)
Probab=87.81  E-value=2  Score=22.66  Aligned_cols=68  Identities=10%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             78999999999998356677399914023267801136887333099999999999999999749988999739878
Q gi|254780633|r   43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG  119 (267)
Q Consensus        43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG  119 (267)
                      |.++--.+.-.+++..+.+.-.+|+|  ++||+-....|-..-+++..+       +++-|...|+.+++.++-|-.
T Consensus        65 d~lmELlllidAlr~~gA~~ItlViP--Yl~YaRQDR~~~~GE~isak~-------vA~lL~~~G~d~vitvD~Hs~  132 (181)
T 2h06_A           65 DNLMELLIMINACKIASASRVTAVIP--CFPYARQDKKDKSRAPISAKL-------VANMLSVAGADHIITMDLHAS  132 (181)
T ss_dssp             HHHHHHHHHHHHHHTTTBSEEEEEES--SCTTTTCCSCSSSSCCCHHHH-------HHHHHHHHTCCEEEEESCSSG
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECC--CCCCCCCCCCCCCCCCEEHHH-------HHHHHHHCCCCEEEEECCCHH
T ss_conf             67999999999987606654047414--331222464347886212999-------999998638872899806868


No 4  
>>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} (A:1-153,A:296-317)
Probab=87.75  E-value=2  Score=22.63  Aligned_cols=69  Identities=9%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             789999999999983566773999140232678011368873330999999999999999997499889997398786
Q gi|254780633|r   43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      |.++--.+.-.+++..+.+.-.+|+|-++|  +-.+..|-..-.++..+       +++-|...|+.+++.++-|-.+
T Consensus        71 d~lmELll~idAlr~~gA~rItlViPYl~Y--aRQDr~~~~ge~isak~-------vA~lL~~~Gvd~vitvD~Hs~~  139 (175)
T 1dku_A           71 EHIMELLIMVDALKRASAKTINIVIPYYGY--ARQDRKARSREPITAKL-------FANLLETAGATRVIALDLHAPQ  139 (175)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEESSCTT--TTCCSCSSTTCCCHHHH-------HHHHHHHHTCCEEEEESCSSGG
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCCCCHHHHH-------HHHHHHHCCCCEEEEECCCCHH
T ss_conf             549999988877763455347883364214--40232257888715788-------8656653288768996268588


No 5  
>>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} (A:1-142,A:271-284)
Probab=81.49  E-value=3.9  Score=20.84  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             26789999999999983566773999140232678011368-87333099999999999999999749988999739878
Q gi|254780633|r   41 NTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG  119 (267)
Q Consensus        41 gtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG  119 (267)
                      ..|.++.-.+...+++..+.+.-.+|+|-++|  |-....| || -.++..+        +..|...|+.+++.++-|-.
T Consensus        59 ~~d~l~eLlll~~alr~~ga~~i~lViPYl~Y--sRQDR~~~~g-e~isak~--------~a~lls~g~d~vitvDlHs~  127 (156)
T 1u9y_A           59 QNDAIVETILLCDALRDEGVKKITLVAPYLAY--ARQDKKFNPG-EAISIRA--------LAKIYSNIVDKLITINPHET  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCEEEEECSSCTT--CSCSSCSSTT-BCCHHHH--------HHHHHHHHCSEEEEESCSCG
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC--CCCCCHHCCH-HHHHHHH--------HHHHHHHCCCHHHCCCCCHH
T ss_conf             54237889999999998564663211222332--2146110220-2577899--------99999742560121076123


Q ss_pred             C
Q ss_conf             6
Q gi|254780633|r  120 N  120 (267)
Q Consensus       120 N  120 (267)
                      +
T Consensus       128 ~  128 (156)
T 1u9y_A          128 H  128 (156)
T ss_dssp             G
T ss_pred             E
T ss_conf             0


No 6  
>>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* (A:1-175,A:352-379)
Probab=69.39  E-value=8.1  Score=18.81  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCC-CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             789999999999983566773999140232678011368-873330999999999999999997499889997398786
Q gi|254780633|r   43 DTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYV-DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        43 D~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~f-pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      |.++--.+...+++..+.+.-.+|+|-++  |+-....| +|.++-         ..++.-|...|+.+++.++-|-.+
T Consensus        94 d~lmELlllidAlr~~gA~~ItlViPYl~--YaRQDr~~~~g~~~a---------~~va~~L~~~g~d~VitvD~Hs~~  161 (203)
T 2ji4_A           94 TTIMELLIMVYACKTSCAKSIIGVIPYFP--YSKQCKMRKRGSIVS---------KLLASMMCKAGLTHLITMDLHQKE  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEECSSCS--SCCC-------CCHH---------HHHHHHHHHTTCCEEEEESCSSGG
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCCCCCCCCCCHH---------HHHHHHHHHCCCCEEEEECCCCHH
T ss_conf             78999999999998737752589722456--432452002565058---------899877775288722254137355


No 7  
>>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* (A:1-130,A:200-276)
Probab=52.58  E-value=16  Score=16.91  Aligned_cols=90  Identities=13%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             HHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             98356677399914023267801136887333099999999999999999749988999739878678999999998635
Q gi|254780633|r   55 KSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR  134 (267)
Q Consensus        55 a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~  134 (267)
                      +..+.+...+++.-...+|.|..+...        .++.+...++..-+.+.+.++++++..--|-.-++..+++.-..+
T Consensus        47 ~~~La~g~~Vi~~d~pG~G~S~~~~~~--------~~~~~~a~~i~~~l~~l~~~~i~ivGhSmGG~iAl~lA~~~~p~r  118 (207)
T 2wj6_A           47 IQELDADFRVIVPNWRGHGLSPSEVPD--------FGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPER  118 (207)
T ss_dssp             HHHHTTTSCEEEECCTTCSSSCCCCCC--------CCHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEECCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCHHH
T ss_conf             999827998999828999999999999--------999999999999999728887699974377899999998738355


Q ss_pred             CCEEEEEECCCCCCCHHHH
Q ss_conf             5839998247654565641
Q gi|254780633|r  135 FSMLVVSTSWSRFTIPQGI  153 (267)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~  153 (267)
                      ....+.. +.....++..+
T Consensus       119 V~glVli-~~~~~~~~~~~  136 (207)
T 2wj6_A          119 APRGIIM-DWLMWGSPMQM  136 (207)
T ss_dssp             SCCEEEE-SCCCSCCHHHH
T ss_pred             EEEEEEE-CCCCCCCCHHH
T ss_conf             4179998-77767671336


No 8  
>>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DNA binding protein; 1.70A {Thermus thermophilus HB8} (A:)
Probab=51.37  E-value=17  Score=16.79  Aligned_cols=50  Identities=24%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEE
Q ss_conf             0999999999999999997499889997398786789999999986355839
Q gi|254780633|r   87 LTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSML  138 (267)
Q Consensus        87 l~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~  138 (267)
                      ++.+--...|.+.+......|.+.+.||-|.|.+  .|+.+.+++-.+++..
T Consensus        12 ~~~~eA~~~l~~~l~~a~~~~~~~v~IIhGkG~g--vLk~~v~~~L~~~~~V   61 (83)
T 2zqe_A           12 LTVAEALLEVDQALEEARALGLSTLRLLHGKGTG--ALRQAIREALRRDKRV   61 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTS--HHHHHHHHHHHHCTTE
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHHCCCCC
T ss_conf             9899999999999999998698289998588868--9999999999659977


No 9  
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=47.79  E-value=19  Score=16.43  Aligned_cols=32  Identities=16%  Similarity=0.047  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             99999999999974998899973987867899
Q gi|254780633|r   93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPLV  124 (267)
Q Consensus        93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l  124 (267)
                      ..-...+++.|...|+|+|.+++++..+....
T Consensus         3 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~   34 (133)
T 2rgy_A            3 RRGGELAAATLIEHGHRKLAVISGPFTASDNV   34 (133)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESCTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             21100024567653001100024675544311


No 10 
>>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} (A:)
Probab=44.93  E-value=21  Score=16.16  Aligned_cols=29  Identities=3%  Similarity=0.090  Sum_probs=20.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43079999999999999999999999995
Q gi|254780633|r  227 AMDATVKKGEGLLSYFANCFIQLLNDINS  255 (267)
Q Consensus       227 P~~At~E~G~~~~~~~v~~l~~~i~e~~~  255 (267)
                      ......+...+-....++++++.++.++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~a~~~~~l~~  196 (199)
T 2zki_A          168 SKEELDEMERKIARFQGKRITEVAKAIKC  196 (199)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88999999999999999999999999856


No 11 
>>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* (A:1-211)
Probab=43.66  E-value=22  Score=16.03  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=24.5

Q ss_pred             EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             330999999999999999997499889997398786
Q gi|254780633|r   85 KTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        85 isl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      +.+...++   |.-+++.|.++|+++|+++.||..+
T Consensus        26 l~i~gkpi---i~~~i~~l~~~gi~~iviv~g~~~~   58 (211)
T 2ggo_A           26 VPILSKPL---IEYQIEYLRKCGIRDITVIVSSKNK   58 (211)
T ss_dssp             CEETTEEH---HHHHHHHHHHTTCCEEEEEECGGGH
T ss_pred             CEECCEEH---HHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf             18998469---9999999998799889999698739


No 12 
>>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} (A:)
Probab=40.00  E-value=25  Score=15.67  Aligned_cols=44  Identities=5%  Similarity=-0.064  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf             9999999997499889997398786789999999986355839998247
Q gi|254780633|r   96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSW  144 (267)
Q Consensus        96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~  144 (267)
                      +...++.|.++|.++|++++-|+...     +.+.+...+...++.+++
T Consensus       139 ~~~a~~~Lk~~Ga~~I~~~~~h~~~~-----a~~~i~~~~~~~~i~t~t  182 (208)
T 1v9s_A          139 ASLALSLLKERGATGVKLXAILAAPE-----GLERIAKDHPDTEVVVAA  182 (208)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEEEECHH-----HHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEECHH-----HHHHHHHHCCCCEEEEEE
T ss_conf             99999999865998469999985478-----999999878798899998


No 13 
>>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} (A:)
Probab=38.55  E-value=26  Score=15.53  Aligned_cols=45  Identities=11%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             99999999974998899973987867899999999863558399982476
Q gi|254780633|r   96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWS  145 (267)
Q Consensus        96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~  145 (267)
                      +...++.|.++|.++|++++.|+..     .+.+++...+...+++++.-
T Consensus       149 ~~~a~~~L~~~Ga~~I~~~~~~~~~-----~~~~~i~~~~~~~ii~T~ti  193 (216)
T 1xtt_A          149 MLKVLEEVVKANPKRIYIVSIISSE-----YGVNKILSKYPFIYLFTVAI  193 (216)
T ss_dssp             HHHHHHHHGGGCCSEEEEECSEEEH-----HHHHHHHHHCTTSEEEESEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEECH-----HHHHHHHHHCCCCEEEEEEE
T ss_conf             9999999851599769999998659-----99999998794988999996


No 14 
>>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} (A:)
Probab=38.54  E-value=23  Score=15.92  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=34.9

Q ss_pred             CCCEECCH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf             87333099-999999999999999749988999739878678
Q gi|254780633|r   82 DGTKTLTY-AEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP  122 (267)
Q Consensus        82 pGTisl~~-~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~  122 (267)
                      -||||++. .+..++..+|.+.--..|-+.+.|+..+++|..
T Consensus        40 ~GtVSv~~~~s~~d~~~~la~kAd~~GA~yy~Iis~~~~~~~   81 (99)
T 2noc_A           40 IGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKI   81 (99)
T ss_dssp             EEEEECCSCCCHHHHHHHHHHHHHHTCCSEEECCSCCSSSSC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCE
T ss_conf             159998898996999999999999849988999961899958


No 15 
>>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} (A:)
Probab=37.68  E-value=27  Score=15.44  Aligned_cols=64  Identities=8%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             6522678999999999998356677399914023267801136887333099999999999999999749988999
Q gi|254780633|r   38 LPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVI  113 (267)
Q Consensus        38 lPlgtD~~~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivi  113 (267)
                      +|+|++.=...++++.++..-.......+-|            +.=+|--..+.+.+++.+..+.+...|..|++.
T Consensus        15 ~P~g~~~svs~~V~~~i~~i~~sGl~y~v~p------------mgT~IEGe~dev~~~vk~~~e~~~~~G~~RV~t   78 (109)
T 1yqh_A           15 VPQAKTKDVYSVVDKAIEVVQQSGVRYEVGA------------XETTLEGELDVLLDVVKRAQQACVDAGAEEVIT   78 (109)
T ss_dssp             EEECSSSCHHHHHHHHHHHHHHSCSEEEECS------------SCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCEEECC------------CCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8468998579999999999997499658669------------825797689999999999999999769986999


No 16 
>>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} (A:)
Probab=36.33  E-value=29  Score=15.31  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=37.6

Q ss_pred             EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf             330999999999999999997499889997398-78678999999998635583999824765
Q gi|254780633|r   85 KTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNSPLVSIVSTEARMRFSMLVVSTSWSR  146 (267)
Q Consensus        85 isl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~~~l~~a~~~l~~~~~~~~~~~~~~~  146 (267)
                      ++++.+++.++.+.+..-....|+||++|=--- -.-...+..+.+.+-..-+.-....-|-.
T Consensus        10 vsv~~e~~~nffR~~~kD~R~~GskK~vINvis~i~~~e~v~~aREAlLdNIDlG~eiy~WK~   72 (126)
T 2rbg_A           10 ISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKK   72 (126)
T ss_dssp             EECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECG
T ss_pred             EECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf             854666579999999999985588528999854686799999999998843454528998678


No 17 
>>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} (A:)
Probab=36.19  E-value=29  Score=15.30  Aligned_cols=49  Identities=16%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHH-----HHCCCCEEEEECCCC----CCHHHHHHHHHHHHHHCCE
Q ss_conf             999999999999999-----974998899973987----8678999999998635583
Q gi|254780633|r   89 YAEAIEHWLAIIDAI-----RKMGIRKIVILNAHG----GNSPLVSIVSTEARMRFSM  137 (267)
Q Consensus        89 ~~t~~~~l~di~~sl-----~~~Gf~~iviiNgHg----GN~~~l~~a~~~l~~~~~~  137 (267)
                      .+.-...|...+...     ...|.+.+.||.|.|    ++.+.++.+.+++-.+.+.
T Consensus        10 v~eA~~~l~~~l~~~~~~~~~~~~~~~v~IItG~G~hS~~g~~~lk~~V~~~L~~~~~   67 (82)
T 3fau_A           10 VDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF   67 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9999999999999999888876797069999797768999964089999999986897


No 18 
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=36.02  E-value=29  Score=15.28  Aligned_cols=29  Identities=7%  Similarity=-0.133  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             99999999997499889997398786789
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHGGNSPL  123 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~  123 (267)
                      -...+++-|.++|.|+|.+|++.-++...
T Consensus         4 ~~~~a~~~L~~~G~r~i~~i~~~~~~~~~   32 (134)
T 3g85_A            4 XGEKASLLFAKKRYKSAAAILTESLNDAX   32 (134)
T ss_dssp             HHHHHHHHHHHTTCCBCEEEECCCSSHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf             44556543310222222223566442177


No 19 
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241)
Probab=33.67  E-value=31  Score=15.04  Aligned_cols=31  Identities=13%  Similarity=0.073  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             9999999999974998899973987867899
Q gi|254780633|r   94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPLV  124 (267)
Q Consensus        94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l  124 (267)
                      .-..++++.|.+.|+|+|.+|++...+....
T Consensus         3 ~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~   33 (136)
T 2qu7_A            3 EAAYIATKRVLESTCKEVGLLLANPNISTTI   33 (136)
T ss_dssp             HHHHHHHHHHHTSSCCCEEEEECCTTSHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf             7777777777652256125894053103667


No 20 
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=33.33  E-value=32  Score=15.00  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHHHHHHHCCEE
Q ss_conf             99999999997499889997398786789999--999986355839
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHGGNSPLVSI--VSTEARMRFSML  138 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~--a~~~l~~~~~~~  138 (267)
                      -..++++-|.++|+|||.++.+=-.+....+.  ..++.-++++..
T Consensus         4 ~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~   49 (130)
T 3cs3_A            4 GATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP   49 (130)
T ss_dssp             HHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             0122332101222345433457866623343226899999984997


No 21 
>>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans} (A:118-249)
Probab=33.20  E-value=32  Score=14.99  Aligned_cols=54  Identities=11%  Similarity=-0.059  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf             999999999999997---499889997398786789999999986355839998247
Q gi|254780633|r   91 EAIEHWLAIIDAIRK---MGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSW  144 (267)
Q Consensus        91 t~~~~l~di~~sl~~---~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~  144 (267)
                      .+..+|.+-+++...   ..=+.-+++-+||...+.....++.++++.+...+...+
T Consensus         4 ~i~~~l~~ri~~~~~~~~~~~~~~vvlvaHGS~~~~~~~~~~~l~~~~~~~~v~~~~   60 (132)
T 2jh3_A            4 GMADAIAAQARDTLPEGTDPADVTLLLLAARPGNAALETHAQALRERGQFAGVEVVL   60 (132)
T ss_dssp             THHHHHHHHHHHHSCTTCCGGGCEEEEEESSTTCHHHHHHHHHHHHHCCSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             789999999999862157767549999815775420699999999846888658999


No 22 
>>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} (A:1-126)
Probab=32.13  E-value=33  Score=14.88  Aligned_cols=17  Identities=29%  Similarity=0.053  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999999999835667
Q gi|254780633|r   45 IIAAGLAERIKSILPPR   61 (267)
Q Consensus        45 ~~a~~ia~~~a~~~~~~   61 (267)
                      -.+..+++++++.++..
T Consensus        18 ~~g~~la~~l~~~l~~~   34 (126)
T 3eeq_A           18 EDAFSAGETIKEKLKSF   34 (126)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             73699999999876745


No 23 
>>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:49-259,A:360-538)
Probab=31.05  E-value=35  Score=14.77  Aligned_cols=17  Identities=18%  Similarity=0.247  Sum_probs=8.5

Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             99999999749988999
Q gi|254780633|r   97 LAIIDAIRKMGIRKIVI  113 (267)
Q Consensus        97 ~di~~sl~~~Gf~~ivi  113 (267)
                      ..+++.|...|.--|.+
T Consensus       132 ~~~vk~lveaGiagV~i  148 (390)
T 1dqu_A          132 MKLTKLFVERGAAGIHI  148 (390)
T ss_dssp             HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
T ss_conf             99999999758708874


No 24 
>>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP} (A:215-293)
Probab=31.04  E-value=35  Score=14.76  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             9999999997499889997398786
Q gi|254780633|r   96 WLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        96 l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      +.-+++.|.+.|++|.++|.|.+|-
T Consensus        21 ~~~~a~~l~~lg~~ra~Vv~G~~G~   45 (79)
T 1vqu_A           21 LTTVAQALDNLGKQKAIVLHGRERL   45 (79)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEETTTB
T ss_pred             HHHHHHHHHHCCCCHHEEECCCCCC
T ss_conf             5168999997497410211033543


No 25 
>>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} (A:)
Probab=29.86  E-value=36  Score=14.64  Aligned_cols=45  Identities=9%  Similarity=0.144  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf             99999999974998899973987867899999999863558399982476
Q gi|254780633|r   96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWS  145 (267)
Q Consensus        96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~  145 (267)
                      +...++.|..+|.++|+++.-|+-.     ...+++...+...++.++.-
T Consensus       152 ~~~a~~~Lk~~Ga~~I~~~~~h~~~-----~g~~~i~~~~~~~~i~T~si  196 (221)
T 1o5o_A          152 SIKAIEILKENGAKKITLVALIAAP-----EGVEAVEKKYEDVKIYVAAL  196 (221)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSEECH-----HHHHHHHHHCTTCEEEESEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEECH-----HHHHHHHHHCCCCEEEEEEE
T ss_conf             9999999986699838999987468-----99999998788988999985


No 26 
>>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:108-274)
Probab=29.11  E-value=37  Score=14.56  Aligned_cols=43  Identities=16%  Similarity=0.114  Sum_probs=31.5

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             9999974998899973987867899999999863558399982
Q gi|254780633|r  100 IDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVST  142 (267)
Q Consensus       100 ~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~  142 (267)
                      .+.+...+.++|+++.|-..|...++...+++..+.+...++.
T Consensus       122 ~~a~~~~~i~~iv~~GG~va~N~~lr~~l~~~~~~~~~~~~fp  164 (167)
T 2ews_A          122 ITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYV  164 (167)
T ss_dssp             HHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHCCCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9975423989399989626504999999999997689989968


No 27 
>>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} (A:)
Probab=28.47  E-value=26  Score=15.59  Aligned_cols=44  Identities=11%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             HCCCCC-CEECCH---HHHHHHHHHHHHHH-----HHCCCCEEEEECC-C-CCCH
Q ss_conf             136887-333099---99999999999999-----9749988999739-8-7867
Q gi|254780633|r   78 HMYVDG-TKTLTY---AEAIEHWLAIIDAI-----RKMGIRKIVILNA-H-GGNS  121 (267)
Q Consensus        78 h~~fpG-Tisl~~---~t~~~~l~di~~sl-----~~~Gf~~iviiNg-H-gGN~  121 (267)
                      ...|+| ++-+++   .+|..+|.++.+.|     ...|.|+|+=.+| | -.+.
T Consensus        20 D~~~~g~~~~i~~~~~~t~d~lL~~lt~~l~~~~~l~~~Vr~lyT~~G~~~V~~l   74 (116)
T 1uf0_A           20 DRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSL   74 (116)
T ss_dssp             CSSCCCEEEEECTTTCCSHHHHHHHHHHHSCCSSSCSSCCCEEEESSSSCEECST
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCH
T ss_conf             9899989999896424899999999999871147898772499869998085899


No 28 
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=28.42  E-value=38  Score=14.48  Aligned_cols=31  Identities=10%  Similarity=-0.064  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             9999999999997499889997398786789
Q gi|254780633|r   93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPL  123 (267)
Q Consensus        93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~  123 (267)
                      .+-....++-|.+.|.|+|.++++...+...
T Consensus         2 ~~a~~~a~~~L~~~G~r~I~~i~~~~~~~~~   32 (130)
T 2o20_A            2 HLAAYQSTKKLIDSGNKKIAYIMGSLKDVEN   32 (130)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEECSCTTSHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             9999999999987188764433478778219


No 29 
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=28.01  E-value=39  Score=14.44  Aligned_cols=45  Identities=9%  Similarity=0.069  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--HHHHHHCCEEE
Q ss_conf             9999999999749988999739878678999999--99863558399
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVS--TEARMRFSMLV  139 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~--~~l~~~~~~~~  139 (267)
                      -...+++-|.++|+|+|.+|++.-.+....+...  .+...+.+...
T Consensus         4 ~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~   50 (132)
T 3gv0_A            4 YAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTE   50 (132)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             67777777631253403687177433225666788899999863110


No 30 
>>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.90A {Thermus thermophilus HB8} (A:)
Probab=27.72  E-value=40  Score=14.40  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             3330999999999999999997499889997398786
Q gi|254780633|r   84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      -+.+...+++..   +++.|..+|+++++++++|.+.
T Consensus        26 Ll~i~gkpli~~---~i~~l~~~~i~~iivv~~~~~~   59 (232)
T 2dpw_A           26 LVPYRGRPXVEW---VLEALYAAGLSPVYVGENPGLV   59 (232)
T ss_dssp             GSEETTEETHHH---HHHHHHHTTCEEEEESCCSSCS
T ss_pred             EEEECCEEHHHH---HHHHHHHCCCCEEEEEECCCCC
T ss_conf             169999849999---9999987899889999078433


No 31 
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249)
Probab=27.65  E-value=40  Score=14.40  Aligned_cols=29  Identities=7%  Similarity=0.092  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             99999999999974998899973987867
Q gi|254780633|r   93 IEHWLAIIDAIRKMGIRKIVILNAHGGNS  121 (267)
Q Consensus        93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~  121 (267)
                      ..-..++++-|.+.|.|||.++++.-.+.
T Consensus         2 ~~a~~~a~~~L~~~G~r~i~~i~~~~~~~   30 (133)
T 2fep_A            2 EQAIYDAVKLLVDKGHTDIAFVSGPMAEP   30 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEESCTTSH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             87899999999862994367860576655


No 32 
>>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* (A:28-234,A:388-429)
Probab=27.55  E-value=40  Score=14.38  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=37.5

Q ss_pred             CCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             88733309999999999999999974998899973987867899999999863558399982
Q gi|254780633|r   81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVST  142 (267)
Q Consensus        81 fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~  142 (267)
                      .+||+=-+..+ ..-...+++.|.++|+..++++.|-|.+..+...+..-.+...+..++.+
T Consensus       137 ~GGs~LGssR~-~~~~~~i~~~l~~~~I~~LviIGGdgS~~~a~~L~e~~~~~~~~i~VvgI  197 (249)
T 2hig_A          137 YGGTILGSSRG-PQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGV  197 (249)
T ss_dssp             SSSCSSCCCCS-CCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEECCCCC-CCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             79717206899-74599999999985998899964707899999999998861898328833


No 33 
>>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255)
Probab=26.85  E-value=41  Score=14.30  Aligned_cols=77  Identities=13%  Similarity=0.061  Sum_probs=52.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCC-CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             999999835667739991402326780113688-7333099999999999999999749988999739878678999999
Q gi|254780633|r   50 LAERIKSILPPRLPVTCMPVEPIGYSIEHMYVD-GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVS  128 (267)
Q Consensus        50 ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fp-GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~  128 (267)
                      +.+++.+.+++..=+.++=      +   .+|| |  +-+.+.+..+..+++..|.++|.+-+|+-    -|. +-..+.
T Consensus        15 Vlk~i~k~lP~~~~IY~aD------~---a~~PYG--~Ks~eeI~~~~~~iv~~L~~~~vk~IVIA----CNT-ASa~aL   78 (139)
T 2jfz_A           15 VLKSLLKARLFDEIIYYGD------S---ARVPYG--TKDPTTIKQFGLEALDFFKPHEIELLIVA----CNT-ASALAL   78 (139)
T ss_dssp             HHHHHHHTTCCSEEEEEEC------T---TTCCCT--TSCHHHHHHHHHHHHHHHGGGCCSCEEEC----CHH-HHHHTH
T ss_pred             HHHHHHHHCCCCCEEEEEC------C---CCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEE----CCH-HHHHHH
T ss_conf             9999999789999899953------7---889989--99999999999999998763365678870----546-877426


Q ss_pred             HHHHHHCCEEEEEE
Q ss_conf             99863558399982
Q gi|254780633|r  129 TEARMRFSMLVVST  142 (267)
Q Consensus       129 ~~l~~~~~~~~~~~  142 (267)
                      +.++++++..++-+
T Consensus        79 ~~LR~~~~iPVIGv   92 (139)
T 2jfz_A           79 EEMQKYSKIPIVGV   92 (139)
T ss_dssp             HHHHHHCSSCEECS
T ss_pred             HHHHHCCCEEEEEC
T ss_conf             88864486179966


No 34 
>>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} (A:)
Probab=26.74  E-value=41  Score=14.29  Aligned_cols=50  Identities=20%  Similarity=0.124  Sum_probs=33.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf             99999999999999999749988999739878678999999998635583999824765
Q gi|254780633|r   88 TYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSR  146 (267)
Q Consensus        88 ~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~~~~~  146 (267)
                      +..|+.    ..++.|.++|.++|+++.-|+-..     ..+.+...+...+++++.-.
T Consensus       135 TG~T~~----~a~~~L~~~Ga~~I~~~~~h~~~~-----g~~~i~~~~~~~~i~T~si~  184 (208)
T 2ehj_A          135 TGGSVI----ATIDLLKKAGCSSIKVLVLVAAPE-----GIAALEKAHPDVELYTASID  184 (208)
T ss_dssp             SCHHHH----HHHHHHHHTTCCEEEEEEEEECHH-----HHHHHHHHCTTSEEEESCBC
T ss_pred             CCHHHH----HHHHHHHHCCCCCEEEEEEEECHH-----HHHHHHHHCCCCEEEEEEEC
T ss_conf             665699----999999847998579999961579-----99999987929789999857


No 35 
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=26.55  E-value=41  Score=14.27  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             9999999999974998899973987867899
Q gi|254780633|r   94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPLV  124 (267)
Q Consensus        94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l  124 (267)
                      .-....++.|.++|+|+|.+|.+.-.+...-
T Consensus         3 ~~~~~a~~~l~~~G~r~I~~i~~~~~~~~~~   33 (130)
T 1jye_A            3 DGTRLGVEHLVALGHQQIALLAGPLSSVSAR   33 (130)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECCTTSHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf             8999999999975996699994774322899


No 36 
>>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:1-117,A:236-266)
Probab=25.22  E-value=44  Score=14.12  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             ECCHHHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             309999999999999999974998----899973987867899999999863558399982
Q gi|254780633|r   86 TLTYAEAIEHWLAIIDAIRKMGIR----KIVILNAHGGNSPLVSIVSTEARMRFSMLVVST  142 (267)
Q Consensus        86 sl~~~t~~~~l~di~~sl~~~Gf~----~iviiNgHgGN~~~l~~a~~~l~~~~~~~~~~~  142 (267)
                      +.+...+.+.+.-+.+.|...|+.    ++.+.|.. |+...+...++++.......++..
T Consensus        10 ~~~~~~l~~~~~gf~~~L~~~G~~e~ni~i~~~~A~-~D~~~l~~ia~~l~~~~~DlIva~   69 (148)
T 3lft_A           10 FVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFXNSE-GDQSKVATXSKQLVANGNDLVVGI   69 (148)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             877738999999999999975998760799996798-899999999999974698679844


No 37 
>>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} (A:)
Probab=24.36  E-value=45  Score=14.01  Aligned_cols=54  Identities=20%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             CCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             8733309999999999999999974998899973987867899999999863558
Q gi|254780633|r   82 DGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFS  136 (267)
Q Consensus        82 pGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~~~  136 (267)
                      +..|.+.......++...+..|.+.|++.++|- |-|.++.=.-.++..++.+++
T Consensus         6 ~n~I~v~~k~~~~yv~~a~~~l~~~~~~~V~i~-g~G~AI~kAV~vaEilkrr~~   59 (102)
T 2h9u_A            6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVK-ARGRNINRAVDAVEIVRKRFA   59 (102)
T ss_dssp             CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEE-EETTHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE-EECCCHHHHHHHHHHHHHHCC
T ss_conf             978999797789999999999861898679999-855305568889999998635


No 38 
>>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} (A:1-222)
Probab=24.28  E-value=46  Score=14.00  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=27.0

Q ss_pred             CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             7333099999999999999999749988999739878
Q gi|254780633|r   83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG  119 (267)
Q Consensus        83 GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgG  119 (267)
                      .-+.+...+++..   +++.|.++|+.+++++.++..
T Consensus        26 ~li~i~gkpli~~---~i~~l~~~g~~~ivv~~~~~~   59 (222)
T 1hv9_A           26 VLHTLAGKAMVQH---VIDAANELGAAHVHLVYGHGG   59 (222)
T ss_dssp             GGSEETTEEHHHH---HHHHHHHHTCSCEEEEECSCH
T ss_pred             HHEEECCEEHHHH---HHHHHHHCCCCEEEEECCCCH
T ss_conf             7518997239999---999999779985999938998


No 39 
>>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} (A:1-78)
Probab=24.25  E-value=46  Score=14.00  Aligned_cols=27  Identities=15%  Similarity=0.358  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             999999999974998899973987867
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHGGNS  121 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHgGN~  121 (267)
                      -+.++...+..+||.|+.++++..+|.
T Consensus        22 ~~~e~~~~~~~~~~sr~PV~~~~~d~i   48 (78)
T 3hf7_A           22 DWKSIVRQLTHSPHGRIVLYRDSLDDA   48 (78)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSSGGGE
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             989999999855765103654555454


No 40 
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182)
Probab=24.12  E-value=46  Score=13.98  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             999999999749988999739878678999999998
Q gi|254780633|r   96 WLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEA  131 (267)
Q Consensus        96 l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l  131 (267)
                      +..+++.+...+.+||+|+ |.|++..+...+...+
T Consensus         5 i~~~v~~l~~~~a~~I~~~-G~G~S~~~a~~~~~~l   39 (149)
T 3knz_A            5 LWRAAQALTERGVTRIILT-GSGTSYHGALTARTFX   39 (149)
T ss_dssp             HHHHHHHHHHTTCCEEEEE-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEE-EECHHHHHHHHHHHHH
T ss_conf             9999999986799989999-9507999999999999


No 41 
>>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:1-40,A:218-296)
Probab=23.61  E-value=47  Score=13.92  Aligned_cols=59  Identities=17%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             CEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH---HHHHHHHHHHHHCCEEEEEEC
Q ss_conf             3330999999999999999997499-88999739878678---999999998635583999824
Q gi|254780633|r   84 TKTLTYAEAIEHWLAIIDAIRKMGI-RKIVILNAHGGNSP---LVSIVSTEARMRFSMLVVSTS  143 (267)
Q Consensus        84 Tisl~~~t~~~~l~di~~sl~~~Gf-~~iviiNgHgGN~~---~l~~a~~~l~~~~~~~~~~~~  143 (267)
                      -|....+.+...+..++..+.+... .+++|.||+. +.+   -+..+.+++++.++..-++.+
T Consensus        42 eLP~d~e~ak~~ld~~l~kLe~~A~T~nILLPnG~D-Q~PIq~nLpE~I~~~Ne~ypd~efviS  104 (119)
T 2wyh_A           42 EIPTTEAEARLFWDKKLADAERFASTKHLLMMNGCD-HQPVQLDVTKAIALANQLYPDYEFVHS  104 (119)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHCSSSEEEEEECCB-TCCCCTTHHHHHHHHHHHCTTEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CCCCCHHHHHHHHHHHHCCCCCCEEEC
T ss_conf             588528899999998887787514568468736879-997554299999988753898618975


No 42 
>>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} (A:1-112)
Probab=23.19  E-value=48  Score=13.87  Aligned_cols=52  Identities=8%  Similarity=-0.043  Sum_probs=26.7

Q ss_pred             CCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             7801136887333099999999999999999749988999739878678999999998635
Q gi|254780633|r   74 YSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMR  134 (267)
Q Consensus        74 ~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~l~~a~~~l~~~  134 (267)
                      +...|  .||.+.++.+.+...+.++    ... -.+.|++.+.+|+..  ..+++.++..
T Consensus        35 ~~~~h--ipgA~~i~~~~~~~~~~~~----~~~-~~~~iv~~c~~g~~a--~~~~~~L~~~   86 (112)
T 1yt8_A           35 FAQAH--PLFAANLPLSRLELEIHAR----VPR-RDTPITVYDDGEGLA--PVAAQRLHDL   86 (112)
T ss_dssp             HTTSB--CTTCEECCGGGHHHHHHHH----SCC-TTSCEEEECSSSSHH--HHHHHHHHHT
T ss_pred             HHCCC--CCCCEECCHHHHHHHHHHH----CCC-CCCEEEEEECCCCHH--HHHHHHHHHC
T ss_conf             84488--9998877889999999984----799-998699997998889--9999999975


No 43 
>>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus} (A:127-194)
Probab=22.97  E-value=34  Score=14.79  Aligned_cols=12  Identities=17%  Similarity=0.606  Sum_probs=8.9

Q ss_pred             CCCCCEECCCCC
Q ss_conf             988104144307
Q gi|254780633|r  219 NPKGVVGNAMDA  230 (267)
Q Consensus       219 s~~Gv~GdP~~A  230 (267)
                      .++|++|||+..
T Consensus        18 ~~dGviGDP~~v   29 (68)
T 2flq_A           18 TEEGIIGDSSSL   29 (68)
T ss_dssp             CSSSEEECGGGH
T ss_pred             CCCCCCCCCHHH
T ss_conf             889867783166


No 44 
>>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A* (A:165-307)
Probab=22.94  E-value=48  Score=13.84  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCC
Q ss_conf             9999999999835667739991402326780113688733309999999999999999974998899973-----98786
Q gi|254780633|r   46 IAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILN-----AHGGN  120 (267)
Q Consensus        46 ~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiN-----gHgGN  120 (267)
                      -.+..++.++++++-.....++         ....+.+.=++.|+|     .|.++.|.+.|+|+++++-     .|-.-
T Consensus        51 q~~~t~~~i~~~l~~~~~~~~~---------~QS~~g~~~Wl~P~~-----~~~l~~l~~~G~k~v~v~p~gF~sD~lET  116 (143)
T 3hcn_A           51 EVSATVQKVMERLEYCNPYRLV---------WQSKVGPMPWLGPQT-----DESIKGLCERGRKNILLVPIAFTSDHIET  116 (143)
T ss_dssp             HHHHHHHHHHHHTTTCSCEEEE---------EECCSCSSCBSSSBH-----HHHHHHHHHTTCCEEEEECTTCCSCCCCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHE---------EECCCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEECCCCCCCCHHH
T ss_conf             8999999999873454022210---------114779866668738-----99999999749972999797313563467


Q ss_pred             HHHHHHHHHH-HHHHCCEE
Q ss_conf             7899999999-86355839
Q gi|254780633|r  121 SPLVSIVSTE-ARMRFSML  138 (267)
Q Consensus       121 ~~~l~~a~~~-l~~~~~~~  138 (267)
                      .--++.-+++ +.++.+..
T Consensus       117 lyeidie~~e~~~~~~G~~  135 (143)
T 3hcn_A          117 LYELDIEYSQVLAKECGVE  135 (143)
T ss_dssp             HHHHCHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9987899999999976996


No 45 
>>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} (A:1-15,A:90-144)
Probab=22.87  E-value=49  Score=13.83  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             999999999974998899973987
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHG  118 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHg  118 (267)
                      -|..+++-+++.|.+|+++|+..+
T Consensus        27 tL~tVierlv~agVhRLVVVd~s~   50 (70)
T 2nyc_A           27 KLSTIMDNIRKARVHRFFVVDDVG   50 (70)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             CHHHHHHHHHHCCEEEEEEECCCC
T ss_conf             799999988862756999991799


No 46 
>>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647)
Probab=22.43  E-value=45  Score=14.06  Aligned_cols=32  Identities=9%  Similarity=0.083  Sum_probs=22.2

Q ss_pred             CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             09881041443079999999999999999999
Q gi|254780633|r  218 LNPKGVVGNAMDATVKKGEGLLSYFANCFIQL  249 (267)
Q Consensus       218 ~s~~Gv~GdP~~At~E~G~~~~~~~v~~l~~~  249 (267)
                      +|..|-+..-+.++++...+-++.++..+.+.
T Consensus       383 ~TeQGevi~~ky~~~~~A~r~le~~~~a~l~~  414 (420)
T 1jqn_A          383 VTEQGEMIRFKYGLPEITVSSLSLYTGAILEA  414 (420)
T ss_dssp             EEECGGGHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             62013789970499999999999999999987


No 47 
>>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} (A:1-263)
Probab=22.11  E-value=50  Score=13.73  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=25.6

Q ss_pred             CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             3330999999999999999997499889997398786
Q gi|254780633|r   84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      -+.+...+++.+   +++.|.+.|+++|+++.||...
T Consensus        28 ll~i~Gkpli~~---~l~~l~~~gi~~ivvv~~~~~~   61 (263)
T 1lvw_A           28 LLPIYDKPMIYY---PLSVLMLAGIRDILIISTPRDL   61 (263)
T ss_dssp             GSEETTEETTHH---HHHHHHHTTCCEEEEEECTTTH
T ss_pred             EEEECCEEHHHH---HHHHHHHCCCCEEEEEECCCCH
T ss_conf             126999889999---9999987799869999463449


No 48 
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=21.98  E-value=51  Score=13.72  Aligned_cols=30  Identities=10%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             999999999997499889997398786789
Q gi|254780633|r   94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPL  123 (267)
Q Consensus        94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~  123 (267)
                      .-...+++-|.+.|.|||.++++...+...
T Consensus         4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~   33 (133)
T 3brq_A            4 QTSFNAVAELINAGHQEIAFLTGSXDSPTS   33 (133)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECCCTTCHHH
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             211134455434036559999577556530


No 49 
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=21.98  E-value=51  Score=13.72  Aligned_cols=30  Identities=10%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             999999999997499889997398786789
Q gi|254780633|r   94 EHWLAIIDAIRKMGIRKIVILNAHGGNSPL  123 (267)
Q Consensus        94 ~~l~di~~sl~~~Gf~~iviiNgHgGN~~~  123 (267)
                      .-...+++-|.+.|.|||.++++...+...
T Consensus         4 ~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~   33 (133)
T 3dbi_A            4 QTSFNAVAELINAGHQEIAFLTGSXDSPTS   33 (133)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECCCTTCHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf             999999999998499859999789998669


No 50 
>>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} (A:)
Probab=21.80  E-value=51  Score=13.69  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             CEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             3330999999999999999997499889997398786
Q gi|254780633|r   84 TKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN  120 (267)
Q Consensus        84 Tisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgHgGN  120 (267)
                      -+.+...+++.+   ++..|.+.|+++++|+.++.+.
T Consensus        33 llpv~g~plI~~---~i~~l~~~gi~~i~vv~~~~~e   66 (302)
T 2e3d_A           33 MLPLVDKPLIQY---VVNECIAAGITEIVLVTHSSKN   66 (302)
T ss_dssp             GCEETTEEHHHH---HHHHHHHTTCCEEEEEECGGGH
T ss_pred             CCEECCEEHHHH---HHHHHHHCCCCEEEEEEECCHH
T ss_conf             308999989999---9999998699889999413214


No 51 
>>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:410-470)
Probab=21.66  E-value=43  Score=14.17  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             200124797465226789999999999983566
Q gi|254780633|r   28 LGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP   60 (267)
Q Consensus        28 vGs~EqHGpHlPlgtD~~~a~~ia~~~a~~~~~   60 (267)
                      -|.+||++|=+++..-.--...|++.+|+.+.+
T Consensus        14 pG~IE~~~~Li~l~d~~~fl~~I~~~aA~~ae~   46 (61)
T 2qx5_A           14 PGVIEERQPLLHVRDEKEFLHTITEQAARRADE   46 (61)
T ss_dssp             CCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             467865044112224499999999999999997


No 52 
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246)
Probab=21.54  E-value=52  Score=13.66  Aligned_cols=31  Identities=6%  Similarity=-0.211  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             9999999999997499889997398786789
Q gi|254780633|r   93 IEHWLAIIDAIRKMGIRKIVILNAHGGNSPL  123 (267)
Q Consensus        93 ~~~l~di~~sl~~~Gf~~iviiNgHgGN~~~  123 (267)
                      ..++..+.+.+...|.+||.+++|+.++...
T Consensus        10 ~~l~~~~~~~~~~~g~~~i~~i~g~~~~~~~   40 (140)
T 2fn9_A           10 EYFVKFLKEKYPDAKEIPYAELLGILSAQPT   40 (140)
T ss_dssp             HHHHHHHHHHCSSCSCEEEEEEECCTTCHHH
T ss_pred             HHHHHHHCCCCCCCCCCCEEEECCCCCCHHH
T ss_conf             9999972102345655514651388775057


No 53 
>>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* (A:)
Probab=21.52  E-value=52  Score=13.66  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=15.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             307999999999999999999999999
Q gi|254780633|r  228 MDATVKKGEGLLSYFANCFIQLLNDIN  254 (267)
Q Consensus       228 ~~At~E~G~~~~~~~v~~l~~~i~e~~  254 (267)
                      .....+...+..+...+++++.++.++
T Consensus       171 ~~~~~~~~~~~a~~~~~~la~~~~~l~  197 (198)
T 3b6i_A          171 SRQPSQEELSIARYQGEYVAGLAVKLN  197 (198)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             789499999999999999999999714


No 54 
>>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} (A:)
Probab=21.47  E-value=52  Score=13.65  Aligned_cols=63  Identities=10%  Similarity=0.066  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCH
Q ss_conf             9999999983566773999140232678011368873330999999999999999997499889997398-7867
Q gi|254780633|r   48 AGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNS  121 (267)
Q Consensus        48 ~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~  121 (267)
                      ..++..+++   +...++..=-.-+|.|....        ...+......|+...+.+.+..+.+++-|| +|-.
T Consensus        40 ~~~~~~L~~---~g~~v~~~D~~G~G~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~S~Gg~  103 (277)
T 1brt_A           40 ERQSAALLD---AGYRVITYDRRGFGQSSQPT--------TGYDYDTFAADLNTVLETLDLQDAVLVGFSTGTGE  103 (277)
T ss_dssp             HHHHHHHHH---TTCEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHH
T ss_pred             HHHHHHHHH---CCCEEEEECCCCCCCCCCCC--------CCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf             999999996---89989997179987765545--------42212220110345666506542223233332035


No 55 
>>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} (A:)
Probab=21.34  E-value=52  Score=13.64  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHH
Q ss_conf             999999999983566773999140232678011368873330999999999999999997499889997398-78678
Q gi|254780633|r   46 IAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH-GGNSP  122 (267)
Q Consensus        46 ~a~~ia~~~a~~~~~~~~~~v~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH-gGN~~  122 (267)
                      .-..++..+++   ....++..--.-+|.|....        ...+...+..|+..-+...+.++.+++-+| ||...
T Consensus        38 ~~~~~~~~L~~---~g~~v~~~D~~G~G~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vg~s~~G~~~  104 (279)
T 1hkh_A           38 SWERQTRELLA---QGYRVITYDRRGFGGSSKVN--------TGYDYDTFAADLHTVLETLDLRDVVLVGFSMGTGEL  104 (279)
T ss_dssp             GGHHHHHHHHH---TTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHHTCCSEEEEEETHHHHHH
T ss_pred             HHHHHHHHHHH---CCCEEEEEECCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             99999999997---89989998189999999999--------999999999999987886299977999964643554


No 56 
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=21.15  E-value=53  Score=13.61  Aligned_cols=45  Identities=9%  Similarity=0.008  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCC--H-HHHHHHHHHHHHHCCEEE
Q ss_conf             99999999997499889997398786--7-899999999863558399
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHGGN--S-PLVSIVSTEARMRFSMLV  139 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHgGN--~-~~l~~a~~~l~~~~~~~~  139 (267)
                      -..+.++-|.++|+|+|.++++--.+  . .--....++.-.+++...
T Consensus         4 a~~~a~~~l~~~G~r~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~   51 (125)
T 1byk_A            4 AIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP   51 (125)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999985114432357666765077777677999999739976


No 57 
>>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophilum, structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} (A:)
Probab=20.59  E-value=54  Score=13.54  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             73330999999999999999997499889997398
Q gi|254780633|r   83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH  117 (267)
Q Consensus        83 GTisl~~~t~~~~l~di~~sl~~~Gf~~iviiNgH  117 (267)
                      +...+.+.....+..++++.+.+.||++++++.|=
T Consensus        94 ~~~p~~~~~~~~~~~~i~~~~~~~gv~~vi~l~g~  128 (252)
T 3gaa_A           94 CEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGS  128 (252)
T ss_dssp             ESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             03689812799999999999997499769997032


No 58 
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278)
Probab=20.38  E-value=55  Score=13.51  Aligned_cols=24  Identities=4%  Similarity=0.171  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             999999999974998899973987
Q gi|254780633|r   95 HWLAIIDAIRKMGIRKIVILNAHG  118 (267)
Q Consensus        95 ~l~di~~sl~~~Gf~~iviiNgHg  118 (267)
                      -+.+.++-+.+++|+++.+++..|
T Consensus        14 ~i~~a~~~m~~~~~~~lpVvD~~g   37 (75)
T 2yvy_A           14 DQEEVARLMADYDFTVLPVVDEEG   37 (75)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             799999999974980898986899


No 59 
>>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} (A:120-236)
Probab=20.37  E-value=55  Score=13.51  Aligned_cols=21  Identities=10%  Similarity=0.235  Sum_probs=17.3

Q ss_pred             HHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999997499889997398
Q gi|254780633|r   97 LAIIDAIRKMGIRKIVILNAH  117 (267)
Q Consensus        97 ~di~~sl~~~Gf~~iviiNgH  117 (267)
                      ..++..|..+|+++|.|+|=.
T Consensus        16 ~ai~~~L~~~g~~~i~I~~R~   36 (117)
T 3fbt_A           16 RAVLQYLKDNFAKDIYVVTRN   36 (117)
T ss_dssp             HHHHHHHHHTTCSEEEEEESC
T ss_pred             HHHHHHHHHCCCCEEEEEECC
T ss_conf             223333441555269987400


Done!