RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase
[Candidatus Liberibacter asiaticus str. psy62]
(267 letters)
>gnl|CDD|151508 pfam11062, DUF2863, Protein of unknown function (DUF2863). This
bacterial family of proteins have no known function.
Length = 398
Score = 31.2 bits (71), Expect = 0.27
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 144 WSRFTIPQGIISFP---ETEIGIHGGEIETSMMLALAPHLVKMD 184
W+R++IP G I + + + LALAP L +D
Sbjct: 107 WTRYSIPSGPIPAAVLQALRVHLQAHVLADDARLALAPFLFSID 150
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 30.3 bits (69), Expect = 0.52
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Query: 45 IIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIR 104
I+AAG R+KS LP L G + +EH +IDA R
Sbjct: 5 ILAAGKGTRMKSDLPKVLHPLA------GKPM----------------LEH---VIDAAR 39
Query: 105 KMGIRKIVILNAHGGN 120
+G +KI ++ HG
Sbjct: 40 ALGPQKIHVVYGHGAE 55
>gnl|CDD|181068 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 29.9 bits (68), Expect = 0.78
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK---IVILNAHGGNSP 122
YV G + LTYAE A+ +GI K + I NSP
Sbjct: 24 YVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIW---APNSP 66
>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 29.6 bits (67), Expect = 0.78
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 134 RFSMLVVSTSWSRFTIPQG 152
RF + V W RFTIP G
Sbjct: 213 RFGIAVQREGWQRFTIPAG 231
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 28.6 bits (65), Expect = 1.7
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 25/74 (33%)
Query: 45 IIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIR 104
I+AAG R+KS LP L C K + +EH ++D+++
Sbjct: 7 ILAAGKGTRMKSKLPKVLHKVC-----------------GKPM-----VEH---VVDSVK 41
Query: 105 KMGIRKIVILNAHG 118
K GI KIV + HG
Sbjct: 42 KAGIDKIVTVVGHG 55
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 28.1 bits (62), Expect = 2.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 127 VSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLA 175
++ + RF + V W RFT+P G+ I + G S LA
Sbjct: 444 ITIKLMARFGVTVERDGWQRFTVPAGVRYRSPGTIMVEGDASSASYFLA 492
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 27.9 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 214 SMKDLNPKGVVGNAMDATVKKGEG 237
++KDL P+ V +MD +K+G G
Sbjct: 284 TLKDLAPRDFVSRSMDQEIKEGRG 307
>gnl|CDD|114722 pfam06016, Reovirus_L2, Reovirus core-spike protein lambda-2 (L2).
This family consists of several Reovirus core-spike
protein lambda-2 (L2) sequences. The reovirus L2 genome
segment encodes the core spike protein lambda-2, which
mediates enzymatic reactions in 5' capping of the viral
plus-strand transcripts.
Length = 1289
Score = 27.5 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 53 RIKSILPPRLPVTCM----PVEPIG 73
RI S++PP LPVT EP G
Sbjct: 836 RILSLIPPTLPVTMCDTRPFAEPSG 860
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 26.9 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 34 HGPHLPMNTDTIIAAGLAERIKSILPPRL 62
HGP + ++I+ LAE + I P L
Sbjct: 77 HGPSGVIYYESILK--LAEELAEITPGGL 103
>gnl|CDD|184982 PRK15021, PRK15021, microcin C ABC transporter permease;
Provisional.
Length = 341
Score = 26.5 bits (58), Expect = 6.7
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 193 QSEFLR--NFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATV 232
++EFLR NF Y+RA + + G S + + + ++ NAM AT+
Sbjct: 223 RAEFLRTRNFDYIRA--AQALGVSDRSIILRHMLPNAMVATL 262
>gnl|CDD|163330 TIGR03568, NeuC_NnaA, UDP-N-acetyl-D-glucosamine 2-epimerase,
UDP-hydrolysing. This family of enzymes catalyzes the
combined epimerization and UDP-hydrolysis of
UDP-N-acetylglucosamine to N-acetylmannosamine. This is
in contrast to the related enzyme WecB (TIGR00236) which
retains the UDP moiety. NeuC acts in concert with NeuA
and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Length = 365
Score = 26.3 bits (59), Expect = 7.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 86 TLTYAEAIEHWLAIIDAIRKMGIRKIVIL-NAHGGNS 121
TL A E ++ A+ ++ I NA G+
Sbjct: 212 TLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSR 248
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 26.6 bits (59), Expect = 7.4
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 22/75 (29%)
Query: 203 LRAHGSHSFGWSMKDLNPKGVVG------NAMDATVKKGE---------------GLLSY 241
L A+G H G S K P+G++ NA+ TV G GL++
Sbjct: 34 LLANGVHLVGRSFKYHRPRGILTAGVEEPNAL-VTVGSGAQREPNTRATTQELYDGLVAT 92
Query: 242 FANCFIQLLNDINSF 256
N + L DI +F
Sbjct: 93 SQNRWPSLAFDIGAF 107
>gnl|CDD|180478 PRK06224, PRK06224, citrate synthase; Provisional.
Length = 263
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 30 AYEQHGPHLPMNTDTIIAAGLAE 52
G LP+N D IAA LA+
Sbjct: 186 LAAAKGKPLPLNVDGAIAAILAD 208
>gnl|CDD|131806 TIGR02759, TraD_Ftype, type IV conjugative transfer system coupling
protein TraD. The TraD protein performs an essential
coupling function in conjugative type IV secretion
systems. This protein sits at the inner membrane in
contact with the assembled pilus and its scaffold as
well as the relaxosome-plasmid DNA complex (through
TraM).
Length = 566
Score = 26.2 bits (58), Expect = 8.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 68 PVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIV 112
P+ G +H+ + GT + AI ++ IR+ G R I+
Sbjct: 168 PLIKFGSETQHILIHGTTGSGKSVAIRK---LLRWIRQRGDRAII 209
>gnl|CDD|185548 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 542
Score = 26.2 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 133 MRFSMLVVSTSWSRFTIPQGIISFPETEIGIHG 165
+RF+ V W+R I I+F E +IG G
Sbjct: 244 LRFANRVFEPLWNRNNIACVQITFKE-DIGTEG 275
>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family
consists of Ribulose-phosphate 3-epimerase, also known
as pentose-5-phosphate 3-epimerase (PPE). PPE converts
D-ribulose 5-phosphate into D-xylulose 5-phosphate in
Calvin's reductive pentose phosphate cycle. It has been
found in a wide range of bacteria, archebacteria, fungi
and plants.
Length = 210
Score = 26.1 bits (58), Expect = 8.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 89 YAEAIEHWLAIIDAIRKMGIRKIVILNAH 117
+ EA EH ++ I+ +G + ++LN
Sbjct: 86 HPEASEHIHRLLQLIKDLGAKAGIVLNPA 114
>gnl|CDD|162956 TIGR02635, RhaI_grampos, L-rhamnose isomerase, Streptomyces
subtype. This clade of sequences is closely related to
the L-rhamnose isomerases found in Pseudomonas stutzeri
and in a number of the Rhizobiales (TIGR02629). The
genes of the family represented here are found in
similar genomic contexts which contain genes apparently
involved in rhamnose catabolism such as
rhamnulose-1-phosphate aldolase (TIGR02632), sugar
kinases, and sugar transporters.
Length = 378
Score = 26.3 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 91 EAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122
+AI+H L +D +K G + I + A G N P
Sbjct: 113 KAIDHLLECVDIAKKTGSKDISLWLADGTNYP 144
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,523,224
Number of extensions: 289410
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 25
Length of query: 267
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,006,537
Effective search space: 701143975
Effective search space used: 701143975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)