RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] (267 letters) >3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis} Length = 254 Score = 197 bits (501), Expect = 3e-51 Identities = 64/262 (24%), Positives = 103/262 (39%), Gaps = 13/262 (4%) Query: 1 MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60 MN + + + L + + D +++LP GA E H HLP TD I+ +A + Sbjct: 2 MNKEVDLSVSCLGKVKELKYD-VIILPWGATEPHNLHLPYLTDCILPHDIAVEAAELALS 60 Query: 61 RLPVTCMPVEPIGY---SIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH 117 R V CM + P+ + + + YA I+ ++ G RK++IL+ H Sbjct: 61 RSGVRCMVMPPVPFGAHNPGQRELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSGH 120 Query: 118 GGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALA 177 GGN+ ++ A L+ + +W P+G E EI H GE ETS+M+ Sbjct: 121 GGNNFKG-MIRDLAFEYPDFLIAAANWFEVVSPKGYF---EAEIDDHAGESETSVMMHYH 176 Query: 178 PHLVKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEG 237 P LV + A + S+ VGN AT +KGE Sbjct: 177 PELVNLAEAGDGESKPFAI-----ASLNEKVAWVPRHWDKATVDSGVGNPKKATAEKGER 231 Query: 238 LLSYFANCFIQLLNDINSFDVS 259 + L ++ D+ Sbjct: 232 YVKPIVEKLAGLFEEMAQHDLY 253 >3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102} Length = 267 Score = 169 bits (430), Expect = 4e-43 Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 28/250 (11%) Query: 19 RKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEH 78 ++ ++ P+G+ EQHGP + TD I A +A + P +G ++ H Sbjct: 35 QQSKGIIFPIGSTEQHGPTGLIGTDAICAEAIAAG----VGDATGAIVGPTINVGMALHH 90 Query: 79 MYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSML 138 GT +L + I+ + + K G K +N HGGN + +E L Sbjct: 91 TAFPGTISLRPSTLIQVVRDYVTCLAKAGFSKFYFINGHGGNIATLKAAFSETYAHLEDL 150 Query: 139 VVSTS----------WSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKMDLAEN 188 ++ + + ++ + + G H E ++ + P +K Sbjct: 151 QIANAQQVQCQVANWFMCGSVYKLAKELYGDQEGSHATPSEVALTQYVYPEAIKQAPLSP 210 Query: 189 FSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVG-NAMDATVKKGEGLLSYFANCFI 247 + R + + F D G +G N AT + G+ Sbjct: 211 EVA---------SGHRIYSAADFRVRYPD----GRMGSNPGLATPEHGKQFYDLAVKELS 257 Query: 248 QLLNDINSFD 257 + + D Sbjct: 258 NGYLEFVNAD 267 >1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 1q3k_A Length = 260 Score = 165 bits (419), Expect = 9e-42 Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 18 ARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIE 77 A D +++LP+GA EQHG H+ MN D ++ + +R+ R+ MP GY + Sbjct: 20 AAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKRV----AERIGALVMPGLQYGYKSQ 75 Query: 78 HM-----YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEAR 132 + GT +L A II + + G R++V++N H NS + A Sbjct: 76 QKSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLAL 135 Query: 133 MRFS-------MLVVSTSWSRFTIPQGIISFPETEI----GIHGGEIETSMMLALAPHLV 181 +VV + W P I HGG ETS+MLAL P LV Sbjct: 136 RELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLV 195 Query: 182 KMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSY 241 +D + F G + +A A+ +KGE +L Sbjct: 196 DLDRVVDHPPA-----------TFPPYDVFPVDPARTPAPGTLSSAKTASREKGELILEV 244 Query: 242 FANCFIQLLND 252 + + Sbjct: 245 CVQGIADAIRE 255 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.2 bits (86), Expect = 0.004 Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 43/169 (25%) Query: 121 SPLVSIVSTEARMRFSMLVVSTSWSR-------FTIPQGIISFPE-TEIGIHGGEIETSM 172 + + + +LV + S+ F PE TE E T Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPA 58 Query: 173 MLALA--PHLVKMDLAENFSSRQSE-----FLRNF--KYLRAHGSHSFGWSMKDLNPKGV 223 L ++ L E Q + L F YL + H+ + N + Sbjct: 59 ELVGKFLGYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116 Query: 224 VGNAMDATVKKGEGLLSYFANCFI-----------QLLNDINSFDVSIF 261 VK E + +Y + L + + + Sbjct: 117 --------VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157 Score = 34.5 bits (79), Expect = 0.025 Identities = 56/357 (15%), Positives = 89/357 (24%), Gaps = 179/357 (50%) Query: 3 PLIIFTDNSL-PLCAD---ARK---------DWIVVLPLGAYEQHGPH-LPMNTDTIIAA 48 LI F+ +L L A K +W+ P P + D +++ Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL----------ENPSNTP-DKDYLLSI 234 Query: 49 GLAERIKSILPPRLPVTCMPVEPIGY-SIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMG 107 P++C P+ IG + H V + +G Sbjct: 235 --------------PISC-PL--IGVIQLAHYVV--------------------TAKLLG 257 Query: 108 IRKIVILNAHGGNSPLVSIVSTEARMRFSM-------LVV------STSWSRFT------ 148 +P E R LV + SW F Sbjct: 258 F------------TP------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299 Query: 149 ------IPQGIIS---FPETEI-------GIHGGEIETSMML--------ALAPHLVKMD 184 I G+ +P T + + E S ML + ++ K + Sbjct: 300 ITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357 Query: 185 --LAENFSSRQ---SEFLRNFKYLRAHGSHSF---GWSMKDLNPKGVVG-NAMDATVKKG 235 L +Q S L N G+ + G P+ + G N K Sbjct: 358 SHLPA---GKQVEIS--LVN-------GAKNLVVSG------PPQSLYGLNLTLRKAKAP 399 Query: 236 EGL------------------L--------SYFANCFIQLLNDINSFDVSIFDKDVQ 266 GL L + D+ +VS KD+Q Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* Length = 495 Score = 32.8 bits (73), Expect = 0.088 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 28/87 (32%) Query: 37 HLPMNTDTII-AAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIE 94 P +T ++ AAG R++S P + + + Sbjct: 2 TFPGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSM-----------------------LS 38 Query: 95 HWLAIIDAIRKMGIRKIVILNAHGGNS 121 H ++ AI K+ ++++++ H Sbjct: 39 H---VLHAIAKLAPQRLIVVLGHDHQR 62 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* Length = 456 Score = 28.4 bits (62), Expect = 1.7 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 27/78 (34%) Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103 I+AAG R+ S LP + P+ ++H +ID Sbjct: 10 ILAAGKGTRMYSDLPKVLHTIAGKPM-----------------------VKH---VIDTA 43 Query: 104 RKMGIRKIVILNAHGGNS 121 ++G I ++ HGG+ Sbjct: 44 HQLGSENIHLIYGHGGDL 61 >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 Score = 28.0 bits (61), Expect = 2.4 Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 Y+D T + TY E E A+R +G+ Sbjct: 42 YIDDTGSTTYGELEERARRFASALRTLGVHP 72 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A* 1g95_A* Length = 468 Score = 27.8 bits (60), Expect = 2.7 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 27/78 (34%) Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103 I+AAG R+KS LP V + + +EH + ++ Sbjct: 16 ILAAGKGTRMKSDLPKVLHKVAGISM-----------------------LEH---VFRSV 49 Query: 104 RKMGIRKIVILNAHGGNS 121 + K V + H Sbjct: 50 GAIQPEKTVTVVGHKAEL 67 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Length = 456 Score = 27.7 bits (60), Expect = 3.0 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 27/78 (34%) Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103 I+AAG R+ S LP + + ++H +IDA Sbjct: 10 ILAAGKGTRMYSDLPKVLHTLAGKAM-----------------------VQH---VIDAA 43 Query: 104 RKMGIRKIVILNAHGGNS 121 ++G + ++ HGG+ Sbjct: 44 NELGAAHVHLVYGHGGDL 61 >3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Score = 27.3 bits (60), Expect = 3.4 Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 78 HMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 H+ T+ +A+ I +RKMG + + +N GG Sbjct: 233 HLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGG 274 >3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* Length = 438 Score = 27.4 bits (60), Expect = 3.6 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 77 EHMYVDGTKTLTYAE----AIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122 H Y G+ + T A A+EH L I+ + +G + + + G N P Sbjct: 138 AHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFP 187 >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine carrier protein ligase, cytoplasm; HET: ATP; 1.90A {Bacillus cereus atcc 14579} PDB: 3fcc_A* 3dhv_A* Length = 512 Score = 27.3 bits (59), Expect = 4.0 Identities = 8/43 (18%), Positives = 14/43 (32%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122 +V +TY + E A+ I + +G P Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQP 62 >3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} Length = 1001 Score = 27.3 bits (60), Expect = 4.2 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 72 IGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEA 131 YS + + G T A+A ++ A AI +G N + P +S+ + Sbjct: 190 TRYSFDML---GEGARTAADARRYFDAYASAIETIGKAA---GNHALPDRPGISVKLSAL 243 Query: 132 RMRFSML 138 RF + Sbjct: 244 HPRFEAI 250 >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 Score = 26.8 bits (58), Expect = 5.0 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 G +Y E + +K+GI++ Sbjct: 44 ITCGNTHWSYRELDTRADRLAAGFQKLGIQQ 74 >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein structure initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 Score = 26.8 bits (58), Expect = 5.6 Identities = 3/31 (9%), Positives = 12/31 (38%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 ++ LT+ + + + + + G+ Sbjct: 25 FMVDGVRLTHRDYLARAERLASGLLRDGVHT 55 >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} Length = 521 Score = 26.7 bits (58), Expect = 5.9 Identities = 6/43 (13%), Positives = 13/43 (30%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122 Y + TY + +I I + + + G + Sbjct: 23 YDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY 65 >3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM barrel; HET: PSJ; 1.60A {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A* 3ito_A* Length = 438 Score = 26.4 bits (58), Expect = 6.2 Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 90 AEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123 A+A+EH L I+ + +G + + + G N P Sbjct: 155 AQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPG 188 >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Bacillus brevis} SCOP: e.23.1.1 Length = 563 Score = 26.4 bits (57), Expect = 6.5 Identities = 8/30 (26%), Positives = 11/30 (36%) Query: 81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 V + LTY E + + GI K Sbjct: 59 VCENEQLTYHELNVKANQLARIFIEKGIGK 88 >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U Length = 1289 Score = 26.4 bits (58), Expect = 6.9 Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 53 RIKSILPPRLPVTCMPVEP 71 +I ++P PVTC+ + P Sbjct: 835 KILELIPATSPVTCVDIRP 853 >1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 159 Score = 26.3 bits (58), Expect = 7.6 Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205 M L P V + + + + E++ NFK L+A Sbjct: 54 FMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQA 87 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* Length = 258 Score = 26.2 bits (56), Expect = 7.8 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 G L EA+E + + R+ R +VI+ HGG Sbjct: 10 GGVLLDSEEALERLFSALVNYRESHQRPLVIV--HGG 44 >3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} Length = 384 Score = 26.1 bits (57), Expect = 8.5 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%) Query: 40 MNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAI 99 +T + GLAE I + + EH V + +Y + E Sbjct: 21 PHTSQSLVTGLAENIA-----------TKNCKVVFKAEHKIVKYLENGSYKDVFEMLKDF 69 Query: 100 IDAIRKM-GIRKIVILNAHGG 119 + + + I I HGG Sbjct: 70 LVENKHLEKIVAIGHRVVHGG 90 >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A Length = 1299 Score = 26.1 bits (56), Expect = 8.6 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 45 IIAAGLAERIKSILPPRLPVTCMPVEP 71 + G RI S++PP L VT P Sbjct: 833 DLGTGPECRILSLIPPTLQVTMSDSRP 859 >2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Length = 123 Score = 26.3 bits (58), Expect = 8.7 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205 M L P + + + + + E+++NFK L+A Sbjct: 37 FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA 70 >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8 d.142.1.9 Length = 320 Score = 26.1 bits (57), Expect = 8.7 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 97 LAIIDAIRKMGIRKIVILN 115 L I+ +K G + + ++ Sbjct: 14 LQILLGAKKEGFKTRLYVS 32 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0542 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,389,261 Number of extensions: 110640 Number of successful extensions: 559 Number of sequences better than 10.0: 1 Number of HSP's gapped: 542 Number of HSP's successfully gapped: 42 Length of query: 267 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 176 Effective length of database: 3,487,026 Effective search space: 613716576 Effective search space used: 613716576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)