RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase
[Candidatus Liberibacter asiaticus str. psy62]
(267 letters)
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; 2.11A {Bacteroides fragilis}
Length = 254
Score = 197 bits (501), Expect = 3e-51
Identities = 64/262 (24%), Positives = 103/262 (39%), Gaps = 13/262 (4%)
Query: 1 MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60
MN + + + L + + D +++LP GA E H HLP TD I+ +A +
Sbjct: 2 MNKEVDLSVSCLGKVKELKYD-VIILPWGATEPHNLHLPYLTDCILPHDIAVEAAELALS 60
Query: 61 RLPVTCMPVEPIGY---SIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAH 117
R V CM + P+ + + + YA I+ ++ G RK++IL+ H
Sbjct: 61 RSGVRCMVMPPVPFGAHNPGQRELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSGH 120
Query: 118 GGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALA 177
GGN+ ++ A L+ + +W P+G E EI H GE ETS+M+
Sbjct: 121 GGNNFKG-MIRDLAFEYPDFLIAAANWFEVVSPKGYF---EAEIDDHAGESETSVMMHYH 176
Query: 178 PHLVKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEG 237
P LV + A + S+ VGN AT +KGE
Sbjct: 177 PELVNLAEAGDGESKPFAI-----ASLNEKVAWVPRHWDKATVDSGVGNPKKATAEKGER 231
Query: 238 LLSYFANCFIQLLNDINSFDVS 259
+ L ++ D+
Sbjct: 232 YVKPIVEKLAGLFEEMAQHDLY 253
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc
73102}
Length = 267
Score = 169 bits (430), Expect = 4e-43
Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 28/250 (11%)
Query: 19 RKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEH 78
++ ++ P+G+ EQHGP + TD I A +A + P +G ++ H
Sbjct: 35 QQSKGIIFPIGSTEQHGPTGLIGTDAICAEAIAAG----VGDATGAIVGPTINVGMALHH 90
Query: 79 MYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEARMRFSML 138
GT +L + I+ + + K G K +N HGGN + +E L
Sbjct: 91 TAFPGTISLRPSTLIQVVRDYVTCLAKAGFSKFYFINGHGGNIATLKAAFSETYAHLEDL 150
Query: 139 VVSTS----------WSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKMDLAEN 188
++ + + ++ + + G H E ++ + P +K
Sbjct: 151 QIANAQQVQCQVANWFMCGSVYKLAKELYGDQEGSHATPSEVALTQYVYPEAIKQAPLSP 210
Query: 189 FSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVG-NAMDATVKKGEGLLSYFANCFI 247
+ R + + F D G +G N AT + G+
Sbjct: 211 EVA---------SGHRIYSAADFRVRYPD----GRMGSNPGLATPEHGKQFYDLAVKELS 257
Query: 248 QLLNDINSFD 257
+ + D
Sbjct: 258 NGYLEFVNAD 267
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase,
substrate complex; 1.60A {Pseudomonas SP} SCOP:
c.125.1.1 PDB: 1j2u_A 1j2t_A 1q3k_A
Length = 260
Score = 165 bits (419), Expect = 9e-42
Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 31/251 (12%)
Query: 18 ARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIE 77
A D +++LP+GA EQHG H+ MN D ++ + +R+ R+ MP GY +
Sbjct: 20 AAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKRV----AERIGALVMPGLQYGYKSQ 75
Query: 78 HM-----YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEAR 132
+ GT +L A II + + G R++V++N H NS + A
Sbjct: 76 QKSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLAL 135
Query: 133 MRFS-------MLVVSTSWSRFTIPQGIISFPETEI----GIHGGEIETSMMLALAPHLV 181
+VV + W P I HGG ETS+MLAL P LV
Sbjct: 136 RELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLV 195
Query: 182 KMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSY 241
+D + F G + +A A+ +KGE +L
Sbjct: 196 DLDRVVDHPPA-----------TFPPYDVFPVDPARTPAPGTLSSAKTASREKGELILEV 244
Query: 242 FANCFIQLLND 252
+ +
Sbjct: 245 CVQGIADAIRE 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.2 bits (86), Expect = 0.004
Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 43/169 (25%)
Query: 121 SPLVSIVSTEARMRFSMLVVSTSWSR-------FTIPQGIISFPE-TEIGIHGGEIETSM 172
+ + + +LV + S+ F PE TE E T
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPA 58
Query: 173 MLALA--PHLVKMDLAENFSSRQSE-----FLRNF--KYLRAHGSHSFGWSMKDLNPKGV 223
L ++ L E Q + L F YL + H+ + N +
Sbjct: 59 ELVGKFLGYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 224 VGNAMDATVKKGEGLLSYFANCFI-----------QLLNDINSFDVSIF 261
VK E + +Y + L + + +
Sbjct: 117 --------VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Score = 34.5 bits (79), Expect = 0.025
Identities = 56/357 (15%), Positives = 89/357 (24%), Gaps = 179/357 (50%)
Query: 3 PLIIFTDNSL-PLCAD---ARK---------DWIVVLPLGAYEQHGPH-LPMNTDTIIAA 48
LI F+ +L L A K +W+ P P + D +++
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL----------ENPSNTP-DKDYLLSI 234
Query: 49 GLAERIKSILPPRLPVTCMPVEPIGY-SIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMG 107
P++C P+ IG + H V + +G
Sbjct: 235 --------------PISC-PL--IGVIQLAHYVV--------------------TAKLLG 257
Query: 108 IRKIVILNAHGGNSPLVSIVSTEARMRFSM-------LVV------STSWSRFT------ 148
+P E R LV + SW F
Sbjct: 258 F------------TP------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 149 ------IPQGIIS---FPETEI-------GIHGGEIETSMML--------ALAPHLVKMD 184
I G+ +P T + + E S ML + ++ K +
Sbjct: 300 ITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 185 --LAENFSSRQ---SEFLRNFKYLRAHGSHSF---GWSMKDLNPKGVVG-NAMDATVKKG 235
L +Q S L N G+ + G P+ + G N K
Sbjct: 358 SHLPA---GKQVEIS--LVN-------GAKNLVVSG------PPQSLYGLNLTLRKAKAP 399
Query: 236 EGL------------------L--------SYFANCFIQLLNDINSFDVSIFDKDVQ 266
GL L + D+ +VS KD+Q
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann-like fold, LEFT-handed-beta-helix, trimer, cell
shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A
3d98_A* 3dj4_A 3foq_A 2qkx_A*
Length = 495
Score = 32.8 bits (73), Expect = 0.088
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 28/87 (32%)
Query: 37 HLPMNTDTII-AAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIE 94
P +T ++ AAG R++S P + + +
Sbjct: 2 TFPGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSM-----------------------LS 38
Query: 95 HWLAIIDAIRKMGIRKIVILNAHGGNS 121
H ++ AI K+ ++++++ H
Sbjct: 39 H---VLHAIAKLAPQRLIVVLGHDHQR 62
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
Length = 456
Score = 28.4 bits (62), Expect = 1.7
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 27/78 (34%)
Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103
I+AAG R+ S LP + P+ ++H +ID
Sbjct: 10 ILAAGKGTRMYSDLPKVLHTIAGKPM-----------------------VKH---VIDTA 43
Query: 104 RKMGIRKIVILNAHGGNS 121
++G I ++ HGG+
Sbjct: 44 HQLGSENIHLIYGHGGDL 61
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 28.0 bits (61), Expect = 2.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
Y+D T + TY E E A+R +G+
Sbjct: 42 YIDDTGSTTYGELEERARRFASALRTLGVHP 72
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
1g95_A*
Length = 468
Score = 27.8 bits (60), Expect = 2.7
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 27/78 (34%)
Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103
I+AAG R+KS LP V + + +EH + ++
Sbjct: 16 ILAAGKGTRMKSDLPKVLHKVAGISM-----------------------LEH---VFRSV 49
Query: 104 RKMGIRKIVILNAHGGNS 121
+ K V + H
Sbjct: 50 GAIQPEKTVTVVGHKAEL 67
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 27.7 bits (60), Expect = 3.0
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 27/78 (34%)
Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103
I+AAG R+ S LP + + ++H +IDA
Sbjct: 10 ILAAGKGTRMYSDLPKVLHTLAGKAM-----------------------VQH---VIDAA 43
Query: 104 RKMGIRKIVILNAHGGNS 121
++G + ++ HGG+
Sbjct: 44 NELGAAHVHLVYGHGGDL 61
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: PLP; 3.00A
{Campylobacter jejuni subsp}
Length = 619
Score = 27.3 bits (60), Expect = 3.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 78 HMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119
H+ T+ +A+ I +RKMG + + +N GG
Sbjct: 233 HLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGG 274
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
metal-binding protein, TIM isomerase; HET: AOS; 1.45A
{Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A*
3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A
3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A*
Length = 438
Score = 27.4 bits (60), Expect = 3.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 77 EHMYVDGTKTLTYAE----AIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122
H Y G+ + T A A+EH L I+ + +G + + + G N P
Sbjct: 138 AHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFP 187
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine carrier protein ligase,
cytoplasm; HET: ATP; 1.90A {Bacillus cereus atcc 14579}
PDB: 3fcc_A* 3dhv_A*
Length = 512
Score = 27.3 bits (59), Expect = 4.0
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122
+V +TY + E A+ I + +G P
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQP 62
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 27.3 bits (60), Expect = 4.2
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 72 IGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEA 131
YS + + G T A+A ++ A AI +G N + P +S+ +
Sbjct: 190 TRYSFDML---GEGARTAADARRYFDAYASAIETIGKAA---GNHALPDRPGISVKLSAL 243
Query: 132 RMRFSML 138
RF +
Sbjct: 244 HPRFEAI 250
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 26.8 bits (58), Expect = 5.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
G +Y E + +K+GI++
Sbjct: 44 ITCGNTHWSYRELDTRADRLAAGFQKLGIQQ 74
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein structure initiative, fatty acid
synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 26.8 bits (58), Expect = 5.6
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
++ LT+ + + + + + G+
Sbjct: 25 FMVDGVRLTHRDYLARAERLASGLLRDGVHT 55
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6}
Length = 521
Score = 26.7 bits (58), Expect = 5.9
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSP 122
Y + TY + +I I + + + G +
Sbjct: 23 YDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY 65
>3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
metal-binding protein, TIM barrel; HET: PSJ; 1.60A
{Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A*
2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A*
3ito_A*
Length = 438
Score = 26.4 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 90 AEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPL 123
A+A+EH L I+ + +G + + + G N P
Sbjct: 155 AQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPG 188
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Bacillus brevis} SCOP:
e.23.1.1
Length = 563
Score = 26.4 bits (57), Expect = 6.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 81 VDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
V + LTY E + + GI K
Sbjct: 59 VCENEQLTYHELNVKANQLARIFIEKGIGK 88
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_U
Length = 1289
Score = 26.4 bits (58), Expect = 6.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 53 RIKSILPPRLPVTCMPVEP 71
+I ++P PVTC+ + P
Sbjct: 835 KILELIPATSPVTCVDIRP 853
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3;
CH domain, microtubule-binding, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 159
Score = 26.3 bits (58), Expect = 7.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205
M L P V + + + + E++ NFK L+A
Sbjct: 54 FMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQA 87
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A*
Length = 258
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119
G L EA+E + + R+ R +VI+ HGG
Sbjct: 10 GGVLLDSEEALERLFSALVNYRESHQRPLVIV--HGG 44
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding,
nucleotide-binding, transferase, structural genomics;
1.98A {Francisella tularensis subsp}
Length = 384
Score = 26.1 bits (57), Expect = 8.5
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 40 MNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAI 99
+T + GLAE I + + EH V + +Y + E
Sbjct: 21 PHTSQSLVTGLAENIA-----------TKNCKVVFKAEHKIVKYLENGSYKDVFEMLKDF 69
Query: 100 IDAIRKM-GIRKIVILNAHGG 119
+ + + I I HGG
Sbjct: 70 LVENKHLEKIVAIGHRVVHGG 90
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_A
Length = 1299
Score = 26.1 bits (56), Expect = 8.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 45 IIAAGLAERIKSILPPRLPVTCMPVEP 71
+ G RI S++PP L VT P
Sbjct: 833 DLGTGPECRILSLIPPTLQVTMSDSRP 859
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
homology domain, microtubule plus END, +TIP, protein
binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A
1ueg_A 3co1_A 1v5k_A
Length = 123
Score = 26.3 bits (58), Expect = 8.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205
M L P + + + + + E+++NFK L+A
Sbjct: 37 FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA 70
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP, structural genomics; HET: ATP;
2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8
d.142.1.9
Length = 320
Score = 26.1 bits (57), Expect = 8.7
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 97 LAIIDAIRKMGIRKIVILN 115
L I+ +K G + + ++
Sbjct: 14 LQILLGAKKEGFKTRLYVS 32
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,389,261
Number of extensions: 110640
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 42
Length of query: 267
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 176
Effective length of database: 3,487,026
Effective search space: 613716576
Effective search space used: 613716576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)