RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] (267 letters) >d1v7za_ c.125.1.1 (A:) Creatininase {Pseudomonas putida [TaxId: 303]} Length = 257 Score = 165 bits (418), Expect = 4e-42 Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 31/251 (12%) Query: 18 ARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIE 77 A D +++LP+GA EQHG H+ MN D ++ + +R + R+ MP GY + Sbjct: 18 AAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKR----VAERIGALVMPGLQYGYKSQ 73 Query: 78 HM-----YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEAR 132 + GT +L A II + + G R++V++N H NS + A Sbjct: 74 QKSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLAL 133 Query: 133 MRFS-------MLVVSTSWSRFTIPQGIISFPETEI----GIHGGEIETSMMLALAPHLV 181 +VV + W P I HGG ETS+MLAL P LV Sbjct: 134 RELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLV 193 Query: 182 KMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSY 241 +D + F G + +A A+ +KGE +L Sbjct: 194 DLDRVVDHPPA-----------TFPPYDVFPVDPARTPAPGTLSSAKTASREKGELILEV 242 Query: 242 FANCFIQLLND 252 + + Sbjct: 243 CVQGIADAIRE 253 >d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 97 Score = 27.0 bits (60), Expect = 1.7 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 13/75 (17%) Query: 104 RKMG--IRKIVIL-----NAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISF 156 RK G IR I IL N + NS + I + + + V S++ QG Sbjct: 1 RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKY-- 58 Query: 157 PETEIGIHGGEIETS 171 I I +ET+ Sbjct: 59 ----IAIASTTVETT 69 >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 Score = 26.5 bits (57), Expect = 2.5 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 G +Y E + +K+GI++ Sbjct: 44 ITCGNTHWSYRELDTRADRLAAGFQKLGIQQ 74 >d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Score = 26.4 bits (58), Expect = 2.6 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 99 IIDAIRKMGIRKI-VILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGI 153 ++ I+++ +I + GG+ R++ S S T+ GI Sbjct: 14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGI 69 >d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Score = 26.3 bits (58), Expect = 3.2 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205 M L P + + + + + E+++NFK L+A Sbjct: 35 FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA 68 >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Length = 327 Score = 25.9 bits (55), Expect = 3.3 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 15/100 (15%) Query: 61 RLPVT---------CMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKI 111 RL VT CMP E G + + T + I ++G++KI Sbjct: 15 RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTF------DEMARIAKVYAELGVKKI 68 Query: 112 VILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQ 151 I + ++ + + + + + + + Sbjct: 69 RITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKK 108 >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 Score = 26.0 bits (56), Expect = 3.6 Identities = 8/31 (25%), Positives = 11/31 (35%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 V + LTY E + + GI K Sbjct: 42 IVCENEQLTYHELNVKANQLARIFIEKGIGK 72 >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 150 Score = 25.5 bits (55), Expect = 4.3 Identities = 12/112 (10%), Positives = 28/112 (25%), Gaps = 12/112 (10%) Query: 4 LIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLP 63 + +F D + C + LG ++ + A ++ Sbjct: 30 VTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAK------------QME 77 Query: 64 VTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILN 115 +P+ E + K + ++ + G IV Sbjct: 78 AIWTAKDPVFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTST 129 >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Length = 258 Score = 25.5 bits (54), Expect = 4.6 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 83 GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNS 121 G L EA+E + + R+ R +VI+ HGG Sbjct: 10 GGVLLDSEEALERLFSALVNYRESHQRPLVIV--HGGGC 46 >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 Score = 25.5 bits (55), Expect = 4.8 Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 51 AERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLA 98 A RI++ L P+ + + IG + ++ E ++ Sbjct: 20 ARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS 67 >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 Score = 25.4 bits (54), Expect = 5.6 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 27/77 (35%) Query: 45 IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103 I+AAG R+ S LP + + ++H +IDA Sbjct: 7 ILAAGKGTRMYSDLPKVLHTLAGKAM------VQH--------------------VIDAA 40 Query: 104 RKMGIRKIVILNAHGGN 120 ++G + ++ HGG+ Sbjct: 41 NELGAAHVHLVYGHGGD 57 >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 Score = 25.0 bits (53), Expect = 6.0 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 27/81 (33%) Query: 41 NTDTIIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAI 99 N I+AAG R+KS LP V + + +EH + Sbjct: 2 NFAIILAAGKGTRMKSDLPKVLHKVAGISM------LEH--------------------V 35 Query: 100 IDAIRKMGIRKIVILNAHGGN 120 ++ + K V + H Sbjct: 36 FRSVGAIQPEKTVTVVGHKAE 56 >d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Score = 25.0 bits (55), Expect = 6.9 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 38 LPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSI 76 P + +T +A L E ++SI L + P+GY I Sbjct: 13 KPWDDETDMAK-LEECVRSIQADGLVWGSSKLVPVGYGI 50 >d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98 Score = 25.0 bits (55), Expect = 7.5 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 14/76 (18%) Query: 104 RKMG---IRKIVIL-----NAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIIS 155 + G IR I IL N +S + I ++ + + V S + +G Sbjct: 1 KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGH-- 58 Query: 156 FPETEIGIHGGEIETS 171 + I IET Sbjct: 59 ----YLAIISTIIETD 70 >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 Score = 24.6 bits (52), Expect = 8.9 Identities = 7/31 (22%), Positives = 11/31 (35%) Query: 80 YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110 LT+AE A+ + G+R Sbjct: 23 VPARGLRLTHAELRARVEAVAARLHADGLRP 53 >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 Score = 24.4 bits (52), Expect = 9.5 Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 90 AEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119 E I H I+ +K +V+++A Sbjct: 14 GERIRHVAKIVTKRKKEDDDVVVVVSAMSE 43 >d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 89 Score = 24.6 bits (54), Expect = 9.9 Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 50 LAERIKSILPPRLPVTCMPVEPIGYSIEHMYV 81 L + I+ +P + + EPI + + + V Sbjct: 22 LKKEIQERIPEGTELHKIDEEPIAFGLVALNV 53 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0419 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,033,264 Number of extensions: 48111 Number of successful extensions: 192 Number of sequences better than 10.0: 1 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 24 Length of query: 267 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,254,276 Effective search space: 229532508 Effective search space used: 229532508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.6 bits)