RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase
[Candidatus Liberibacter asiaticus str. psy62]
         (267 letters)



>d1v7za_ c.125.1.1 (A:) Creatininase {Pseudomonas putida [TaxId:
           303]}
          Length = 257

 Score =  165 bits (418), Expect = 4e-42
 Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 31/251 (12%)

Query: 18  ARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSIE 77
           A  D +++LP+GA EQHG H+ MN D ++   + +R    +  R+    MP    GY  +
Sbjct: 18  AAGDCVLMLPVGALEQHGHHMCMNVDVLLPTAVCKR----VAERIGALVMPGLQYGYKSQ 73

Query: 78  HM-----YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNSPLVSIVSTEAR 132
                  +  GT +L  A        II  + + G R++V++N H  NS  +      A 
Sbjct: 74  QKSGGGNHFPGTTSLDGATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLAL 133

Query: 133 MRFS-------MLVVSTSWSRFTIPQGIISFPETEI----GIHGGEIETSMMLALAPHLV 181
                       +VV + W     P  I              HGG  ETS+MLAL P LV
Sbjct: 134 RELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGVFETSLMLALYPDLV 193

Query: 182 KMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLSY 241
            +D   +                      F          G + +A  A+ +KGE +L  
Sbjct: 194 DLDRVVDHPPA-----------TFPPYDVFPVDPARTPAPGTLSSAKTASREKGELILEV 242

Query: 242 FANCFIQLLND 252
                   + +
Sbjct: 243 CVQGIADAIRE 253


>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation
           inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
          Length = 97

 Score = 27.0 bits (60), Expect = 1.7
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 104 RKMG--IRKIVIL-----NAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISF 156
           RK G  IR I IL     N +  NS  + I   +   +  + V   S++     QG    
Sbjct: 1   RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKY-- 58

Query: 157 PETEIGIHGGEIETS 171
               I I    +ET+
Sbjct: 59  ----IAIASTTVETT 69


>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
           subtilis [TaxId: 1423]}
          Length = 536

 Score = 26.5 bits (57), Expect = 2.5
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 80  YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
              G    +Y E       +    +K+GI++
Sbjct: 44  ITCGNTHWSYRELDTRADRLAAGFQKLGIQQ 74


>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 99  IIDAIRKMGIRKI-VILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGI 153
           ++  I+++   +I   +   GG+           R++      S   S  T+  GI
Sbjct: 14  VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGI 69


>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
           N-terminal microtubule binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 120

 Score = 26.3 bits (58), Expect = 3.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 172 MMLALAPHLVKMDLAENFSSRQSEFLRNFKYLRA 205
            M  L P  + +   +  +  + E+++NFK L+A
Sbjct: 35  FMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA 68


>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
           MoaA {Staphylococcus aureus [TaxId: 1280]}
          Length = 327

 Score = 25.9 bits (55), Expect = 3.3
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 61  RLPVT---------CMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKI 111
           RL VT         CMP E  G     +  +   T       +    I     ++G++KI
Sbjct: 15  RLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTF------DEMARIAKVYAELGVKKI 68

Query: 112 VILNAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQ 151
            I          + ++  +      +  +  + +   + +
Sbjct: 69  RITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKK 108


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 26.0 bits (56), Expect = 3.6
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 80  YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
            V   + LTY E       +     + GI K
Sbjct: 42  IVCENEQLTYHELNVKANQLARIFIEKGIGK 72


>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
           C-terminal domain {Haemophilus influenzae [TaxId: 727]}
          Length = 150

 Score = 25.5 bits (55), Expect = 4.3
 Identities = 12/112 (10%), Positives = 28/112 (25%), Gaps = 12/112 (10%)

Query: 4   LIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRLP 63
           + +F D +   C    +       LG   ++        +   A             ++ 
Sbjct: 30  VTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAK------------QME 77

Query: 64  VTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILN 115
                 +P+    E    +  K +     ++    +       G   IV   
Sbjct: 78  AIWTAKDPVFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTST 129


>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
           [TaxId: 562]}
          Length = 258

 Score = 25.5 bits (54), Expect = 4.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 83  GTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGNS 121
           G   L   EA+E   + +   R+   R +VI+  HGG  
Sbjct: 10  GGVLLDSEEALERLFSALVNYRESHQRPLVIV--HGGGC 46


>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
          BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
          Length = 121

 Score = 25.5 bits (55), Expect = 4.8
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 51 AERIKSILPPRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLA 98
          A RI++ L P+  +  +    IG  +          ++  E     ++
Sbjct: 20 ARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS 67


>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Escherichia
           coli [TaxId: 562]}
          Length = 248

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 27/77 (35%)

Query: 45  IIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAI 103
           I+AAG   R+ S LP     +    +      ++H                    +IDA 
Sbjct: 7   ILAAGKGTRMYSDLPKVLHTLAGKAM------VQH--------------------VIDAA 40

Query: 104 RKMGIRKIVILNAHGGN 120
            ++G   + ++  HGG+
Sbjct: 41  NELGAAHVHLVYGHGGD 57


>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 250

 Score = 25.0 bits (53), Expect = 6.0
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 27/81 (33%)

Query: 41  NTDTIIAAGLAERIKSILP-PRLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAI 99
           N   I+AAG   R+KS LP     V  + +      +EH                    +
Sbjct: 2   NFAIILAAGKGTRMKSDLPKVLHKVAGISM------LEH--------------------V 35

Query: 100 IDAIRKMGIRKIVILNAHGGN 120
             ++  +   K V +  H   
Sbjct: 36  FRSVGAIQPEKTVTVVGHKAE 56


>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
          domain from elongation factor-1 beta {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 91

 Score = 25.0 bits (55), Expect = 6.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 38 LPMNTDTIIAAGLAERIKSILPPRLPVTCMPVEPIGYSI 76
           P + +T +A  L E ++SI    L      + P+GY I
Sbjct: 13 KPWDDETDMAK-LEECVRSIQADGLVWGSSKLVPVGYGI 50


>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation
           inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 98

 Score = 25.0 bits (55), Expect = 7.5
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 104 RKMG---IRKIVIL-----NAHGGNSPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIIS 155
           +  G   IR I IL     N    +S  + I  ++   +  + V   S +     +G   
Sbjct: 1   KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGH-- 58

Query: 156 FPETEIGIHGGEIETS 171
                + I    IET 
Sbjct: 59  ----YLAIISTIIETD 70


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 80  YVDGTKTLTYAEAIEHWLAIIDAIRKMGIRK 110
                  LT+AE      A+   +   G+R 
Sbjct: 23  VPARGLRLTHAELRARVEAVAARLHADGLRP 53


>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii
           [TaxId: 2190]}
          Length = 302

 Score = 24.4 bits (52), Expect = 9.5
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 90  AEAIEHWLAIIDAIRKMGIRKIVILNAHGG 119
            E I H   I+   +K     +V+++A   
Sbjct: 14  GERIRHVAKIVTKRKKEDDDVVVVVSAMSE 43


>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 89

 Score = 24.6 bits (54), Expect = 9.9
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 50 LAERIKSILPPRLPVTCMPVEPIGYSIEHMYV 81
          L + I+  +P    +  +  EPI + +  + V
Sbjct: 22 LKKEIQERIPEGTELHKIDEEPIAFGLVALNV 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,033,264
Number of extensions: 48111
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 24
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)