BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] (267 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780633|ref|YP_003065046.1| creatinine amidohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 554 bits (1427), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60 MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP Sbjct: 1 MNPLIIFTDNSLPLCADARKDWIVVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPP 60 Query: 61 RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN Sbjct: 61 RLPVTCMPVEPIGYSIEHMYVDGTKTLTYAEAIEHWLAIIDAIRKMGIRKIVILNAHGGN 120 Query: 121 SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL 180 SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL Sbjct: 121 SPLVSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHL 180 Query: 181 VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS 240 VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS Sbjct: 181 VKMDLAENFSSRQSEFLRNFKYLRAHGSHSFGWSMKDLNPKGVVGNAMDATVKKGEGLLS 240 Query: 241 YFANCFIQLLNDINSFDVSIFDKDVQK 267 YFANCFIQLLNDINSFDVSIFDKDVQK Sbjct: 241 YFANCFIQLLNDINSFDVSIFDKDVQK 267 >gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 28.1 bits (61), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 124 VSIVSTEARMRFSMLVVSTSWSRFTIPQGIISFPETEIGIHGGEIETSMMLALAPHLVKM 183 +SIV+ F + + + SR TIP+G + + + G + S V++ Sbjct: 280 ISIVTVAMGGTFDVATLDATHSRVTIPEGTQTGKQFRLKGKGMPVINSGRKGDLYVQVQV 339 Query: 184 DLAENFSSRQSEFLRNFKYLRAHG----SHSFGWSMKDL 218 + + + RQ E L F+ + + S F MKD Sbjct: 340 ETPQKLNKRQRELLEEFEQISSQDNNPQSTGFFARMKDF 378 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 26.2 bits (56), Expect = 0.55, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Query: 10 NSLPLCADARKDWI--VVLPLGAYEQHGPHLPMNTDTIIAAGLAERIKSILPPRL 62 N +PL + RKDWI ++ + + +H L ++++ E I+ + P +L Sbjct: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE--------ENIEDLFPYKL 351 >gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 563 Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 20/33 (60%) Query: 235 GEGLLSYFANCFIQLLNDINSFDVSIFDKDVQK 267 +GL S +N +L + +NSF ++ F +++ + Sbjct: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,814 Number of Sequences: 1233 Number of extensions: 6991 Number of successful extensions: 13 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 5 length of query: 267 length of database: 328,796 effective HSP length: 72 effective length of query: 195 effective length of database: 240,020 effective search space: 46803900 effective search space used: 46803900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)