HHsearch alignment for GI: 254780634 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=95.72 E-value=0.041 Score=34.08 Aligned_cols=129 Identities=15% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC--
Q ss_conf 542112366666258601346882799999986168810055249899999999987502886088215543445723--
Q gi|254780634|r 221 QIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQE-- 298 (429)
Q Consensus 221 ql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~-- 298 (429)
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHHCCCCHHHC
T ss_conf 99998557899986999789877889999960---6957999968899999997506--566559994724247513515
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 24678962754450444442236672496789-9999987899999999608983899977588
Q gi|254780634|r 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNL-IERTEEQKKILEESAQFVRPEGYLVYITCSI 361 (429)
Q Consensus 299 ~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~-~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 361 (429)
T Consensus 95 ~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeR---l~A~pgsk~Yg~LsV 151 (259)
T COG0030 95 QPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAER---LVAKPGSKDYGRLSV 151 (259)
T ss_pred CCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHH---HHCCCCCCCCCHHHH
T ss_conf 7888998089765679999----99846676542899829999999---717889865206655