HHsearch alignment for GI: 254780634 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=601.80 Aligned_cols=298 Identities=33% Similarity=0.536 Sum_probs=261.3
Q ss_pred HHHCCCHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 35089988999999857448-99999986289861112477889989999989871887545--4754311345665444
Q gi|254780634|r 122 IQGNIPQWLQSSFQSYFKDT-WLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS--ISRFGLRIPATKGKSR 198 (429)
Q Consensus 122 i~~s~P~WL~~~~~~~~ge~-~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~--~~~~~~~l~~~~~~~~ 198 (429)
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~----- 124 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEAS----- 124 (355)
T ss_pred HHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECC-----
T ss_conf 122063999999998826447999999715688725775264478789999864425534466655645897158-----
Q ss_pred CCCHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-HHHHCCHHHHHHHHHHHH
Q ss_conf 6101109631265489841556542112366666258601346882799999986168810-055249899999999987
Q gi|254780634|r 199 LPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQI-HAWDNNKSRMAPIVARIK 277 (429)
Q Consensus 199 ~~~~~~~~~f~~G~~~VQD~aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i-~A~D~~~~Rl~~l~~~~~ 277 (429)
T Consensus 125 -~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~ 203 (355)
T COG0144 125 -GPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK 203 (355)
T ss_pred -CCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf -8765683560448999677876679971999979688807999769999999668998769974498789999999999
Q ss_pred HCCCCCCEEEECCCC-CCC---CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 502886088215543-445---7232467896275445044444223667249678999999878999999996089838
Q gi|254780634|r 278 RAGIHNVQLHSSWES-LRN---LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY 353 (429)
Q Consensus 278 r~g~~~v~~~~~~~~-~~~---~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~ 353 (429)
T Consensus 204 RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~ 283 (355)
T COG0144 204 RLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV 283 (355)
T ss_pred HHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 71998348995133014311345577785998799987711335812320389999999999999999999984487988
Q ss_pred EEEEECCCCHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 9997758882429998999998579979941430022234555555556769849980447986215899996269
Q gi|254780634|r 354 LVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRHT 429 (429)
Q Consensus 354 lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~~ 429 (429)
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~p~~~~~dGFFia~l~k~~ 355 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGPLFEGLG----SELGKTRRLYPHVHGTDGFFIAKLRKKR 355 (355)
T ss_pred EEEEECCCCHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC----CCCCCEEEECCCCCCCCCEEEEEEEECC
T ss_conf 99990237500288999999985899544114455444444445----4556617867877897867999999679