HHsearch alignment for GI: 254780634 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=91.13 E-value=1.3 Score=24.00 Aligned_cols=106 Identities=24% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH----CC----CCEEHHHHCCHHHHHHHHHHH---------------HHC---CCC---
Q ss_conf 6258601346882799999986----16----881005524989999999998---------------750---288---
Q gi|254780634|r 232 SSQILDFCAGGGGKTLALSMLL----NN----KGQIHAWDNNKSRMAPIVARI---------------KRA---GIH--- 282 (429)
Q Consensus 232 g~~vLD~CAapGGKt~~la~~~----~~----~g~i~A~D~~~~Rl~~l~~~~---------------~r~---g~~--- 282 (429)
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCCE
T ss_conf 53999667689955899999999873322587438999979999999986288876676544998999633764699847
Q ss_pred --------CCEEEECCCCCCC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf --------6088215543445-7232467896275445044444223667249678999999878999999996089838
Q gi|254780634|r 283 --------NVQLHSSWESLRN-LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGY 353 (429)
Q Consensus 283 --------~v~~~~~~~~~~~-~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~ 353 (429)
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR-----------NVLI--YFd-------~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR-----------NVLI--YFD-------EETQERILRRFADSLKPGGL 236 (268)
T ss_pred EECHHHHCCCEEEECCCCCCCCCCCCCCEEEEC-----------CEEE--EEC-------HHHHHHHHHHHHHHHCCCCE
T ss_conf 987687624377535788875435898889984-----------1488--637-------89999999999997489978
Q ss_pred EEEE
Q ss_conf 9997
Q gi|254780634|r 354 LVYI 357 (429)
Q Consensus 354 lvYs 357 (429)
T Consensus 237 LflG 240 (268)
T COG1352 237 LFLG 240 (268)
T ss_pred EEEC
T ss_conf 9982