HHsearch alignment for GI: 254780634 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.97 E-value=4.3e-05 Score=54.33 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred CCCCCCC--CCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 1556542--11236666625860134688279999998616881005524989999999998750288608821554344
Q gi|254780634|r 217 DEGSQIV--SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR 294 (429)
Q Consensus 217 D~aSql~--~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~ 294 (429)
T Consensus 29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~--ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~-- 103 (198)
T COG2263 29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAI--GAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVS-- 103 (198)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH--HHHHCCCCEEEEEECCHHHHHHHHHHHHHH-CCCEEEEECCHH--
T ss_conf 899999999987388478888882788478899--998629717999936989999999888860-884699982101--
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHH
Q ss_conf 57232467896275445044444223667249678999999878999999996089838999775888242999899999
Q gi|254780634|r 295 NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFL 374 (429)
Q Consensus 295 ~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL 374 (429)
T Consensus 104 ~~~~~~dtvimNPPF---G~~~rhaDr~Fl-----------------~~Ale~s----~vVYsi---H~a~~~~f~~~~~ 156 (198)
T COG2263 104 DFRGKFDTVIMNPPF---GSQRRHADRPFL-----------------LKALEIS----DVVYSI---HKAGSRDFVEKFA 156 (198)
T ss_pred HCCCCCCEEEECCCC---CCCCCCCCHHHH-----------------HHHHHHH----HEEEEE---ECCCCHHHHHHHH
T ss_conf 147766669978997---322136888999-----------------9999740----147874---0166079999998
Q ss_pred HHCCCCEEE
Q ss_conf 857997994
Q gi|254780634|r 375 SKNPHFSID 383 (429)
Q Consensus 375 ~~~~~~~~~ 383 (429)
T Consensus 157 ~~~G~~v~~ 165 (198)
T COG2263 157 ADLGGTVTH 165 (198)
T ss_pred HHCCCEEEE
T ss_conf 854970899