HHsearch alignment for GI: 254780634 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=98.32 E-value=1.2e-05 Score=58.06 Aligned_cols=145 Identities=12% Similarity=0.196 Sum_probs=104.4
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 3126548984155654211236--6666258601346882799999986168810055249899999999987502886-
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN- 283 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~- 283 (429)
T Consensus 140 AFGTG~----HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILa--IAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~ 213 (300)
T COG2264 140 AFGTGT----HPTTSLCLEALEKLLKKGKTVLDVGCGSGILA--IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL 213 (300)
T ss_pred CCCCCC----CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHH
T ss_conf 367887----80179999999986058987998267815999--999981986689971888999999999997699602
Q ss_pred CEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 08821554344572324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 284 VQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 284 v~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
T Consensus 214 ~~~~~~~~~~~~~~~~~DvIVAN-----------------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~ 266 (300)
T COG2264 214 VQAKGFLLLEVPENGPFDVIVAN-----------------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILE 266 (300)
T ss_pred HHCCCCCCHHHCCCCCCCEEEEH-----------------------H--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECH
T ss_conf 20034563000136865689860-----------------------5--27899999999998708893699986--207
Q ss_pred HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 42999899999857997994143
Q gi|254780634|r 364 EENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
T Consensus 267 ~q~~~V~~-a~~~-~gf~v~~~~ 287 (300)
T COG2264 267 DQAESVAE-AYEQ-AGFEVVEVL 287 (300)
T ss_pred HHHHHHHH-HHHH-CCCEEEEEE
T ss_conf 58999999-9985-897686897