HHsearch alignment for GI: 254780634 and conserved domain: COG2264

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=98.32  E-value=1.2e-05  Score=58.06  Aligned_cols=145  Identities=12%  Similarity=0.196  Sum_probs=104.4

Q ss_pred             HHCCCEEEEECCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCC-
Q ss_conf             3126548984155654211236--6666258601346882799999986168810055249899999999987502886-
Q gi|254780634|r  207 TFQRGWFEIQDEGSQIVSNLTA--ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN-  283 (429)
Q Consensus       207 ~f~~G~~~VQD~aSql~~~~l~--~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-  283 (429)
T Consensus       140 AFGTG~----HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILa--IAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~  213 (300)
T COG2264         140 AFGTGT----HPTTSLCLEALEKLLKKGKTVLDVGCGSGILA--IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL  213 (300)
T ss_pred             CCCCCC----CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHH
T ss_conf             367887----80179999999986058987998267815999--999981986689971888999999999997699602


Q ss_pred             CEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf             08821554344572324678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r  284 VQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP  363 (429)
Q Consensus       284 v~~~~~~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  363 (429)
T Consensus       214 ~~~~~~~~~~~~~~~~~DvIVAN-----------------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~  266 (300)
T COG2264         214 VQAKGFLLLEVPENGPFDVIVAN-----------------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILE  266 (300)
T ss_pred             HHCCCCCCHHHCCCCCCCEEEEH-----------------------H--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECH
T ss_conf             20034563000136865689860-----------------------5--27899999999998708893699986--207


Q ss_pred             HHCHHHHHHHHHHCCCCEEEECC
Q ss_conf             42999899999857997994143
Q gi|254780634|r  364 EENIQQINYFLSKNPHFSIDSII  386 (429)
Q Consensus       364 ~Ene~vv~~fL~~~~~~~~~~~~  386 (429)
T Consensus       267 ~q~~~V~~-a~~~-~gf~v~~~~  287 (300)
T COG2264         267 DQAESVAE-AYEQ-AGFEVVEVL  287 (300)
T ss_pred             HHHHHHHH-HHHH-CCCEEEEEE
T ss_conf             58999999-9985-897686897