HHsearch alignment for GI: 254780634 and conserved domain: KOG1540
>KOG1540 consensus.
Probab=98.50 E-value=1.4e-06 Score=64.45 Aligned_cols=140 Identities=17% Similarity=0.285 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-----CEEHHHHCCHHHHHHHHHHHHHCCCCC---CEEEECCC-C
Q ss_conf 42112366666258601346882799999986168-----810055249899999999987502886---08821554-3
Q gi|254780634|r 222 IVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNK-----GQIHAWDNNKSRMAPIVARIKRAGIHN---VQLHSSWE-S 292 (429)
Q Consensus 222 l~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~-----g~i~A~D~~~~Rl~~l~~~~~r~g~~~---v~~~~~~~-~ 292 (429)
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 76621587778758983477525677798761134577776179993898999999877751597768716999477010
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHH
Q ss_conf 44572324678962754450444442236672496789999998789999999960898389997758882429998999
Q gi|254780634|r 293 LRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINY 372 (429)
Q Consensus 293 ~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~ 372 (429)
T Consensus 171 LpFdd~s~D~yTi-----afG-IRN---------------~th~~k-~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~ 225 (296)
T KOG1540 171 LPFDDDSFDAYTI-----AFG-IRN---------------VTHIQK-ALREAYRVLKPGGRFS---CLEFSKVENEPLKW 225 (296)
T ss_pred CCCCCCCCEEEEE-----ECC-EEC---------------CCCHHH-HHHHHHHHCCCCCEEE---EEECCCCCCHHHHH
T ss_conf 8999775115888-----421-114---------------787789-9999987527786799---99735454077899
Q ss_pred HHHHCCCCEEEECCC
Q ss_conf 998579979941430
Q gi|254780634|r 373 FLSKNPHFSIDSIID 387 (429)
Q Consensus 373 fL~~~~~~~~~~~~~ 387 (429)
T Consensus 226 fy~~ys-f~VlpvlG 239 (296)
T KOG1540 226 FYDQYS-FDVLPVLG 239 (296)
T ss_pred HHHHHH-HHHHCHHH
T ss_conf 997122-23211055