HHsearch alignment for GI: 254780634 and conserved domain: PRK04266

>PRK04266 fibrillarin; Provisional.
Probab=97.89  E-value=0.00083  Score=45.62  Aligned_cols=131  Identities=21%  Similarity=0.296  Sum_probs=85.9

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCC---CCCCCCCCCE
Q ss_conf             366666258601346882799999986168810055249899999999987-502886088215543---4457232467
Q gi|254780634|r  227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWES---LRNLQEHFTT  302 (429)
Q Consensus       227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~---~~~~~~~fd~  302 (429)
T Consensus        68 ~~i~~gskVLYLGAasGTTVSHvsDiV~-~G~VyAVE~spr~~RdL~~la~~R~Ni--vPIl~DAr~P~~Y~~~v~~VD~  144 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGRVYAVEFAPRVMRELLLVAEERKNI--IPILGDARKPEEYAHLVEKVDV  144 (226)
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHCC-CCEEEEEEECCHHHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf             6758998799954777984888987517-964999982707789999998508996--2575467884564420565658


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEE--EECCCCHHHCH-HHHHHHHHH--
Q ss_conf             8962754450444442236672496789999998789999999-96089838999--77588824299-989999985--
Q gi|254780634|r  303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVY--ITCSILPEENI-QQINYFLSK--  376 (429)
Q Consensus       303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvY--sTCS~~~~Ene-~vv~~fL~~--  376 (429)
T Consensus       145 i~qDvA-------------------------Q~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~  199 (226)
T PRK04266        145 IYQDVA-------------------------QPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLE  199 (226)
T ss_pred             EEEECC-------------------------CHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             996067-------------------------7428999999999860159889999974235646898999999999998


Q ss_pred             CCCCEEEEC
Q ss_conf             799799414
Q gi|254780634|r  377 NPHFSIDSI  385 (429)
Q Consensus       377 ~~~~~~~~~  385 (429)
T Consensus       200 ~~~~~~~e~  208 (226)
T PRK04266        200 EGGFEILEV  208 (226)
T ss_pred             HCCCCEEEE
T ss_conf             769966899