HHsearch alignment for GI: 254780634 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=97.89 E-value=0.00083 Score=45.62 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=85.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCC---CCCCCCCCCE
Q ss_conf 366666258601346882799999986168810055249899999999987-502886088215543---4457232467
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWES---LRNLQEHFTT 302 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~---~~~~~~~fd~ 302 (429)
T Consensus 68 ~~i~~gskVLYLGAasGTTVSHvsDiV~-~G~VyAVE~spr~~RdL~~la~~R~Ni--vPIl~DAr~P~~Y~~~v~~VD~ 144 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGRVYAVEFAPRVMRELLLVAEERKNI--IPILGDARKPEEYAHLVEKVDV 144 (226)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCC-CCEEEEEEECCHHHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf 6758998799954777984888987517-964999982707789999998508996--2575467884564420565658
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEE--EECCCCHHHCH-HHHHHHHHH--
Q ss_conf 8962754450444442236672496789999998789999999-96089838999--77588824299-989999985--
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVY--ITCSILPEENI-QQINYFLSK-- 376 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvY--sTCS~~~~Ene-~vv~~fL~~-- 376 (429)
T Consensus 145 i~qDvA-------------------------Q~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~ 199 (226)
T PRK04266 145 IYQDVA-------------------------QPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLE 199 (226)
T ss_pred EEEECC-------------------------CHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 996067-------------------------7428999999999860159889999974235646898999999999998
Q ss_pred CCCCEEEEC
Q ss_conf 799799414
Q gi|254780634|r 377 NPHFSIDSI 385 (429)
Q Consensus 377 ~~~~~~~~~ 385 (429)
T Consensus 200 ~~~~~~~e~ 208 (226)
T PRK04266 200 EGGFEILEV 208 (226)
T ss_pred HCCCCEEEE
T ss_conf 769966899