HHsearch alignment for GI: 254780634 and conserved domain: PRK04338
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional.
Probab=98.01 E-value=3.3e-05 Score=55.11 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCEEE
Q ss_conf 36666625860134688279999998616881005524989999999998750288608821554344--5723246789
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLR--NLQEHFTTVL 304 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~--~~~~~fd~vl 304 (429)
T Consensus 47 ~~~~~~~~ilDalsasGiR~iRy~~E~~-~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~ID 125 (376)
T PRK04338 47 FGPKRRKSVLDALSASGIRGIRYALETG-VEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVD 125 (376)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEE
T ss_conf 7420697687406765499999987279-987999569999999999999982998269813248999983787587786
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 62754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 305 VDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 305 ~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
T Consensus 126 lDPfGS----------------p~----------pflDsAi~~v~~~G-lL~vTaTD~a 157 (376)
T PRK04338 126 IDPFGS----------------PA----------PFLDSAIRALRRGG-LLCVTATDTA 157 (376)
T ss_pred ECCCCC----------------CC----------HHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 789999----------------20----------87999999840398-8999946861