HHsearch alignment for GI: 254780634 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=98.58 E-value=4.1e-07 Score=68.13 Aligned_cols=147 Identities=21% Similarity=0.326 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC----------
Q ss_conf 2112366666258601346882799999986168810055249899999999987502886088215543----------
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES---------- 292 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~---------- 292 (429)
T Consensus 200 a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~~---~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~ 275 (363)
T PRK05031 200 ALDATKGSKGD-LLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVR 275 (363)
T ss_pred HHHHHHCCCCC-EEEEECCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCC
T ss_conf 99976138982-8986058664269988626---8799995389999999999998699864999658999999873431
Q ss_pred ----CC---CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf ----44---57232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r 293 ----LR---NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE 365 (429)
Q Consensus 293 ----~~---~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E 365 (429)
T Consensus 276 ~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~-------------~-~~~~-------i~---~-~~---rIVYVSCnP~Tla 327 (363)
T PRK05031 276 EFRRLKGIDLKSYNFSTIFVDPPRAGLDE-------------E-TLKL-------VQ---N-YE---RILYISCNPETLK 327 (363)
T ss_pred HHHCCCCCCCCCCCCCEEEECCCCCCCCH-------------H-HHHH-------HH---C-CC---EEEEEECCHHHHH
T ss_conf 01001246644355864898999888749-------------9-9999-------83---6-89---0999928989999
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 999899999857997994143002223455555555676984998044798621589999626
Q gi|254780634|r 366 NIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 366 ne~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
T Consensus 328 R--Dl~-~L~~--~y~l~~v~--------------------~vDmFPqT~HvE--~valL~rk 363 (363)
T PRK05031 328 E--NLE-TLSQ--THKVERFA--------------------LFDQFPYTHHME--CGVLLEKK 363 (363)
T ss_pred H--HHH-HHHH--CCEEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf 9--999-9874--46588999--------------------842699997278--99999809