HHsearch alignment for GI: 254780634 and conserved domain: PRK05031

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=98.58  E-value=4.1e-07  Score=68.13  Aligned_cols=147  Identities=21%  Similarity=0.326  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC----------
Q ss_conf             2112366666258601346882799999986168810055249899999999987502886088215543----------
Q gi|254780634|r  223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES----------  292 (429)
Q Consensus       223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~----------  292 (429)
T Consensus       200 a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~~---~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~  275 (363)
T PRK05031        200 ALDATKGSKGD-LLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVR  275 (363)
T ss_pred             HHHHHHCCCCC-EEEEECCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCC
T ss_conf             99976138982-8986058664269988626---8799995389999999999998699864999658999999873431


Q ss_pred             ----CC---CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf             ----44---57232467896275445044444223667249678999999878999999996089838999775888242
Q gi|254780634|r  293 ----LR---NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEE  365 (429)
Q Consensus       293 ----~~---~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E  365 (429)
T Consensus       276 ~~~~l~~~~~~~~~~d~vvvDPPR~Gl~~-------------~-~~~~-------i~---~-~~---rIVYVSCnP~Tla  327 (363)
T PRK05031        276 EFRRLKGIDLKSYNFSTIFVDPPRAGLDE-------------E-TLKL-------VQ---N-YE---RILYISCNPETLK  327 (363)
T ss_pred             HHHCCCCCCCCCCCCCEEEECCCCCCCCH-------------H-HHHH-------HH---C-CC---EEEEEECCHHHHH
T ss_conf             01001246644355864898999888749-------------9-9999-------83---6-89---0999928989999


Q ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf             999899999857997994143002223455555555676984998044798621589999626
Q gi|254780634|r  366 NIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH  428 (429)
Q Consensus       366 ne~vv~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~  428 (429)
T Consensus       328 R--Dl~-~L~~--~y~l~~v~--------------------~vDmFPqT~HvE--~valL~rk  363 (363)
T PRK05031        328 E--NLE-TLSQ--THKVERFA--------------------LFDQFPYTHHME--CGVLLEKK  363 (363)
T ss_pred             H--HHH-HHHH--CCEEEEEE--------------------EECCCCCCCCEE--EEEEEEEC
T ss_conf             9--999-9874--46588999--------------------842699997278--99999809