HHsearch alignment for GI: 254780634 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=100.00 E-value=0 Score=754.40 Aligned_cols=396 Identities=26% Similarity=0.389 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------HH-----
Q ss_conf 689999999999999569978999999998685889557999999999999758999997056896-------79-----
Q gi|254780634|r 4 GGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDDP-------ES----- 71 (429)
Q Consensus 4 ~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~~-------r~----- 71 (429)
T Consensus 5 n~R~-~A~~~L~~v~~~g~~~~~~L~~~~~---~l~~~Dr~l~~elvyG~lR~~~~LD~il~~~~~~p~~~~~~~v~~lL 80 (428)
T PRK10901 5 NLRS-IAAQAVEQVVEQGQSLSNVLPPLQQ---KVSDKDKALLQELCFGVLRTLSQLEWLINKLMARPMTGKQRTVHYLI 80 (428)
T ss_pred CHHH-HHHHHHHHHHHCCCCHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 4999-9999999999869929999999870---59998899999999999976899999999983799854347999999
Q ss_pred --HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHC---CCCC-----CCCCHHHHCCCHHHHHHHHHHCCH
Q ss_conf --9999999743889899999885433034332-0467754420---3433-----679123508998899999985744
Q gi|254780634|r 72 --LVYAVIMKDWDIPWEKMLSMLKEDLFSPPLP-KESVIKSFHS---RQLE-----NAPLHIQGNIPQWLQSSFQSYFKD 140 (429)
Q Consensus 72 --~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-----~~~~~i~~s~P~WL~~~~~~~~ge 140 (429)
T Consensus 81 rlg~yQl--l~~~iP~~AaVne~Ve~ak~~~~~~~~glVNAVLR~~~r~~~~~~~~~~~~~~~~s~P~Wlv~~~~~~~~~ 158 (428)
T PRK10901 81 MVGLYQL--LYTRIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYPE 158 (428)
T ss_pred HHHHHHH--HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999--61799951479899999986166304678899999986043211033246212430987899999997589
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEEEECC
Q ss_conf 899999986289861112477889989999989871887545--475431134566544461011096312654898415
Q gi|254780634|r 141 TWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSS--ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDE 218 (429)
Q Consensus 141 ~~~~~l~a~~~~~pl~iRvN~~k~~~~~~~~~L~~~gi~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~~VQD~ 218 (429)
T Consensus 159 ~~~~ll~a~n~~pp~~lRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~l~~~~------~i~~l~~f~~G~~~VQD~ 232 (428)
T PRK10901 159 QWQSIVEANNQRPPMWLRVNRTHHSRDEWLALLEEAGMKGFPHPDYPDAVRLETPA------PVHALPGFEEGWVTVQDA 232 (428)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCC------CHHHCCCCCCCEEEEECH
T ss_conf 99999996089998378835776999999999985899735268899769987999------811081001681898172
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC---
Q ss_conf 56542112366666258601346882799999986168810055249899999999987502886088215543445---
Q gi|254780634|r 219 GSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRN--- 295 (429)
Q Consensus 219 aSql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~--- 295 (429)
T Consensus 233 aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~~~~~ 310 (428)
T PRK10901 233 SAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWC 310 (428)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHC
T ss_conf 76789986498889879871688766899999964-5892899969888999999999975997-399977655723313
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHH
Q ss_conf 72324678962754450444442236672496789999998789999999960898389997758882429998999998
Q gi|254780634|r 296 LQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS 375 (429)
Q Consensus 296 ~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~ 375 (429)
T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~ 390 (428)
T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQ 390 (428)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 44567879975898887244468542112899999999999999999999866889889999899995778999999998
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 57997994143002223455555555676984998044798621589999626
Q gi|254780634|r 376 KNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKRH 428 (429)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 428 (429)
T Consensus 391 ~~~d~~l~~~~~---------------~~~~~~~~~P~~~~~DGFf~a~L~kk 428 (428)
T PRK10901 391 RTPDAELCETGT---------------PEQPGKQNLPGAEEGDGFFYAKLIKK 428 (428)
T ss_pred HCCCCEECCCCC---------------CCCCCEEECCCCCCCCCEEEEEEEEC
T ss_conf 599978606778---------------89998788999999873799999849