HHsearch alignment for GI: 254780634 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=98.21 E-value=4.3e-06 Score=61.17 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCCCCEEEECC
Q ss_conf 66625860134688279999998616881005524989999999998750288608821554--3445723246789627
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWE--SLRNLQEHFTTVLVDA 307 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~--~~~~~~~~fd~vl~Da 307 (429)
T Consensus 51 i~~~~vLDLFAGSGalGlEA--LSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DP 128 (198)
T PRK10909 51 IVDARCLDCFAGSGALGLEA--LSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 128 (198)
T ss_pred CCCCEEEECCCCCCHHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECC
T ss_conf 29987998277746889999--9879978999978999999999999984888679995569998625599521899899
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 544504444422366724967899999987899999999608983899977
Q gi|254780634|r 308 PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 308 PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
T Consensus 129 PY~-~~~------------------~~~~l~~l~~--~~~L~~~gliiiE~ 158 (198)
T PRK10909 129 PFR-KGL------------------LEETINLLEQ--NGWLADDALIYVES 158 (198)
T ss_pred CCC-CCH------------------HHHHHHHHHH--CCCCCCCCEEEEEE
T ss_conf 976-555------------------9999999998--88918996999995