HHsearch alignment for GI: 254780634 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=97.89 E-value=3.7e-05 Score=54.81 Aligned_cols=159 Identities=13% Similarity=0.247 Sum_probs=108.0
Q ss_pred CCCEEEEECCCCCCCCCCC---------C----------CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHH
Q ss_conf 2654898415565421123---------6----------66662586013468827999999861688100552498999
Q gi|254780634|r 209 QRGWFEIQDEGSQIVSNLT---------A----------ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRM 269 (429)
Q Consensus 209 ~~G~~~VQD~aSql~~~~l---------~----------~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl 269 (429)
T Consensus 511 ~~~~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa-~-gGA~~t~sVD~S~tyl 588 (716)
T PRK11783 511 KGEFLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAA-L-GGAKSTTTVDMSNTYL 588 (716)
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHH-H-CCCCEEEEECCCHHHH
T ss_conf 7876999957868999777202267454437999999997078846431222561021335-2-7961227862708799
Q ss_pred HHHHHHHHHCCCCC--CEEEECC--CCCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987502886--0882155--4344572324678962754-45044444223667249678999999878999999
Q gi|254780634|r 270 APIVARIKRAGIHN--VQLHSSW--ESLRNLQEHFTTVLVDAPC-SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEES 344 (429)
Q Consensus 270 ~~l~~~~~r~g~~~--v~~~~~~--~~~~~~~~~fd~vl~DaPC-Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a 344 (429)
T Consensus 589 ~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPtFSnSk~------------m~~~~dvqrDh~~li~~~ 656 (716)
T PRK11783 589 EWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPTFSNSKR------------MEDSFDVQRDHVALIKLA 656 (716)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCC------------CCCCCCCCCCHHHHHHHH
T ss_conf 99999998549996347389640899998577766789988999987666------------788632203099999999
Q ss_pred HHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECC
Q ss_conf 996089838999775888242999899999857997994143
Q gi|254780634|r 345 AQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII 386 (429)
Q Consensus 345 ~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~ 386 (429)
T Consensus 657 ~~~L~~~G~l~FS~N~r~F~ld~~~l~~-----~~~~~~dit 693 (716)
T PRK11783 657 MRLLRPGGTLYFSNNKRGFKMDEEGLAK-----LGLAVEEIT 693 (716)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHH-----CCCEEEECC
T ss_conf 9860899689996288763428767521-----596068775