HHsearch alignment for GI: 254780634 and conserved domain: PRK11783

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=97.89  E-value=3.7e-05  Score=54.81  Aligned_cols=159  Identities=13%  Similarity=0.247  Sum_probs=108.0

Q ss_pred             CCCEEEEECCCCCCCCCCC---------C----------CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHH
Q ss_conf             2654898415565421123---------6----------66662586013468827999999861688100552498999
Q gi|254780634|r  209 QRGWFEIQDEGSQIVSNLT---------A----------ITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRM  269 (429)
Q Consensus       209 ~~G~~~VQD~aSql~~~~l---------~----------~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl  269 (429)
T Consensus       511 ~~~~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa-~-gGA~~t~sVD~S~tyl  588 (716)
T PRK11783        511 KGEFLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAA-L-GGAKSTTTVDMSNTYL  588 (716)
T ss_pred             CCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHH-H-CCCCEEEEECCCHHHH
T ss_conf             7876999957868999777202267454437999999997078846431222561021335-2-7961227862708799


Q ss_pred             HHHHHHHHHCCCCC--CEEEECC--CCCCCCCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999987502886--0882155--4344572324678962754-45044444223667249678999999878999999
Q gi|254780634|r  270 APIVARIKRAGIHN--VQLHSSW--ESLRNLQEHFTTVLVDAPC-SGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEES  344 (429)
Q Consensus       270 ~~l~~~~~r~g~~~--v~~~~~~--~~~~~~~~~fd~vl~DaPC-Sg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a  344 (429)
T Consensus       589 ~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPtFSnSk~------------m~~~~dvqrDh~~li~~~  656 (716)
T PRK11783        589 EWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPTFSNSKR------------MEDSFDVQRDHVALIKLA  656 (716)
T ss_pred             HHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCC------------CCCCCCCCCCHHHHHHHH
T ss_conf             99999998549996347389640899998577766789988999987666------------788632203099999999


Q ss_pred             HHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEECC
Q ss_conf             996089838999775888242999899999857997994143
Q gi|254780634|r  345 AQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII  386 (429)
Q Consensus       345 ~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~~  386 (429)
T Consensus       657 ~~~L~~~G~l~FS~N~r~F~ld~~~l~~-----~~~~~~dit  693 (716)
T PRK11783        657 MRLLRPGGTLYFSNNKRGFKMDEEGLAK-----LGLAVEEIT  693 (716)
T ss_pred             HHHCCCCCEEEEECCCCCCCCCHHHHHH-----CCCEEEECC
T ss_conf             9860899689996288763428767521-----596068775