HHsearch alignment for GI: 254780634 and conserved domain: PTZ00146
>PTZ00146 fibrillarin; Provisional.
Probab=97.82 E-value=0.00062 Score=46.48 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCE-EEECCCCCC----CCCCCCC
Q ss_conf 36666625860134688279999998616881005524989999999998750288608-821554344----5723246
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLR----NLQEHFT 301 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~-~~~~~~~~~----~~~~~fd 301 (429)
T Consensus 131 i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R--~NIvPIle-DAr~P~kYr~lV~~VD 207 (296)
T PTZ00146 131 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR--TNIVPIIE-DARYPQKYRMLVPMVD 207 (296)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC--CCCEEEEC-CCCCHHHHHHHCCCCC
T ss_conf 44379998998514679865566650178861999970646688999997227--98335777-7897467554245555
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEE---ECCCCHHHCHHHHHHHHHHC
Q ss_conf 7896275445044444223667249678999999878999-9999960898389997---75888242999899999857
Q gi|254780634|r 302 TVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKIL-EESAQFVRPEGYLVYI---TCSILPEENIQQINYFLSKN 377 (429)
Q Consensus 302 ~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL-~~a~~~lk~gG~lvYs---TCS~~~~Ene~vv~~fL~~~ 377 (429)
T Consensus 208 vIf~DVAQp-------------------------dQarI~~~Na~~FLK~gG~~~i~IKArsIDst~~p~~VF~~Ev~kL 262 (296)
T PTZ00146 208 CIFADVAQP-------------------------DQARIVALNAQHFLKNGGHFVISIKANCIDSTADPEVVFASEVQKL 262 (296)
T ss_pred EEEECCCCH-------------------------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 899617876-------------------------5899999999985316988999997266325679899999999999
Q ss_pred --CCCEEEEC
Q ss_conf --99799414
Q gi|254780634|r 378 --PHFSIDSI 385 (429)
Q Consensus 378 --~~~~~~~~ 385 (429)
T Consensus 263 ~~~~f~~~e~ 272 (296)
T PTZ00146 263 KKEGLKPKEQ 272 (296)
T ss_pred HHCCCCEEEE
T ss_conf 8728963688