HHsearch alignment for GI: 254780634 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=97.33 E-value=0.0005 Score=47.09 Aligned_cols=146 Identities=13% Similarity=0.203 Sum_probs=111.5
Q ss_pred HHCCCEEEEECCCCCCCCCCCC--CCCC--CEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 3126548984155654211236--6666--25860134688279999998616881005524989999999998750288
Q gi|254780634|r 207 TFQRGWFEIQDEGSQIVSNLTA--ITNS--SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIH 282 (429)
Q Consensus 207 ~f~~G~~~VQD~aSql~~~~l~--~~~g--~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 282 (429)
T Consensus 172 AFGTGt----H~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~--IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~ 245 (330)
T TIGR00406 172 AFGTGT----HPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILS--IAALKLGAAKVVGIDIDPLAVESARKNAELNQVS 245 (330)
T ss_pred CCCCCC----CHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH--HHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 568897----4578999998740147776654787126717899--9999751231122137728999999768745886
Q ss_pred CCE-EEEC---CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 608-8215---543445723246789627544504444422366724967899999987899999999608983899977
Q gi|254780634|r 283 NVQ-LHSS---WESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 (429)
Q Consensus 283 ~v~-~~~~---~~~~~~~~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsT 358 (429)
T Consensus 246 ~~~~~~~~~~vPe~~~~~e~~~DViVAN-----------------------i--LA~vi~~L~p~~~~L~~~~G~lilSG 300 (330)
T TIGR00406 246 DRLQVKLENSVPELEQPIEGKADVIVAN-----------------------I--LAEVIKELYPQFSRLVKPGGHLILSG 300 (330)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEC-----------------------C--HHHHHHHHHHHHHHHCCCCCCEEEHH
T ss_conf 4576432057875345322566757880-----------------------0--24578764135513106899657413
Q ss_pred CCCCHHHCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 58882429998999998579979941430
Q gi|254780634|r 359 CSILPEENIQQINYFLSKNPHFSIDSIID 387 (429)
Q Consensus 359 CS~~~~Ene~vv~~fL~~~~~~~~~~~~~ 387 (429)
T Consensus 301 ---Il~~~~~sV~~ay~q~-GF~~~~~~~ 325 (330)
T TIGR00406 301 ---ILETQAQSVCEAYEQA-GFTVVEILK 325 (330)
T ss_pred ---HHHHHHHHHHHHHHCC-CCEEHHHHH
T ss_conf ---4764799999998557-946343464