HHsearch alignment for GI: 254780634 and conserved domain: TIGR00536
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.94 E-value=0.05 Score=33.50 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHC--CCCEEHHHHCCHHHHHHHHHHHHHCCCCC-CEEEECCCCC--CCCCC-CC
Q ss_conf 66666-2586013468827999999861--68810055249899999999987502886-0882155434--45723-24
Q gi|254780634|r 228 AITNS-SQILDFCAGGGGKTLALSMLLN--NKGQIHAWDNNKSRMAPIVARIKRAGIHN-VQLHSSWESL--RNLQE-HF 300 (429)
Q Consensus 228 ~~~~g-~~vLD~CAapGGKt~~la~~~~--~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~~~~~--~~~~~-~f 300 (429)
T Consensus 122 ~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 200 (311)
T TIGR00536 122 SQPPLPLHILDLGTGSGCIALALAYEFPPCN-AEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKL 200 (311)
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHCCCCCC-CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCE
T ss_conf 1477650111014563156665543046666-226641122367888887677643201200101124443320366522
Q ss_pred CEEEECCCCCCCHHHHHH-HHHHHHC---CHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHH
Q ss_conf 678962754450444442-2366724---9678-99999987899999999608983899977588824299989
Q gi|254780634|r 301 TTVLVDAPCSGTGTWRRR-PDIKWRL---SQKN-LIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQI 370 (429)
Q Consensus 301 d~vl~DaPCSg~G~~rr~-Pe~~w~~---~~~~-~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv 370 (429)
T Consensus 201 ~~~~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 275 (311)
T TIGR00536 201 DLLVSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKILKRILELAPDYLKPGGFLLLEIGNWQLGLLKELL 275 (311)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 366458865441345553112343200345430474007899999875454305675589961622356778766