HHsearch alignment for GI: 254780634 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.41 E-value=0.00079 Score=45.76 Aligned_cols=123 Identities=23% Similarity=0.399 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEE-----------ECCC
Q ss_conf 21123666662586013468827999999861688100552498999999999875028860882-----------1554
Q gi|254780634|r 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH-----------SSWE 291 (429)
Q Consensus 223 ~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-----------~~~~ 291 (429)
T Consensus 195 A~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~---rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R 271 (361)
T TIGR02143 195 ALEVTQNSKGMDLLELYCGNGNFSLALAQNFE---RVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVR 271 (361)
T ss_pred HHHHHCCCCCCCCCEEECCCCCCHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC
T ss_conf 99983588887201000267531044565333---455430240247999999871798831010232799999860377
Q ss_pred CCCCCC--C------CCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 344572--3------24678962754450444442236672496789999998789999999960898389997758882
Q gi|254780634|r 292 SLRNLQ--E------HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILP 363 (429)
Q Consensus 292 ~~~~~~--~------~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 363 (429)
T Consensus 272 ~F~RL~d~gIdL~~Y~f~tiFVDPPRaGl-------------D~---------------~t~~Lv~~y~rIlYISC--NP 321 (361)
T TIGR02143 272 EFRRLKDGGIDLKSYNFNTIFVDPPRAGL-------------DP---------------DTVKLVQKYERILYISC--NP 321 (361)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCC-------------CH---------------HHHHHHHHCCCEEEEEC--CH
T ss_conf 65465668863342025602677988888-------------98---------------99999962598799846--96
Q ss_pred HHCHHHHHHHHHHCC
Q ss_conf 429998999998579
Q gi|254780634|r 364 EENIQQINYFLSKNP 378 (429)
Q Consensus 364 ~Ene~vv~~fL~~~~ 378 (429)
T Consensus 322 ~TL~~NL~~L~~TH~ 336 (361)
T TIGR02143 322 ETLKENLEQLSETHR 336 (361)
T ss_pred HHHHHHHHHHHHCCE
T ss_conf 899999998860653