HHsearch alignment for GI: 254780634 and conserved domain: TIGR03201
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.33 E-value=0.39 Score=27.43 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC----------
Q ss_conf 3666662586013468827999999861688100552498999999999875028860882155434457----------
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNL---------- 296 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~---------- 296 (429)
T Consensus 162 ~~v~~g~~V~V~G~G~iGl~a~~~ak~~G-a~Vi~vd~~~~rle~a~----~~Ga~~~-i~~~~~~~~~~~~~~~~~~~~ 235 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMK----GFGADLT-LNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH----HCCCCEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 17899988999897489999999999859-97999949999999999----6499899-878767789999999754145
Q ss_pred ---CCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHH
Q ss_conf ---23246789627544504444422366724967899999987899999999608983899977588824299989999
Q gi|254780634|r 297 ---QEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 (429)
Q Consensus 297 ---~~~fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~f 373 (429)
T Consensus 236 ~G~~~~~~-~v~e--~~G~~-------------------------~~~~~a~~~~~~gG~iv~vG--~~~~~~~~~~~~l 285 (349)
T TIGR03201 236 RGLRSTGW-KIFE--CSGSK-------------------------PGQESALSLLSHGGTLVVVG--YTMAKTEYRLSNL 285 (349)
T ss_pred CCCCCCCC-EEEE--ECCCH-------------------------HHHHHHHHHCCCCCEEEEEC--CCCCCCCCCHHHH
T ss_conf 67565563-6998--24888-------------------------99999999735897999975--0599875548998
Q ss_pred HHH
Q ss_conf 985
Q gi|254780634|r 374 LSK 376 (429)
Q Consensus 374 L~~ 376 (429)
T Consensus 286 ~~~ 288 (349)
T TIGR03201 286 MAF 288 (349)
T ss_pred HHC
T ss_conf 736