HHsearch alignment for GI: 254780634 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.67 E-value=4.1e-07 Score=68.09 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=107.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 66258601346882799999986168810055249899999999987502886088215543445723246789627544
Q gi|254780634|r 231 NSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCS 310 (429)
Q Consensus 231 ~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~fd~vl~DaPCS 310 (429)
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~-~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI 165 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCC
T ss_conf 898699955671699999999679-9789999898799999999999809982686513143215689866899789988
Q ss_pred CCHHHHH-HHHHHHHCCHHHH----HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEEC
Q ss_conf 5044444-2236672496789----9999987899999999608983899977588824299989999985799799414
Q gi|254780634|r 311 GTGTWRR-RPDIKWRLSQKNL----IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSI 385 (429)
Q Consensus 311 g~G~~rr-~Pe~~w~~~~~~~----~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~~~~~~~ 385 (429)
T Consensus 166 ~~~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~~-q~~~v~~l~~~~-gf~~i~~ 239 (251)
T TIGR03534 166 PEADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGYD-QGEAVRALFEAA-GFADVET 239 (251)
T ss_pred CHHHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECHH-HHHHHHHHHHHC-CCCEEEE
T ss_conf 745666328601026-729997179846999999999999853679889999---6837-899999999968-9970688
Q ss_pred CCCC
Q ss_conf 3002
Q gi|254780634|r 386 IDDW 389 (429)
Q Consensus 386 ~~~~ 389 (429)
T Consensus 240 ~kDl 243 (251)
T TIGR03534 240 RKDL 243 (251)
T ss_pred EECC
T ss_conf 5078