HHsearch alignment for GI: 254780634 and conserved domain: pfam01029
>pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.
Probab=98.41 E-value=5.3e-06 Score=60.54 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---C--------HHH
Q ss_conf 68999999999999956997899999999868588955799999999999975899999705689---6--------799
Q gi|254780634|r 4 GGQIAAAIEILKDIRTHKKPITNSLKDWGMSHRFAGSSDRASISNIVHDVLRKYLSSAYIMDSDD---P--------ESL 72 (429)
Q Consensus 4 ~aR~~AA~eiL~~v~~~~~~ad~~L~~~~~~~r~lgs~DR~~i~~lvyg~lR~~~~ld~il~~~~---~--------r~~ 72 (429)
T Consensus 2 ~aR~-~a~q~L~~~~~~~~~~~~~l~~~~~-~-~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~~~~~~~~l~~~~~~i 78 (126)
T pfam01029 2 NARE-LALQALYAVEERGASLNELLDKLLE-A-DLDERDRAFATELVYGVLRNLEELDALIAKLLENWPLERLDPVDRAI 78 (126)
T ss_pred HHHH-HHHHHHHHHHHCCCCHHHHHHHHHH-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
T ss_conf 4999-9999999998609899999999987-1-89889999999999999998999999999885599966659999999
Q ss_pred HHHHHH--H-HCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHH
Q ss_conf 999999--7-4388989999988543303-4332046775442
Q gi|254780634|r 73 VYAVIM--K-DWDIPWEKMLSMLKEDLFS-PPLPKESVIKSFH 111 (429)
Q Consensus 73 ~~~~l~--~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 111 (429)
T Consensus 79 Lr~a~~El~~~~~~p~~~~InE~v~lak~~~~~~~~~fvNaVL 121 (126)
T pfam01029 79 LRLAAYELLYLDDIPPHVAINEAVELAKKFGGEKSAGFVNGVL 121 (126)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999985789982445899999999877886430289998