HHsearch alignment for GI: 254780634 and conserved domain: pfam01269

>pfam01269 Fibrillarin Fibrillarin.
Probab=98.17  E-value=0.00019  Score=50.02  Aligned_cols=132  Identities=21%  Similarity=0.239  Sum_probs=88.3

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCCC---CCCCCCCCE
Q ss_conf             366666258601346882799999986168810055249899999999987-5028860882155434---457232467
Q gi|254780634|r  227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWESL---RNLQEHFTT  302 (429)
Q Consensus       227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~~---~~~~~~fd~  302 (429)
T Consensus        69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R~NI--vPIl~DAr~P~~Y~~lv~~VD~  146 (229)
T pfam01269        69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNI--VPILEDARHPQKYRMLVEMVDV  146 (229)
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf             68589987999447779857678872288953999971735578999997427994--4576677875676542556668


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEE--CCCCH-HHCHHHHHHHHHH--
Q ss_conf             8962754450444442236672496789999998789999999-9608983899977--58882-4299989999985--
Q gi|254780634|r  303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVYIT--CSILP-EENIQQINYFLSK--  376 (429)
Q Consensus       303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvYsT--CS~~~-~Ene~vv~~fL~~--  376 (429)
T Consensus       147 ifqDvaQ~-------------------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~  201 (229)
T pfam01269       147 IFADVAQP-------------------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK  201 (229)
T ss_pred             EEECCCCH-------------------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             99627877-------------------------78999999999861269889999971342167898999999999998


Q ss_pred             CCCCEEEEC
Q ss_conf             799799414
Q gi|254780634|r  377 NPHFSIDSI  385 (429)
Q Consensus       377 ~~~~~~~~~  385 (429)
T Consensus       202 ~~~~~~~e~  210 (229)
T pfam01269       202 EEGFKPKEQ  210 (229)
T ss_pred             HCCCCEEEE
T ss_conf             769965899