HHsearch alignment for GI: 254780634 and conserved domain: pfam01269
>pfam01269 Fibrillarin Fibrillarin.
Probab=98.17 E-value=0.00019 Score=50.02 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=88.3
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHH-HCCCCCCEEEECCCCC---CCCCCCCCE
Q ss_conf 366666258601346882799999986168810055249899999999987-5028860882155434---457232467
Q gi|254780634|r 227 TAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIK-RAGIHNVQLHSSWESL---RNLQEHFTT 302 (429)
Q Consensus 227 l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~-r~g~~~v~~~~~~~~~---~~~~~~fd~ 302 (429)
T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R~NI--vPIl~DAr~P~~Y~~lv~~VD~ 146 (229)
T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNI--VPILEDARHPQKYRMLVEMVDV 146 (229)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC--EEEECCCCCHHHHHHHCCCCCE
T ss_conf 68589987999447779857678872288953999971735578999997427994--4576677875676542556668
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEE--CCCCH-HHCHHHHHHHHHH--
Q ss_conf 8962754450444442236672496789999998789999999-9608983899977--58882-4299989999985--
Q gi|254780634|r 303 VLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA-QFVRPEGYLVYIT--CSILP-EENIQQINYFLSK-- 376 (429)
Q Consensus 303 vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~-~~lk~gG~lvYsT--CS~~~-~Ene~vv~~fL~~-- 376 (429)
T Consensus 147 ifqDvaQ~-------------------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~ 201 (229)
T pfam01269 147 IFADVAQP-------------------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK 201 (229)
T ss_pred EEECCCCH-------------------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99627877-------------------------78999999999861269889999971342167898999999999998
Q ss_pred CCCCEEEEC
Q ss_conf 799799414
Q gi|254780634|r 377 NPHFSIDSI 385 (429)
Q Consensus 377 ~~~~~~~~~ 385 (429)
T Consensus 202 ~~~~~~~e~ 210 (229)
T pfam01269 202 EEGFKPKEQ 210 (229)
T ss_pred HCCCCEEEE
T ss_conf 769965899