HHsearch alignment for GI: 254780634 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.40 E-value=8.4e-06 Score=59.17 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--------CCCCCCCCC
Q ss_conf 666258601346882799999986168810055249899999999987502886088215543--------445723246
Q gi|254780634|r 230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--------LRNLQEHFT 301 (429)
Q Consensus 230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--------~~~~~~~fd 301 (429)
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~-~~~v~~vDl~~~~-----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~D 87 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGA-KGRVVAVDLGPMK-----------PIQGVTFLRGDITDPETLEKLLELLPGKVD 87 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 7999999968999769999998566-8739999734465-----------677845651676687899999997399846
Q ss_pred EEEECC--CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf 789627--544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r 302 TVLVDA--PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH 379 (429)
Q Consensus 302 ~vl~Da--PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~ 379 (429)
T Consensus 88 lV~sD~a~~~~g~----~~~------d~~~s~---~L~~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~~l~~~F~~ 153 (176)
T pfam01728 88 LVLCDGAPNVSGL----ENT------DSFISL---RLVLAALLLALEVLRPGGNFVVKLFKGFE-FSVELLYKLKKGFEK 153 (176)
T ss_pred EEEECCCCCCCCC----CCH------HHHHHH---HHHHHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHHHHHHCCCE
T ss_conf 8973366565677----334------789999---99999999999982437639999982787-649999999831788
Q ss_pred CEEE
Q ss_conf 7994
Q gi|254780634|r 380 FSID 383 (429)
Q Consensus 380 ~~~~ 383 (429)
T Consensus 154 v~~~ 157 (176)
T pfam01728 154 VGIF 157 (176)
T ss_pred EEEE
T ss_conf 9998