HHsearch alignment for GI: 254780634 and conserved domain: pfam01728

>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.40  E-value=8.4e-06  Score=59.17  Aligned_cols=128  Identities=20%  Similarity=0.149  Sum_probs=75.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCC--------CCCCCCCCC
Q ss_conf             666258601346882799999986168810055249899999999987502886088215543--------445723246
Q gi|254780634|r  230 TNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWES--------LRNLQEHFT  301 (429)
Q Consensus       230 ~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~--------~~~~~~~fd  301 (429)
T Consensus        20 ~~~~~vlDLg~aPGgwsq~~~~~~~-~~~v~~vDl~~~~-----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~D   87 (176)
T pfam01728        20 PGGKTVLDLGAAPGGFSQVLLERGA-KGRVVAVDLGPMK-----------PIQGVTFLRGDITDPETLEKLLELLPGKVD   87 (176)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCCCC-----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             7999999968999769999998566-8739999734465-----------677845651676687899999997399846


Q ss_pred             EEEECC--CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC
Q ss_conf             789627--544504444422366724967899999987899999999608983899977588824299989999985799
Q gi|254780634|r  302 TVLVDA--PCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH  379 (429)
Q Consensus       302 ~vl~Da--PCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~Ene~vv~~fL~~~~~  379 (429)
T Consensus        88 lV~sD~a~~~~g~----~~~------d~~~s~---~L~~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~~l~~~F~~  153 (176)
T pfam01728        88 LVLCDGAPNVSGL----ENT------DSFISL---RLVLAALLLALEVLRPGGNFVVKLFKGFE-FSVELLYKLKKGFEK  153 (176)
T ss_pred             EEEECCCCCCCCC----CCH------HHHHHH---HHHHHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHHHHHHCCCE
T ss_conf             8973366565677----334------789999---99999999999982437639999982787-649999999831788


Q ss_pred             CEEE
Q ss_conf             7994
Q gi|254780634|r  380 FSID  383 (429)
Q Consensus       380 ~~~~  383 (429)
T Consensus       154 v~~~  157 (176)
T pfam01728       154 VGIF  157 (176)
T ss_pred             EEEE
T ss_conf             9998