HHsearch alignment for GI: 254780634 and conserved domain: pfam05401

>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.91  E-value=0.00011  Score=51.47  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf             65421123666662586013468827999999861688100552498999999999875028860882155434457232
Q gi|254780634|r  220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEH  299 (429)
Q Consensus       220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~  299 (429)
T Consensus        32 ~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~wP~~~  106 (201)
T pfam05401        32 TQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFSTNEL  106 (201)
T ss_pred             HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCC
T ss_conf             99999867834330020435662487899999874---67321362999999999855--79982898256666599888


Q ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4678962754450444442236672496789999998789999999960898389997
Q gi|254780634|r  300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI  357 (429)
Q Consensus       300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs  357 (429)
T Consensus       107 FDLIV~S-------------EVlYYL--~d~a~l----r~~~~~~v~~LaP~G~Lvfg  145 (201)
T pfam05401       107 FDLIVVA-------------EVLYYL--GDVAEM----RGAVRNLVSMLAPDGQLVFG  145 (201)
T ss_pred             EEEEEEE-------------HHHHHH--CCHHHH----HHHHHHHHHHHCCCCEEEEE
T ss_conf             6279751-------------477861--879999----99999999971899659973