HHsearch alignment for GI: 254780634 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.91 E-value=0.00011 Score=51.47 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 65421123666662586013468827999999861688100552498999999999875028860882155434457232
Q gi|254780634|r 220 SQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLHSSWESLRNLQEH 299 (429)
Q Consensus 220 Sql~~~~l~~~~g~~vLD~CAapGGKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~~~~~~~~~~~ 299 (429)
T Consensus 32 ~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~wP~~~ 106 (201)
T pfam05401 32 TQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFSTNEL 106 (201)
T ss_pred HHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCC
T ss_conf 99999867834330020435662487899999874---67321362999999999855--79982898256666599888
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4678962754450444442236672496789999998789999999960898389997
Q gi|254780634|r 300 FTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYI 357 (429)
Q Consensus 300 fd~vl~DaPCSg~G~~rr~Pe~~w~~~~~~~~~~~~lQ~~iL~~a~~~lk~gG~lvYs 357 (429)
T Consensus 107 FDLIV~S-------------EVlYYL--~d~a~l----r~~~~~~v~~LaP~G~Lvfg 145 (201)
T pfam05401 107 FDLIVVA-------------EVLYYL--GDVAEM----RGAVRNLVSMLAPDGQLVFG 145 (201)
T ss_pred EEEEEEE-------------HHHHHH--CCHHHH----HHHHHHHHHHHCCCCEEEEE
T ss_conf 6279751-------------477861--879999----99999999971899659973