RPSBLAST alignment for GI: 254780634 and conserved domain: TIGR00563

>gnl|CDD|161931 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Length = 426

 Score =  157 bits (399), Expect = 4e-39
 Identities = 95/309 (30%), Positives = 137/309 (44%), Gaps = 29/309 (9%)

Query: 127 PQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGV----HHSS 182
           P+WL    Q  +   W    ++ + R P+ LR N  K +R +    L   G+    H  +
Sbjct: 138 PEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLA 197

Query: 183 ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGG 242
                L  PA      LP       F+ GW  +QD  +Q V+   A  N   ILD CA  
Sbjct: 198 PDAVRLETPAAVHA--LPG------FEEGWVTVQDASAQWVATWLAPQNEETILDACAAP 249

Query: 243 GGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG----IHNVQLHSSWESLRNLQE 298
           GGKT  +  L   + Q+ A D ++ R+  +   +KR G               S     E
Sbjct: 250 GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308

Query: 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358
            F  +L+DAPCS TG  RR PDIKW    +++ E  E Q +IL+     ++  G LVY T
Sbjct: 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368

Query: 359 CSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTD 418
           CS+LPEEN +QI  FL ++P F  +            K      + +G   + P     D
Sbjct: 369 CSVLPEENSEQIKAFLQEHPDFPFE------------KTGTPEQVRDGGLQILPHAEEGD 416

Query: 419 GFFFCRLKR 427
           GFF+ +L +
Sbjct: 417 GFFYAKLIK 425