RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] (429 letters) >gnl|CDD|184895 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional. Length = 444 Score = 218 bits (558), Expect = 2e-57 Identities = 99/313 (31%), Positives = 158/313 (50%), Gaps = 18/313 (5%) Query: 120 LHIQGNIPQWLQSSFQSYF-KDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNL--CHY 176 L I+ + P WL + + ++ K +SL+ +R NTLK++ +L + L Y Sbjct: 143 LSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGY 202 Query: 177 GVHHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQIL 236 V S +S L I KG N+ F+ G IQDE S +V+ +L Sbjct: 203 EVEESLLSPEALVI--EKG-----NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVL 255 Query: 237 DFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV--QLHSSWESLR 294 D CA GGKT ++ LL N G++ A D ++ ++ I KR G+ N+ + + + Sbjct: 256 DACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE 315 Query: 295 NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL 354 E F +LVDAPCSG G RR+PDIK+ +++++ E Q +ILE AQ+++ G L Sbjct: 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 Query: 355 VYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFL 414 VY TC+I EEN + I FL ++P F + + ++ D + ++G + P Sbjct: 376 VYSTCTIEKEENEEVIEAFLEEHPEFELVPL---QHEKPDELVYEV---KDGYLQILPND 429 Query: 415 TNTDGFFFCRLKR 427 TDGFF +L++ Sbjct: 430 YGTDGFFIAKLRK 442 >gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional. Length = 434 Score = 168 bits (428), Expect = 2e-42 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 42/320 (13%) Query: 120 LHIQGNIPQWLQSSFQSYFKDTWLKEAKSLSM----RAPLDLRTNTLKVNRCKLFKNLCH 175 L I + P WL + + L+EA+ L LDLR N L+ + ++ L Sbjct: 143 LAILHSFPDWLVKLWLEWLG---LEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAE 199 Query: 176 YGVHHSSISRF--GLRIPATKGKSR-LPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNS 232 G+ + I GLR+ G R LP ++ GW+ +QD +Q+V+ L Sbjct: 200 AGITATPIPGLPQGLRLTGNPGSIRQLPG------YEEGWWTVQDRSAQLVAPLLDPQPG 253 Query: 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH----- 287 ILD CA GGKT ++ L+ ++G+I A D + SR+ + +R G+ ++++ Sbjct: 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 Query: 288 SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQF 347 + E + +F +L+DAPCSG GT R PD +WR + + + E Q ++LE A Sbjct: 314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL 373 Query: 348 VRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGC 407 ++P G LVY TC++ P EN QI FL+++P + ++ P I Sbjct: 374 LKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP--------------PKQKI---- 415 Query: 408 CVLTPFLTNTDGFFFCRLKR 427 P + DGFF L++ Sbjct: 416 ---WPHRQDGDGFFMAVLRK 432 >gnl|CDD|161931 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Length = 426 Score = 157 bits (399), Expect = 4e-39 Identities = 95/309 (30%), Positives = 137/309 (44%), Gaps = 29/309 (9%) Query: 127 PQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGV----HHSS 182 P+WL Q + W ++ + R P+ LR N K +R + L G+ H + Sbjct: 138 PEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLA 197 Query: 183 ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGG 242 L PA LP F+ GW +QD +Q V+ A N ILD CA Sbjct: 198 PDAVRLETPAAVHA--LPG------FEEGWVTVQDASAQWVATWLAPQNEETILDACAAP 249 Query: 243 GGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG----IHNVQLHSSWESLRNLQE 298 GGKT + L + Q+ A D ++ R+ + +KR G S E Sbjct: 250 GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 Query: 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358 F +L+DAPCS TG RR PDIKW +++ E E Q +IL+ ++ G LVY T Sbjct: 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 Query: 359 CSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTD 418 CS+LPEEN +QI FL ++P F + K + +G + P D Sbjct: 369 CSVLPEENSEQIKAFLQEHPDFPFE------------KTGTPEQVRDGGLQILPHAEEGD 416 Query: 419 GFFFCRLKR 427 GFF+ +L + Sbjct: 417 GFFYAKLIK 425 >gnl|CDD|182822 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional. Length = 427 Score = 142 bits (361), Expect = 1e-34 Identities = 90/322 (27%), Positives = 137/322 (42%), Gaps = 46/322 (14%) Query: 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNR---CKLFKNLCHYG 177 + N P WL + + + W + + R P+ LR N +R L G Sbjct: 138 VARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEA---G 194 Query: 178 V--HHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQI 235 + ++ +R+ +LP F GW +QD +Q+ + L A N ++ Sbjct: 195 IEAFPHAVGPDAIRLETPVPVHQLPG------FAEGWVSVQDAAAQLAATLLAPQNGERV 248 Query: 236 LDFCAGGGGKTLALSMLLNNKGQIH--AWDNNKSRMAPIVARIKRAGIHNVQLH------ 287 LD CA GGKT + +L Q A D + R+ + ++R G+ + Sbjct: 249 LDACAAPGGKT---AHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 Query: 288 SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERT-EEQKKILEESAQ 346 + W + F +L+DAPCS TG RR PDIKW L + I Q +IL+ Sbjct: 306 AQWWD----GQPFDRILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWP 360 Query: 347 FVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENG 406 ++P G L+Y TCSILPEEN QQI FL+++P D+ + D Sbjct: 361 LLKPGGTLLYATCSILPEENEQQIKAFLARHP----DAELLDTGTPQQPGRQ-------- 408 Query: 407 CCVLTPFLTNTDGFFFCRLKRH 428 L P + DGFF+ L + Sbjct: 409 ---LLPGEEDGDGFFYALLIKR 427 >gnl|CDD|184897 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional. Length = 445 Score = 129 bits (327), Expect = 1e-30 Identities = 82/281 (29%), Positives = 125/281 (44%), Gaps = 38/281 (13%) Query: 120 LHIQGNIPQWLQSSFQSYFKDTWLK---EAKSLSM-----RAPL-DLRTNTLKVNRCKLF 170 L + + P+WL W+ E ++ +M +APL R N LK K Sbjct: 145 LSLLYSHPEWLLER--------WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFL 196 Query: 171 KNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDITF-------QRGWFEIQDEGSQIV 223 V T KS LPN F + G +Q+ + Sbjct: 197 AAPADASV--------------TFEKSGLPNFFLSKDFSLFEPFLKLGLVSVQNPTQALA 242 Query: 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN 283 L S +LD CA GGK+ ++ L+ N+GQI A D ++ I + GI Sbjct: 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI 302 Query: 284 VQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEE 343 ++ + +E +L+DAPC+GTG RR +++W+L+ + L E Q ++L+ Sbjct: 303 IETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH 362 Query: 344 SAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDS 384 +A ++P G LVY TCSI PEEN QI FL ++P FS + Sbjct: 363 AASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403 >gnl|CDD|129538 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase. Length = 264 Score = 127 bits (321), Expect = 5e-30 Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 19/277 (6%) Query: 157 LRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDIT----FQRGW 212 +R NTLK++ L + L + GV L +G + I + G Sbjct: 1 IRVNTLKISVADLLQRLENRGV--------TLIPWCEEGFFEVNESPLPIGSTPEYLSGL 52 Query: 213 FEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPI 272 + IQ+ S I ++LD A GGKT +S L+ N+G I A + +KSR + Sbjct: 53 YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVL 112 Query: 273 VARIKRAGIHNVQL-HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLI 331 +A I R G+ NV + + F +L+DAPCSG G R+ P K S++++ Sbjct: 113 IANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQ 172 Query: 332 ERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII-DDWN 390 E + QK++++ + ++P G LVY TCS+ PEEN ++Y L K P + D++ Sbjct: 173 EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFF 232 Query: 391 QLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKR 427 K G + P + + +GFF +L++ Sbjct: 233 GANKGKEE-----VKGALRVFPQIYDCEGFFVAKLRK 264 >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional. Length = 431 Score = 118 bits (296), Expect = 4e-27 Identities = 97/403 (24%), Positives = 186/403 (46%), Gaps = 49/403 (12%) Query: 42 DRASISNIVHDVLRK--YLS---SAYIMDSDDPESLVYAVIMKDWDIPWEKMLSMLKEDL 96 DR +V V+RK L + + D P ++ A+ M + + L Sbjct: 38 DRRFFKELVWGVVRKEELLDWYINQLLKKKDIPPAVRVALRMGAYQL------------L 85 Query: 97 FSPPLPKESVI---------KSFHS------RQLENAP----LHIQGNIPQWLQSSFQSY 137 F +P + + ++F R+L P LH++ + P+WL + ++S+ Sbjct: 86 FMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSF 145 Query: 138 F-KDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGK 196 ++ L+ + P LR N+L + R ++ K L G + G P + Sbjct: 146 LPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTE----AVPGKHSPFSLIV 201 Query: 197 SRLPNVMNDI-TFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN 255 +L MND + G +Q E SQIV L + ++LD CA GGKT A++ L+ + Sbjct: 202 RKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKD 261 Query: 256 KGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLRN-LQEHFTTVLVDAPCSGTG 313 +G+I A D ++ ++ + KR + +++ + E L +Q+ F +LVDAPC+ G Sbjct: 262 QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLG 321 Query: 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373 T R P++ R+++++ + +E Q +I+ ++ + + G L+Y TC++ EEN + + F Sbjct: 322 TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRF 381 Query: 374 LSKNPHFSIDSI---IDDWNQLYDLKNHPSLFIENGCCVLTPF 413 + + + I ++++ + L + + LTPF Sbjct: 382 VYEQKDAEVIDIRDKLEEFEVEGIWDGYGFLMLPDE--TLTPF 422 >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed. Length = 470 Score = 86.1 bits (214), Expect = 2e-17 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 53/244 (21%) Query: 211 GWFEIQDEGSQI-VSNLTAITNSSQ-ILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSR 268 G F IQ+ S + V+ L A N+ Q +LD A G KT ++ L+NN+G I A + + SR Sbjct: 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASR 150 Query: 269 MAPIVARIKRAGIHNVQL-H------SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDI 321 + + A I R G+ NV L H + L E F +L+DAPCSG GT R+ PD Sbjct: 151 VKVLHANISRCGVSNVALTHFDGRVFGAA-----LPETFDAILLDAPCSGEGTVRKDPDA 205 Query: 322 KWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH-- 379 S ++ +E Q++++E + ++P G LVY TC++ EEN + P Sbjct: 206 LKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAV 265 Query: 380 --FSIDSIIDD-------------WNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCR 424 + + + Q+YD ++GFF R Sbjct: 266 EFEPLGDLFPGAEKALTEEGFLHVFPQIYD----------------------SEGFFVAR 303 Query: 425 LKRH 428 L++ Sbjct: 304 LRKT 307 >gnl|CDD|178803 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed. Length = 244 Score = 31.2 bits (72), Expect = 0.48 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 12/33 (36%) Query: 314 TWRRRPDIKWRLSQKNLIER---TEEQKKILEE 343 T RRPD L+E+ T+E KK+L E Sbjct: 216 TKLRRPD---------LLEKLALTKEDKKLLAE 239 >gnl|CDD|131799 TIGR02752, MenG_heptapren, 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. Length = 231 Score = 29.4 bits (66), Expect = 2.1 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 201 NVMND-ITFQR--GWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKG 257 + MN I+FQR W + + + + N+ A T++ LD C G ++AL+ + +G Sbjct: 19 DRMNSVISFQRHKKW---RKDTMKRM-NVQAGTSA---LDVCCGTADWSIALAEAVGPEG 71 Query: 258 QIHAWDNNKSRMAPIVARIKRAGIHNVQL 286 + D +++ ++ ++K AG+HNV+L Sbjct: 72 HVIGLDFSENMLSVGRQKVKDAGLHNVEL 100 >gnl|CDD|181192 PRK07998, gatY, putative fructose-1,6-bisphosphate aldolase; Reviewed. Length = 283 Score = 28.2 bits (63), Expect = 3.8 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARI 276 VS T ++ DF G LA+S+ G +H ++ P++ RI Sbjct: 146 VSEADCKTEPEKVKDFVERTGCDMLAVSI-----GNVHGLEDIPRIDIPLLKRI 194 >gnl|CDD|179983 PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional. Length = 239 Score = 28.5 bits (65), Expect = 4.0 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%) Query: 260 HAWD--NNKSRMAPIVARIKRAGI 281 D ++ P +AR+K AGI Sbjct: 104 GGLDVAGQFDKLKPAIARLKDAGI 127 >gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional. Length = 289 Score = 28.0 bits (62), Expect = 4.4 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 2/44 (4%) Query: 245 KTLALSMLLNNKGQIHAWDNNKSRMAPI-VARIKRAGIHNVQLH 287 +T+AL ++ N+G +++N +RMA +A +K+ G+ NV+LH Sbjct: 75 RTVALLIITANRGLCGGFNSNLNRMAKARIAELKKKGV-NVELH 117 >gnl|CDD|182112 PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional. Length = 474 Score = 27.5 bits (61), Expect = 6.1 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 18/90 (20%) Query: 331 IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS-KNPHFSIDSIIDDW 389 I++ +IL+ + FV Y + + N N S +NP+ + DW Sbjct: 289 IDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVS----DW 344 Query: 390 -------------NQLYDLKNHPSLFIENG 406 N +YD P +ENG Sbjct: 345 GWGIDPLGLRITMNMMYDRYQKPLFLVENG 374 >gnl|CDD|150407 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes to the nucleus in osteoblasts and dimerizes with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription. Length = 309 Score = 27.3 bits (61), Expect = 7.4 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Query: 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR 349 W+R K S K L+E EE++K +E + + Sbjct: 262 AWKR----KHEKSNKALLEMAEERQKRKKEIEKLKK 293 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.135 0.417 Gapped Lambda K H 0.267 0.0641 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,008,580 Number of extensions: 440908 Number of successful extensions: 930 Number of sequences better than 10.0: 1 Number of HSP's gapped: 909 Number of HSP's successfully gapped: 17 Length of query: 429 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 333 Effective length of database: 3,920,105 Effective search space: 1305394965 Effective search space used: 1305394965 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)