RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature
protein [Candidatus Liberibacter asiaticus str. psy62]
         (429 letters)



>gnl|CDD|184895 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
          Length = 444

 Score =  218 bits (558), Expect = 2e-57
 Identities = 99/313 (31%), Positives = 158/313 (50%), Gaps = 18/313 (5%)

Query: 120 LHIQGNIPQWLQSSFQSYF-KDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNL--CHY 176
           L I+ + P WL   +   + ++   K  +SL+      +R NTLK++  +L + L    Y
Sbjct: 143 LSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGY 202

Query: 177 GVHHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQIL 236
            V  S +S   L I   KG     N+     F+ G   IQDE S +V+          +L
Sbjct: 203 EVEESLLSPEALVI--EKG-----NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVL 255

Query: 237 DFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNV--QLHSSWESLR 294
           D CA  GGKT  ++ LL N G++ A D ++ ++  I    KR G+ N+  +   + +   
Sbjct: 256 DACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE 315

Query: 295 NLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYL 354
              E F  +LVDAPCSG G  RR+PDIK+  +++++    E Q +ILE  AQ+++  G L
Sbjct: 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375

Query: 355 VYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFL 414
           VY TC+I  EEN + I  FL ++P F +  +    ++  D   +     ++G   + P  
Sbjct: 376 VYSTCTIEKEENEEVIEAFLEEHPEFELVPL---QHEKPDELVYEV---KDGYLQILPND 429

Query: 415 TNTDGFFFCRLKR 427
             TDGFF  +L++
Sbjct: 430 YGTDGFFIAKLRK 442


>gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
          Length = 434

 Score =  168 bits (428), Expect = 2e-42
 Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 42/320 (13%)

Query: 120 LHIQGNIPQWLQSSFQSYFKDTWLKEAKSLSM----RAPLDLRTNTLKVNRCKLFKNLCH 175
           L I  + P WL   +  +     L+EA+ L         LDLR N L+ +  ++   L  
Sbjct: 143 LAILHSFPDWLVKLWLEWLG---LEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAE 199

Query: 176 YGVHHSSISRF--GLRIPATKGKSR-LPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNS 232
            G+  + I     GLR+    G  R LP       ++ GW+ +QD  +Q+V+ L      
Sbjct: 200 AGITATPIPGLPQGLRLTGNPGSIRQLPG------YEEGWWTVQDRSAQLVAPLLDPQPG 253

Query: 233 SQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQLH----- 287
             ILD CA  GGKT  ++ L+ ++G+I A D + SR+  +    +R G+ ++++      
Sbjct: 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313

Query: 288 SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQF 347
           +  E     + +F  +L+DAPCSG GT  R PD +WR + + + E    Q ++LE  A  
Sbjct: 314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL 373

Query: 348 VRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGC 407
           ++P G LVY TC++ P EN  QI  FL+++P + ++               P   I    
Sbjct: 374 LKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEP--------------PKQKI---- 415

Query: 408 CVLTPFLTNTDGFFFCRLKR 427
               P   + DGFF   L++
Sbjct: 416 ---WPHRQDGDGFFMAVLRK 432


>gnl|CDD|161931 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
           RsmB.  The seed alignment is built from bacterial
           sequences only. Eukaryotic homologs include Nop2, a
           protein required for processing pre-rRNA, that is likely
           also a rRNA methyltransferase, although the fine
           specificity may differ. Cutoff scores are set to avoid
           treating archaeal and eukaroytic homologs automatically
           as functionally equivalent, although they may have very
           similar roles.
          Length = 426

 Score =  157 bits (399), Expect = 4e-39
 Identities = 95/309 (30%), Positives = 137/309 (44%), Gaps = 29/309 (9%)

Query: 127 PQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGV----HHSS 182
           P+WL    Q  +   W    ++ + R P+ LR N  K +R +    L   G+    H  +
Sbjct: 138 PEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLA 197

Query: 183 ISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGG 242
                L  PA      LP       F+ GW  +QD  +Q V+   A  N   ILD CA  
Sbjct: 198 PDAVRLETPAAVHA--LPG------FEEGWVTVQDASAQWVATWLAPQNEETILDACAAP 249

Query: 243 GGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAG----IHNVQLHSSWESLRNLQE 298
           GGKT  +  L   + Q+ A D ++ R+  +   +KR G               S     E
Sbjct: 250 GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308

Query: 299 HFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYIT 358
            F  +L+DAPCS TG  RR PDIKW    +++ E  E Q +IL+     ++  G LVY T
Sbjct: 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368

Query: 359 CSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENGCCVLTPFLTNTD 418
           CS+LPEEN +QI  FL ++P F  +            K      + +G   + P     D
Sbjct: 369 CSVLPEENSEQIKAFLQEHPDFPFE------------KTGTPEQVRDGGLQILPHAEEGD 416

Query: 419 GFFFCRLKR 427
           GFF+ +L +
Sbjct: 417 GFFYAKLIK 425


>gnl|CDD|182822 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
          Length = 427

 Score =  142 bits (361), Expect = 1e-34
 Identities = 90/322 (27%), Positives = 137/322 (42%), Gaps = 46/322 (14%)

Query: 121 HIQGNIPQWLQSSFQSYFKDTWLKEAKSLSMRAPLDLRTNTLKVNR---CKLFKNLCHYG 177
             + N P WL    +  + + W     + + R P+ LR N    +R     L       G
Sbjct: 138 VARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEA---G 194

Query: 178 V--HHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQI 235
           +     ++    +R+       +LP       F  GW  +QD  +Q+ + L A  N  ++
Sbjct: 195 IEAFPHAVGPDAIRLETPVPVHQLPG------FAEGWVSVQDAAAQLAATLLAPQNGERV 248

Query: 236 LDFCAGGGGKTLALSMLLNNKGQIH--AWDNNKSRMAPIVARIKRAGIHNVQLH------ 287
           LD CA  GGKT   + +L    Q    A D +  R+  +   ++R G+    +       
Sbjct: 249 LDACAAPGGKT---AHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305

Query: 288 SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERT-EEQKKILEESAQ 346
           + W       + F  +L+DAPCS TG  RR PDIKW L +   I      Q +IL+    
Sbjct: 306 AQWWD----GQPFDRILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWP 360

Query: 347 FVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIENG 406
            ++P G L+Y TCSILPEEN QQI  FL+++P    D+ + D                  
Sbjct: 361 LLKPGGTLLYATCSILPEENEQQIKAFLARHP----DAELLDTGTPQQPGRQ-------- 408

Query: 407 CCVLTPFLTNTDGFFFCRLKRH 428
              L P   + DGFF+  L + 
Sbjct: 409 ---LLPGEEDGDGFFYALLIKR 427


>gnl|CDD|184897 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
          Length = 445

 Score =  129 bits (327), Expect = 1e-30
 Identities = 82/281 (29%), Positives = 125/281 (44%), Gaps = 38/281 (13%)

Query: 120 LHIQGNIPQWLQSSFQSYFKDTWLK---EAKSLSM-----RAPL-DLRTNTLKVNRCKLF 170
           L +  + P+WL           W+    E ++ +M     +APL   R N LK    K  
Sbjct: 145 LSLLYSHPEWLLER--------WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFL 196

Query: 171 KNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDITF-------QRGWFEIQDEGSQIV 223
                  V              T  KS LPN      F       + G   +Q+    + 
Sbjct: 197 AAPADASV--------------TFEKSGLPNFFLSKDFSLFEPFLKLGLVSVQNPTQALA 242

Query: 224 SNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHN 283
             L      S +LD CA  GGK+  ++ L+ N+GQI A D    ++  I +     GI  
Sbjct: 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI 302

Query: 284 VQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEE 343
           ++         + +E    +L+DAPC+GTG   RR +++W+L+ + L E    Q ++L+ 
Sbjct: 303 IETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH 362

Query: 344 SAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDS 384
           +A  ++P G LVY TCSI PEEN  QI  FL ++P FS + 
Sbjct: 363 AASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEP 403


>gnl|CDD|129538 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase. 
          Length = 264

 Score =  127 bits (321), Expect = 5e-30
 Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 19/277 (6%)

Query: 157 LRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDIT----FQRGW 212
           +R NTLK++   L + L + GV         L     +G   +      I     +  G 
Sbjct: 1   IRVNTLKISVADLLQRLENRGV--------TLIPWCEEGFFEVNESPLPIGSTPEYLSGL 52

Query: 213 FEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPI 272
           + IQ+  S I           ++LD  A  GGKT  +S L+ N+G I A + +KSR   +
Sbjct: 53  YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVL 112

Query: 273 VARIKRAGIHNVQL-HSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLI 331
           +A I R G+ NV + +            F  +L+DAPCSG G  R+ P  K   S++++ 
Sbjct: 113 IANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQ 172

Query: 332 ERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSII-DDWN 390
           E +  QK++++ +   ++P G LVY TCS+ PEEN   ++Y L K P    +    D++ 
Sbjct: 173 EISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFF 232

Query: 391 QLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCRLKR 427
                K         G   + P + + +GFF  +L++
Sbjct: 233 GANKGKEE-----VKGALRVFPQIYDCEGFFVAKLRK 264


>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
          Length = 431

 Score =  118 bits (296), Expect = 4e-27
 Identities = 97/403 (24%), Positives = 186/403 (46%), Gaps = 49/403 (12%)

Query: 42  DRASISNIVHDVLRK--YLS---SAYIMDSDDPESLVYAVIMKDWDIPWEKMLSMLKEDL 96
           DR     +V  V+RK   L    +  +   D P ++  A+ M  + +            L
Sbjct: 38  DRRFFKELVWGVVRKEELLDWYINQLLKKKDIPPAVRVALRMGAYQL------------L 85

Query: 97  FSPPLPKESVI---------KSFHS------RQLENAP----LHIQGNIPQWLQSSFQSY 137
           F   +P  + +         ++F        R+L   P    LH++ + P+WL + ++S+
Sbjct: 86  FMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSF 145

Query: 138 F-KDTWLKEAKSLSMRAPLDLRTNTLKVNRCKLFKNLCHYGVHHSSISRFGLRIPATKGK 196
             ++  L+  +      P  LR N+L + R ++ K L   G      +  G   P +   
Sbjct: 146 LPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTE----AVPGKHSPFSLIV 201

Query: 197 SRLPNVMNDI-TFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNN 255
            +L   MND    + G   +Q E SQIV  L  +    ++LD CA  GGKT A++ L+ +
Sbjct: 202 RKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKD 261

Query: 256 KGQIHAWDNNKSRMAPIVARIKRAGIHNVQ-LHSSWESLRN-LQEHFTTVLVDAPCSGTG 313
           +G+I A D ++ ++  +    KR  + +++   +  E L   +Q+ F  +LVDAPC+  G
Sbjct: 262 QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLG 321

Query: 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYF 373
           T R  P++  R+++++  + +E Q +I+ ++ + +   G L+Y TC++  EEN + +  F
Sbjct: 322 TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRF 381

Query: 374 LSKNPHFSIDSI---IDDWNQLYDLKNHPSLFIENGCCVLTPF 413
           + +     +  I   ++++        +  L + +    LTPF
Sbjct: 382 VYEQKDAEVIDIRDKLEEFEVEGIWDGYGFLMLPDE--TLTPF 422


>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
           Reviewed.
          Length = 470

 Score = 86.1 bits (214), Expect = 2e-17
 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 53/244 (21%)

Query: 211 GWFEIQDEGSQI-VSNLTAITNSSQ-ILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSR 268
           G F IQ+  S + V+ L A  N+ Q +LD  A  G KT  ++ L+NN+G I A + + SR
Sbjct: 91  GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASR 150

Query: 269 MAPIVARIKRAGIHNVQL-H------SSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDI 321
           +  + A I R G+ NV L H       +      L E F  +L+DAPCSG GT R+ PD 
Sbjct: 151 VKVLHANISRCGVSNVALTHFDGRVFGAA-----LPETFDAILLDAPCSGEGTVRKDPDA 205

Query: 322 KWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNPH-- 379
               S ++ +E    Q++++E +   ++P G LVY TC++  EEN     +     P   
Sbjct: 206 LKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAV 265

Query: 380 --FSIDSIIDD-------------WNQLYDLKNHPSLFIENGCCVLTPFLTNTDGFFFCR 424
               +  +                + Q+YD                      ++GFF  R
Sbjct: 266 EFEPLGDLFPGAEKALTEEGFLHVFPQIYD----------------------SEGFFVAR 303

Query: 425 LKRH 428
           L++ 
Sbjct: 304 LRKT 307


>gnl|CDD|178803 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.
          Length = 244

 Score = 31.2 bits (72), Expect = 0.48
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 12/33 (36%)

Query: 314 TWRRRPDIKWRLSQKNLIER---TEEQKKILEE 343
           T  RRPD         L+E+   T+E KK+L E
Sbjct: 216 TKLRRPD---------LLEKLALTKEDKKLLAE 239


>gnl|CDD|131799 TIGR02752, MenG_heptapren, 2-heptaprenyl-1,4-naphthoquinone
           methyltransferase.  MenG is a generic term for a
           methyltransferase that catalyzes the last step in
           menaquinone biosynthesis; the exact enzymatic activity
           differs for different MenG because the menaquinone
           differ in their prenoid side chains in different
           species. Members of this MenG protein family are
           2-heptaprenyl-1,4-naphthoquinone methyltransferase, and
           are found together in operons with the two subunits of
           the heptaprenyl diphosphate synthase in Bacillus
           subtilis and related species.
          Length = 231

 Score = 29.4 bits (66), Expect = 2.1
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 201 NVMND-ITFQR--GWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKG 257
           + MN  I+FQR   W   + +  + + N+ A T++   LD C G    ++AL+  +  +G
Sbjct: 19  DRMNSVISFQRHKKW---RKDTMKRM-NVQAGTSA---LDVCCGTADWSIALAEAVGPEG 71

Query: 258 QIHAWDNNKSRMAPIVARIKRAGIHNVQL 286
            +   D +++ ++    ++K AG+HNV+L
Sbjct: 72  HVIGLDFSENMLSVGRQKVKDAGLHNVEL 100


>gnl|CDD|181192 PRK07998, gatY, putative fructose-1,6-bisphosphate aldolase;
           Reviewed.
          Length = 283

 Score = 28.2 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 223 VSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARI 276
           VS     T   ++ DF    G   LA+S+     G +H  ++      P++ RI
Sbjct: 146 VSEADCKTEPEKVKDFVERTGCDMLAVSI-----GNVHGLEDIPRIDIPLLKRI 194


>gnl|CDD|179983 PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.
          Length = 239

 Score = 28.5 bits (65), Expect = 4.0
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 260 HAWD--NNKSRMAPIVARIKRAGI 281
              D      ++ P +AR+K AGI
Sbjct: 104 GGLDVAGQFDKLKPAIARLKDAGI 127


>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional.
          Length = 289

 Score = 28.0 bits (62), Expect = 4.4
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 245 KTLALSMLLNNKGQIHAWDNNKSRMAPI-VARIKRAGIHNVQLH 287
           +T+AL ++  N+G    +++N +RMA   +A +K+ G+ NV+LH
Sbjct: 75  RTVALLIITANRGLCGGFNSNLNRMAKARIAELKKKGV-NVELH 117


>gnl|CDD|182112 PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase;
           Provisional.
          Length = 474

 Score = 27.5 bits (61), Expect = 6.1
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 331 IERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLS-KNPHFSIDSIIDDW 389
           I++     +IL+ +  FV    Y      + +   N    N   S +NP+  +     DW
Sbjct: 289 IDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVS----DW 344

Query: 390 -------------NQLYDLKNHPSLFIENG 406
                        N +YD    P   +ENG
Sbjct: 345 GWGIDPLGLRITMNMMYDRYQKPLFLVENG 374


>gnl|CDD|150407 pfam09728, Taxilin, Myosin-like coiled-coil protein.  Taxilin
           contains an extraordinarily long coiled-coil domain in
           its C-terminal half and is ubiquitously expressed. It is
           a novel binding partner of several syntaxin family
           members and is possibly involved in Ca2+-dependent
           exocytosis in neuroendocrine cells. Gamma-taxilin,
           described as leucine zipper protein Factor Inhibiting
           ATF4-mediated Transcription (FIAT), localizes to the
           nucleus in osteoblasts and dimerizes with ATF4 to form
           inactive dimers, thus inhibiting ATF4-mediated
           transcription.
          Length = 309

 Score = 27.3 bits (61), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 314 TWRRRPDIKWRLSQKNLIERTEEQKKILEESAQFVR 349
            W+R    K   S K L+E  EE++K  +E  +  +
Sbjct: 262 AWKR----KHEKSNKALLEMAEERQKRKKEIEKLKK 293


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,008,580
Number of extensions: 440908
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 17
Length of query: 429
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 333
Effective length of database: 3,920,105
Effective search space: 1305394965
Effective search space used: 1305394965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)