Query         gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 412
No_of_seqs    152 out of 369
Neff          7.2 
Searched_HMMs 13730
Date          Wed Jun  1 08:59:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780635.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1nvpd1 a.32.1.1 (D:3-53) Smal  11.0      32  0.0024   11.1   3.9   28  323-350    16-45  (51)
  2 d1nh2d1 a.32.1.1 (D:5-54) Smal   9.7      36  0.0026   10.9   4.2   28  323-350    18-47  (50)
  3 d1st6a6 a.24.9.1 (A:647-718) V   8.6      40  0.0029   10.6   5.9   32   46-77     24-59  (72)
  4 d1xwea_ b.40.3.3 (A:) Compleme   8.0      41   0.003   10.5   0.1   51  174-224    89-147 (151)
  5 d1xoua_ a.231.1.1 (A:) Secrete   6.5      51  0.0037   10.0   3.2   31  320-357    89-119 (160)
  6 d1hv5a_ d.92.1.11 (A:) Stromel   6.1      55   0.004    9.8   0.7   36   66-101    26-61  (162)
  7 d1wa8b1 a.25.3.1 (B:602-695) E   5.9      57  0.0042    9.6   5.1   49  211-259    19-68  (94)
  8 d1mmqa_ d.92.1.11 (A:) Matrily   5.5      62  0.0045    9.4   1.0   36   66-101    27-62  (166)
  9 d2ovxa1 d.92.1.11 (A:110-443)    5.2      67  0.0049    9.2   0.6   36   62-97     20-55  (159)
 10 d2cbia1 a.246.1.1 (A:496-624)    5.0      70  0.0051    9.1   7.2   58   26-84     10-69  (129)

No 1  
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01  E-value=32  Score=11.14  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             CHHHHHHHH--CHHHHHHHHHHHHHHHHHH
Q ss_conf             689999751--8878999999999999999
Q gi|254780635|r  323 SIHDLISHN--NRNLAQEINDKFSNTMKDF  350 (412)
Q Consensus       323 sl~d~l~~~--~~~La~~i~~~f~~a~~~l  350 (412)
                      .|++++...  .|.|+-+|-.+|+.++...
T Consensus        16 tLDeli~~~~I~p~LA~kVL~qFDk~i~~a   45 (51)
T d1nvpd1          16 SLDELIQSQQITPQLALQVLLQFDKAINAA   45 (51)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999859989999999999987999999


No 2  
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.70  E-value=36  Score=10.85  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             CHHHHHHHH--CHHHHHHHHHHHHHHHHHH
Q ss_conf             689999751--8878999999999999999
Q gi|254780635|r  323 SIHDLISHN--NRNLAQEINDKFSNTMKDF  350 (412)
Q Consensus       323 sl~d~l~~~--~~~La~~i~~~f~~a~~~l  350 (412)
                      .|++++...  .|.|+-+|-.+|+.++...
T Consensus        18 tLDeli~~~~I~p~LA~kVL~qFDk~i~~a   47 (50)
T d1nh2d1          18 ALDTLISDGRIEASLAMRVLETFDKVVAET   47 (50)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999859989899999999988999998


No 3  
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.64  E-value=40  Score=10.60  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHH
Q ss_conf             999999999999994999----88999999999999
Q gi|254780635|r   46 MCARTLDSAIETLVTTPN----KKNLENARLQWIRA   77 (412)
Q Consensus        46 ~~a~~L~~ai~af~a~Pt----~~~L~aak~aw~~A   77 (412)
                      .=.-++..+...++..|+    .++++..|+.|...
T Consensus        24 ~L~PQVi~AariL~~~P~sK~a~En~e~~~~~W~~~   59 (72)
T d1st6a6          24 ELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDN   59 (72)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             878899999999998888477999999999999999


No 4  
>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.03  E-value=41  Score=10.53  Aligned_cols=51  Identities=10%  Similarity=0.160  Sum_probs=23.8

Q ss_pred             HHHHHHCCCCCCCCCCC--------CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99998627787776555--------5553034320113345404567999999999999
Q gi|254780635|r  174 VIEFLLWGQDLKTNVRE--------PGNRPYTDFDIGNCTGGHCRRRVEYLKVVSKILV  224 (412)
Q Consensus       174 AiEyLLfg~~~~~~~~~--------~~~r~~~d~~~~~~t~~~~~rr~~YL~ava~~l~  224 (412)
                      .=+||++|.+...-...        .+.+++-++++....-.+...+|.-|..-+..+.
T Consensus        89 gk~YLIMG~~~~~~~~~~~~~Y~y~Ld~~TwVE~WP~~~~C~~~r~~c~~l~~f~~~~~  147 (151)
T d1xwea_          89 GRQYLIMGKEALQIKYNASFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIF  147 (151)
T ss_dssp             TCEEEEEECCCCCCCSSSSCCCCBCCCSSSEEEEECSCSSSSSCCCTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97799950456625668865899973886089989984465789999999999999864


No 5  
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]}
Probab=6.48  E-value=51  Score=9.97  Aligned_cols=31  Identities=3%  Similarity=0.031  Sum_probs=15.0

Q ss_pred             CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56468999975188789999999999999998311113
Q gi|254780635|r  320 HGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRA  357 (412)
Q Consensus       320 ~g~sl~d~l~~~~~~La~~i~~~f~~a~~~l~ai~~~~  357 (412)
                      .+.|+++|.+..|       ..++..++.+++......
T Consensus        89 ~v~~idd~~~~Ld-------kG~LqaVKaALd~~snr~  119 (160)
T d1xoua_          89 TISGIDNINAQLG-------AGDLQTVKAAISAKANNL  119 (160)
T ss_dssp             ------------------------------------CH
T ss_pred             CCCCHHHHCCCCC-------HHHHHHHHHHHHHHCCCC
T ss_conf             5134765155467-------246999999987111443


No 6  
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.08  E-value=55  Score=9.75  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999999999997776565401540221000110
Q gi|254780635|r   66 NLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKV  101 (412)
Q Consensus        66 ~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~~i  101 (412)
                      .-...|.+...|...|+.+-.++|-......-+.+|
T Consensus        26 ~~~~~~~~i~~A~~~W~~v~~i~F~ev~~~~~di~i   61 (162)
T d1hv5a_          26 VREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMI   61 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSSCEEEECSSSBCSEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
T ss_conf             999999999999999866378507985058876589


No 7  
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.87  E-value=57  Score=9.64  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHCCHHHHHHHHHHHH
Q ss_conf             6799999999999999999995203554-105776215344599999999
Q gi|254780635|r  211 RRVEYLKVVSKILVSDLEEMMKAWGPDG-QATKDLMKDINAGLNSIITGM  259 (412)
Q Consensus       211 rr~~YL~ava~~l~~~~~~l~~~W~~~~-~~~~~~~~~~~~~~~~i~~g~  259 (412)
                      ....-+...-+.|...+..|...|.+.. ..+.......+.....+...+
T Consensus        19 ~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L   68 (94)
T d1wa8b1          19 GNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNAL   68 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999977333588999999999999999999999


No 8  
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55  E-value=62  Score=9.45  Aligned_cols=36  Identities=11%  Similarity=-0.052  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999999999997776565401540221000110
Q gi|254780635|r   66 NLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKV  101 (412)
Q Consensus        66 ~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~~i  101 (412)
                      .....|..++.|...|+.+..++|-......-+..|
T Consensus        27 ~~~~~~~~i~~A~~~W~~v~~i~F~~v~~~~~di~i   62 (166)
T d1mmqa_          27 PHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMI   62 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCEEEECSSSCCSEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf             989999999999999867377158965467765489


No 9  
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.21  E-value=67  Score=9.24  Aligned_cols=36  Identities=8%  Similarity=-0.066  Sum_probs=26.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             998899999999999999777656540154022100
Q gi|254780635|r   62 PNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTW   97 (412)
Q Consensus        62 Pt~~~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~   97 (412)
                      |.....+..++++..|...|+.+-.++|........
T Consensus        20 ~~~~~~~~~~~~i~~A~~~W~~~~~i~F~ev~~~~~   55 (159)
T d2ovxa1          20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDA   55 (159)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             999998999999999999997237852898237887


No 10 
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=5.05  E-value=70  Score=9.14  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999988788--6798899999999999999999994999889999999999999977765
Q gi|254780635|r   26 LEKVLQNYAT--IAHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQS   84 (412)
Q Consensus        26 ~~~vl~~yad--iv~~~Y~d~~~~a~~L~~ai~af~a~Pt~~~L~aak~aw~~Ar~~we~~   84 (412)
                      .+++.+-+.+  .+...+.++......+..+.+.|.+.++..-+ .=...|+.+...|.+.
T Consensus        10 l~~f~~kl~~G~~~~a~~~~L~~eF~~i~~A~~~~r~~~~n~~l-~ei~pWL~~~~~~g~A   69 (129)
T d2cbia1          10 MDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEVAL-EECSRQLDELITLAQG   69 (129)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf             99999998789834999999999999999989999854875379-9999999999999999


Done!