Query gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 412 No_of_seqs 152 out of 369 Neff 7.2 Searched_HMMs 13730 Date Wed Jun 1 08:59:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780635.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1nvpd1 a.32.1.1 (D:3-53) Smal 11.0 32 0.0024 11.1 3.9 28 323-350 16-45 (51) 2 d1nh2d1 a.32.1.1 (D:5-54) Smal 9.7 36 0.0026 10.9 4.2 28 323-350 18-47 (50) 3 d1st6a6 a.24.9.1 (A:647-718) V 8.6 40 0.0029 10.6 5.9 32 46-77 24-59 (72) 4 d1xwea_ b.40.3.3 (A:) Compleme 8.0 41 0.003 10.5 0.1 51 174-224 89-147 (151) 5 d1xoua_ a.231.1.1 (A:) Secrete 6.5 51 0.0037 10.0 3.2 31 320-357 89-119 (160) 6 d1hv5a_ d.92.1.11 (A:) Stromel 6.1 55 0.004 9.8 0.7 36 66-101 26-61 (162) 7 d1wa8b1 a.25.3.1 (B:602-695) E 5.9 57 0.0042 9.6 5.1 49 211-259 19-68 (94) 8 d1mmqa_ d.92.1.11 (A:) Matrily 5.5 62 0.0045 9.4 1.0 36 66-101 27-62 (166) 9 d2ovxa1 d.92.1.11 (A:110-443) 5.2 67 0.0049 9.2 0.6 36 62-97 20-55 (159) 10 d2cbia1 a.246.1.1 (A:496-624) 5.0 70 0.0051 9.1 7.2 58 26-84 10-69 (129) No 1 >d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=11.01 E-value=32 Score=11.14 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=21.2 Q ss_pred CHHHHHHHH--CHHHHHHHHHHHHHHHHHH Q ss_conf 689999751--8878999999999999999 Q gi|254780635|r 323 SIHDLISHN--NRNLAQEINDKFSNTMKDF 350 (412) Q Consensus 323 sl~d~l~~~--~~~La~~i~~~f~~a~~~l 350 (412) .|++++... .|.|+-+|-.+|+.++... T Consensus 16 tLDeli~~~~I~p~LA~kVL~qFDk~i~~a 45 (51) T d1nvpd1 16 SLDELIQSQQITPQLALQVLLQFDKAINAA 45 (51) T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999859989999999999987999999 No 2 >d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=9.70 E-value=36 Score=10.85 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=20.6 Q ss_pred CHHHHHHHH--CHHHHHHHHHHHHHHHHHH Q ss_conf 689999751--8878999999999999999 Q gi|254780635|r 323 SIHDLISHN--NRNLAQEINDKFSNTMKDF 350 (412) Q Consensus 323 sl~d~l~~~--~~~La~~i~~~f~~a~~~l 350 (412) .|++++... .|.|+-+|-.+|+.++... T Consensus 18 tLDeli~~~~I~p~LA~kVL~qFDk~i~~a 47 (50) T d1nh2d1 18 ALDTLISDGRIEASLAMRVLETFDKVVAET 47 (50) T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999859989899999999988999998 No 3 >d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Probab=8.64 E-value=40 Score=10.60 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHH Q ss_conf 999999999999994999----88999999999999 Q gi|254780635|r 46 MCARTLDSAIETLVTTPN----KKNLENARLQWIRA 77 (412) Q Consensus 46 ~~a~~L~~ai~af~a~Pt----~~~L~aak~aw~~A 77 (412) .=.-++..+...++..|+ .++++..|+.|... T Consensus 24 ~L~PQVi~AariL~~~P~sK~a~En~e~~~~~W~~~ 59 (72) T d1st6a6 24 ELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDN 59 (72) T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH T ss_pred HHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 878899999999998888477999999999999999 No 4 >d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens) [TaxId: 9606]} Probab=8.03 E-value=41 Score=10.53 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=23.8 Q ss_pred HHHHHHCCCCCCCCCCC--------CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998627787776555--------5553034320113345404567999999999999 Q gi|254780635|r 174 VIEFLLWGQDLKTNVRE--------PGNRPYTDFDIGNCTGGHCRRRVEYLKVVSKILV 224 (412) Q Consensus 174 AiEyLLfg~~~~~~~~~--------~~~r~~~d~~~~~~t~~~~~rr~~YL~ava~~l~ 224 (412) .=+||++|.+...-... .+.+++-++++....-.+...+|.-|..-+..+. T Consensus 89 gk~YLIMG~~~~~~~~~~~~~Y~y~Ld~~TwVE~WP~~~~C~~~r~~c~~l~~f~~~~~ 147 (151) T d1xwea_ 89 GRQYLIMGKEALQIKYNASFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIF 147 (151) T ss_dssp TCEEEEEECCCCCCCSSSSCCCCBCCCSSSEEEEECSCSSSSSCCCTHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97799950456625668865899973886089989984465789999999999999864 No 5 >d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]} Probab=6.48 E-value=51 Score=9.97 Aligned_cols=31 Identities=3% Similarity=0.031 Sum_probs=15.0 Q ss_pred CCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 56468999975188789999999999999998311113 Q gi|254780635|r 320 HGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRA 357 (412) Q Consensus 320 ~g~sl~d~l~~~~~~La~~i~~~f~~a~~~l~ai~~~~ 357 (412) .+.|+++|.+..| ..++..++.+++...... T Consensus 89 ~v~~idd~~~~Ld-------kG~LqaVKaALd~~snr~ 119 (160) T d1xoua_ 89 TISGIDNINAQLG-------AGDLQTVKAAISAKANNL 119 (160) T ss_dssp ------------------------------------CH T ss_pred CCCCHHHHCCCCC-------HHHHHHHHHHHHHHCCCC T ss_conf 5134765155467-------246999999987111443 No 6 >d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.08 E-value=55 Score=9.75 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999999999997776565401540221000110 Q gi|254780635|r 66 NLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKV 101 (412) Q Consensus 66 ~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~~i 101 (412) .-...|.+...|...|+.+-.++|-......-+.+| T Consensus 26 ~~~~~~~~i~~A~~~W~~v~~i~F~ev~~~~~di~i 61 (162) T d1hv5a_ 26 VREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMI 61 (162) T ss_dssp CHHHHHHHHHHHHHHHHTTSSCEEEECSSSBCSEEE T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE T ss_conf 999999999999999866378507985058876589 No 7 >d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]} Probab=5.87 E-value=57 Score=9.64 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHCCHHHHHHHHHHHH Q ss_conf 6799999999999999999995203554-105776215344599999999 Q gi|254780635|r 211 RRVEYLKVVSKILVSDLEEMMKAWGPDG-QATKDLMKDINAGLNSIITGM 259 (412) Q Consensus 211 rr~~YL~ava~~l~~~~~~l~~~W~~~~-~~~~~~~~~~~~~~~~i~~g~ 259 (412) ....-+...-+.|...+..|...|.+.. ..+.......+.....+...+ T Consensus 19 ~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L 68 (94) T d1wa8b1 19 GNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNAL 68 (94) T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999977333588999999999999999999999 No 8 >d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.55 E-value=62 Score=9.45 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999999999997776565401540221000110 Q gi|254780635|r 66 NLENARLQWIRARIPYQQSEVYRFGNKIVDTWDKKV 101 (412) Q Consensus 66 ~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~~~~i 101 (412) .....|..++.|...|+.+..++|-......-+..| T Consensus 27 ~~~~~~~~i~~A~~~W~~v~~i~F~~v~~~~~di~i 62 (166) T d1mmqa_ 27 PHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMI 62 (166) T ss_dssp CHHHHHHHHHHHHHHHHHHSSCEEEECSSSCCSEEE T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE T ss_conf 989999999999999867377158965467765489 No 9 >d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Probab=5.21 E-value=67 Score=9.24 Aligned_cols=36 Identities=8% Similarity=-0.066 Sum_probs=26.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 998899999999999999777656540154022100 Q gi|254780635|r 62 PNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDTW 97 (412) Q Consensus 62 Pt~~~L~aak~aw~~Ar~~we~~E~f~fGpa~~~~~ 97 (412) |.....+..++++..|...|+.+-.++|........ T Consensus 20 ~~~~~~~~~~~~i~~A~~~W~~~~~i~F~ev~~~~~ 55 (159) T d2ovxa1 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDA 55 (159) T ss_dssp CTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTS T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 999998999999999999997237852898237887 No 10 >d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]} Probab=5.05 E-value=70 Score=9.14 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=0.0 Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999988788--6798899999999999999999994999889999999999999977765 Q gi|254780635|r 26 LEKVLQNYAT--IAHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQS 84 (412) Q Consensus 26 ~~~vl~~yad--iv~~~Y~d~~~~a~~L~~ai~af~a~Pt~~~L~aak~aw~~Ar~~we~~ 84 (412) .+++.+-+.+ .+...+.++......+..+.+.|.+.++..-+ .=...|+.+...|.+. T Consensus 10 l~~f~~kl~~G~~~~a~~~~L~~eF~~i~~A~~~~r~~~~n~~l-~ei~pWL~~~~~~g~A 69 (129) T d2cbia1 10 MDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEVAL-EECSRQLDELITLAQG 69 (129) T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHH T ss_conf 99999998789834999999999999999989999854875379-9999999999999999 Done!