RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780635|ref|YP_003065048.1| hypothetical protein
CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62]
         (412 letters)



>gnl|CDD|150145 pfam09375, Peptidase_M75, Imelysin.  The imelysin peptidase was
           first identified in Pseudomonas aeruginosa. The active
           site residues have not been identified. However, His201
           and Glu204 are completely conserved in the family and
           occur in an HXXE motif that is also found in family M14.
          Length = 285

 Score =  226 bits (577), Expect = 1e-59
 Identities = 95/358 (26%), Positives = 150/358 (41%), Gaps = 75/358 (20%)

Query: 37  AHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDT 96
           A   Y D L  A  L +A + L   P+  +L  AR  W+ AR+ +Q+ E +RFG   VD 
Sbjct: 1   ALPGYADLLTAAEALATAADALCAAPSAADLAAARAAWLAARLAWQRVEPFRFG--PVDE 58

Query: 97  WDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLR 156
            + ++N WP DEG +D V  +                          + D   ++P+LL 
Sbjct: 59  REGQINFWPDDEGLLDRVIDAL-------------------------DADEDDLTPELLA 93

Query: 157 KLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEYL 216
           +        +    G+H +E+LL+GQDL       G RP TD+    C          YL
Sbjct: 94  EE-------SVAVQGFHALEYLLFGQDL------AGARPATDY----C---------AYL 127

Query: 217 KVVSKILVSDLEEMMKAWGPDGQATKDLMK--DINAGLNSIITGMTSLSYNELAGERMNL 274
           K V+ +LVSD +E+  AW       + L+   D    L  ++ G+ SL   ELA E++  
Sbjct: 128 KAVADLLVSDAQELAAAWQAGTGGYRALLTARDEKEALEELLNGLISL-LEELADEKLGR 186

Query: 275 GLILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRN 334
            L   DPE E    SDN+ A    ++ G+ + Y G           G  + DL+   +  
Sbjct: 187 PLGTPDPEGEESWRSDNSLADIQANLEGLRNVYLG-----------GPGLRDLLEAADPA 235

Query: 335 LAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESL 392
           LA  I+ +F+  +     L           Q ++  + +G  ++  L + L      L
Sbjct: 236 LAARIDAQFAAALAALAALDT------PLGQALA--DADGRALLEALQDALSELLALL 285


>gnl|CDD|152241 pfam11805, DUF3326, Protein of unknown function (DUF3326).  This
          protein is functionally uncharacterized. It is about
          300-500 amino acids in length. This family is found in
          plants and bacteria.
          Length = 339

 Score = 29.1 bits (66), Expect = 2.0
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 43 DALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPY 81
          DAL  AR L SA + L+T PN  N   A L W    I Y
Sbjct: 21 DALPAARLLASACDCLITHPNVMN--GASLYWPDPNILY 57


>gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase;
           Provisional.
          Length = 178

 Score = 28.4 bits (63), Expect = 3.0
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 345 NTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIEP 404
           +T +D  ILKD  E+I   D +I E              D+I    +L K+R  L L EP
Sbjct: 75  STTRDVKILKDLDEDIRGKDVLIVE--------------DIIDSGNTLSKVREILSLREP 120


>gnl|CDD|173321 PTZ00021, PTZ00021, falcipain-2; Provisional.
          Length = 489

 Score = 28.6 bits (64), Expect = 3.0
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 294 ASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHIL 353
           +SY  +     +  +GE               +    N  NL         N   D   L
Sbjct: 101 SSYDKEKNNQETKNSGELKTFADFDGKNNKSVENFRKNFGNLKNVKKVYLIN-FADSKFL 159

Query: 354 KDRAENIESFDQMISENN 371
               EN+ SF   I E+ 
Sbjct: 160 MTNLENVNSFYLFIKEHG 177


>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
          Length = 407

 Score = 28.8 bits (64), Expect = 3.0
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 277 ILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASI 324
           +   PE ++    D   + YL+ + G    Y GEY+ + G+K++G  +
Sbjct: 170 VFAHPEVQMGFHPDAGASYYLSRLPG----YLGEYLALTGQKLNGVEM 213


>gnl|CDD|183819 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
          Length = 255

 Score = 27.9 bits (63), Expect = 4.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 211 RRVEYLKVVSKILVSDLEEMMKAWGPDGQATKDL 244
           R +E ++ + +I+ + L+EM KA  P G  TK+L
Sbjct: 14  RELEKMRKIGRIVATALKEMGKAVEP-GMTTKEL 46


>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate
           synthase; Provisional.
          Length = 542

 Score = 27.5 bits (61), Expect = 6.5
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 350 FHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIE 403
             IL+D A  + +FD      +P     + +++ +LI +T  ++   ++ DL E
Sbjct: 371 LRILEDHAAELRAFDGSTFLGSP-----LEDVVAELIERTVKVKAYHVSSDLKE 419


>gnl|CDD|179193 PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional.
          Length = 446

 Score = 27.3 bits (61), Expect = 8.7
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 342 KFSNTMKDFHILKDRAENIESFDQMIS-------ENNPEGNKIVRNLIND 384
            FSN  +         E+IES  + I+       E  P G      L  D
Sbjct: 6   DFSNVFEPNIGGGISIEDIESVKEKITSAVENLMEKEPNGELGFLELPYD 55


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,756,958
Number of extensions: 441964
Number of successful extensions: 900
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 17
Length of query: 412
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 316
Effective length of database: 3,920,105
Effective search space: 1238753180
Effective search space used: 1238753180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)