RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] (412 letters) >gnl|CDD|150145 pfam09375, Peptidase_M75, Imelysin. The imelysin peptidase was first identified in Pseudomonas aeruginosa. The active site residues have not been identified. However, His201 and Glu204 are completely conserved in the family and occur in an HXXE motif that is also found in family M14. Length = 285 Score = 226 bits (577), Expect = 1e-59 Identities = 95/358 (26%), Positives = 150/358 (41%), Gaps = 75/358 (20%) Query: 37 AHAKYEDALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPYQQSEVYRFGNKIVDT 96 A Y D L A L +A + L P+ +L AR W+ AR+ +Q+ E +RFG VD Sbjct: 1 ALPGYADLLTAAEALATAADALCAAPSAADLAAARAAWLAARLAWQRVEPFRFG--PVDE 58 Query: 97 WDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANIIANSKIIVNEKEIDLSIISPDLLR 156 + ++N WP DEG +D V + + D ++P+LL Sbjct: 59 REGQINFWPDDEGLLDRVIDAL-------------------------DADEDDLTPELLA 93 Query: 157 KLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEYL 216 + + G+H +E+LL+GQDL G RP TD+ C YL Sbjct: 94 EE-------SVAVQGFHALEYLLFGQDL------AGARPATDY----C---------AYL 127 Query: 217 KVVSKILVSDLEEMMKAWGPDGQATKDLMK--DINAGLNSIITGMTSLSYNELAGERMNL 274 K V+ +LVSD +E+ AW + L+ D L ++ G+ SL ELA E++ Sbjct: 128 KAVADLLVSDAQELAAAWQAGTGGYRALLTARDEKEALEELLNGLISL-LEELADEKLGR 186 Query: 275 GLILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRN 334 L DPE E SDN+ A ++ G+ + Y G G + DL+ + Sbjct: 187 PLGTPDPEGEESWRSDNSLADIQANLEGLRNVYLG-----------GPGLRDLLEAADPA 235 Query: 335 LAQEINDKFSNTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESL 392 LA I+ +F+ + L Q ++ + +G ++ L + L L Sbjct: 236 LAARIDAQFAAALAALAALDT------PLGQALA--DADGRALLEALQDALSELLALL 285 >gnl|CDD|152241 pfam11805, DUF3326, Protein of unknown function (DUF3326). This protein is functionally uncharacterized. It is about 300-500 amino acids in length. This family is found in plants and bacteria. Length = 339 Score = 29.1 bits (66), Expect = 2.0 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 43 DALMCARTLDSAIETLVTTPNKKNLENARLQWIRARIPY 81 DAL AR L SA + L+T PN N A L W I Y Sbjct: 21 DALPAARLLASACDCLITHPNVMN--GASLYWPDPNILY 57 >gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional. Length = 178 Score = 28.4 bits (63), Expect = 3.0 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 14/60 (23%) Query: 345 NTMKDFHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIEP 404 +T +D ILKD E+I D +I E D+I +L K+R L L EP Sbjct: 75 STTRDVKILKDLDEDIRGKDVLIVE--------------DIIDSGNTLSKVREILSLREP 120 >gnl|CDD|173321 PTZ00021, PTZ00021, falcipain-2; Provisional. Length = 489 Score = 28.6 bits (64), Expect = 3.0 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 1/78 (1%) Query: 294 ASYLNDVIGIISSYTGEYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHIL 353 +SY + + +GE + N NL N D L Sbjct: 101 SSYDKEKNNQETKNSGELKTFADFDGKNNKSVENFRKNFGNLKNVKKVYLIN-FADSKFL 159 Query: 354 KDRAENIESFDQMISENN 371 EN+ SF I E+ Sbjct: 160 MTNLENVNSFYLFIKEHG 177 >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein. Length = 407 Score = 28.8 bits (64), Expect = 3.0 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 277 ILHDPEQEIDCFSDNTYASYLNDVIGIISSYTGEYIRMNGEKIHGASI 324 + PE ++ D + YL+ + G Y GEY+ + G+K++G + Sbjct: 170 VFAHPEVQMGFHPDAGASYYLSRLPG----YLGEYLALTGQKLNGVEM 213 >gnl|CDD|183819 PRK12896, PRK12896, methionine aminopeptidase; Reviewed. Length = 255 Score = 27.9 bits (63), Expect = 4.8 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 211 RRVEYLKVVSKILVSDLEEMMKAWGPDGQATKDL 244 R +E ++ + +I+ + L+EM KA P G TK+L Sbjct: 14 RELEKMRKIGRIVATALKEMGKAVEP-GMTTKEL 46 >gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional. Length = 542 Score = 27.5 bits (61), Expect = 6.5 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 350 FHILKDRAENIESFDQMISENNPEGNKIVRNLINDLITQTESLRKIRIALDLIE 403 IL+D A + +FD +P + +++ +LI +T ++ ++ DL E Sbjct: 371 LRILEDHAAELRAFDGSTFLGSP-----LEDVVAELIERTVKVKAYHVSSDLKE 419 >gnl|CDD|179193 PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional. Length = 446 Score = 27.3 bits (61), Expect = 8.7 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 7/50 (14%) Query: 342 KFSNTMKDFHILKDRAENIESFDQMIS-------ENNPEGNKIVRNLIND 384 FSN + E+IES + I+ E P G L D Sbjct: 6 DFSNVFEPNIGGGISIEDIESVKEKITSAVENLMEKEPNGELGFLELPYD 55 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.135 0.392 Gapped Lambda K H 0.267 0.0692 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,756,958 Number of extensions: 441964 Number of successful extensions: 900 Number of sequences better than 10.0: 1 Number of HSP's gapped: 894 Number of HSP's successfully gapped: 17 Length of query: 412 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 316 Effective length of database: 3,920,105 Effective search space: 1238753180 Effective search space used: 1238753180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.2 bits)