HHsearch alignment for GI: 254780636 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=349.01 Aligned_cols=198 Identities=42% Similarity=0.644 Sum_probs=180.1
Q ss_pred CCCCCCHH-H-HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCH
Q ss_conf 25788857-8-424898279971777898544507999984189428997465778570677677732364023010000
Q gi|254780636|r 7 HEGDIPAE-C-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 (207)
Q Consensus 7 ~~~dl~~~-~-~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~ 84 (207)
T Consensus 2 ~~~~~l~~~~~~~~~~~~iAIDTEf~r~~t~~p~LcLIQi~~~e~-~~lIdp~~~~~d~~~l~~Ll~d~~v~KIfHaa~~ 80 (361)
T COG0349 2 TTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEG-ASLIDPLAGILDLPPLVALLADPNVVKIFHAARF 80 (361)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC-CEEECCCCCCCCCCHHHHHHCCCCEEEEECCCCC
T ss_conf 742679999997428980798322246643688337999844888-6686226554666369998628760255025635
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 16888654200000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 (207)
Q Consensus 85 D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~ 164 (207)
T Consensus 81 DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~ 159 (361)
T COG0349 81 DLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLY 159 (361)
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 199999861888773468999999809863-2329999999968853644454655557999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--HH-HHHCCCCCCCCCCCC
Q ss_conf 99999999749189999999640068--99-986679888844359
Q gi|254780636|r 165 LQFTEKLQRLGRSDLATSCCNFLMDR--AE-LDLLGWENVDIFSHS 207 (207)
Q Consensus 165 ~~l~~~L~~~~~~~~~~~e~~~l~~~--~~-me~~g~~~~~~~~~~ 207 (207)
T Consensus 160 ~~L~~~L~~~~r~~~a~~ef~~l~~r~~~~~~~~~~w~~i~~-a~~ 204 (361)
T COG0349 160 DKLTEELAREGRLEWAEDEFRLLPTRRTYKVLPEDAWREIKI-AHS 204 (361)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHC
T ss_conf 999999987485499999999731023455681767888666-504