HHsearch alignment for GI: 254780636 and conserved domain: COG0349

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=349.01  Aligned_cols=198  Identities=42%  Similarity=0.644  Sum_probs=180.1

Q ss_pred             CCCCCCHH-H-HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCH
Q ss_conf             25788857-8-424898279971777898544507999984189428997465778570677677732364023010000
Q gi|254780636|r    7 HEGDIPAE-C-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF   84 (207)
Q Consensus         7 ~~~dl~~~-~-~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~   84 (207)
T Consensus         2 ~~~~~l~~~~~~~~~~~~iAIDTEf~r~~t~~p~LcLIQi~~~e~-~~lIdp~~~~~d~~~l~~Ll~d~~v~KIfHaa~~   80 (361)
T COG0349           2 TTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEG-ASLIDPLAGILDLPPLVALLADPNVVKIFHAARF   80 (361)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC-CEEECCCCCCCCCCHHHHHHCCCCEEEEECCCCC
T ss_conf             742679999997428980798322246643688337999844888-6686226554666369998628760255025635


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             16888654200000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r   85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR  164 (207)
Q Consensus        85 D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~  164 (207)
T Consensus        81 DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~  159 (361)
T COG0349          81 DLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLY  159 (361)
T ss_pred             CHHHHHHHCCCCCCCHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             199999861888773468999999809863-2329999999968853644454655557999999999999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH--HH-HHHCCCCCCCCCCCC
Q ss_conf             99999999749189999999640068--99-986679888844359
Q gi|254780636|r  165 LQFTEKLQRLGRSDLATSCCNFLMDR--AE-LDLLGWENVDIFSHS  207 (207)
Q Consensus       165 ~~l~~~L~~~~~~~~~~~e~~~l~~~--~~-me~~g~~~~~~~~~~  207 (207)
T Consensus       160 ~~L~~~L~~~~r~~~a~~ef~~l~~r~~~~~~~~~~w~~i~~-a~~  204 (361)
T COG0349         160 DKLTEELAREGRLEWAEDEFRLLPTRRTYKVLPEDAWREIKI-AHS  204 (361)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHC
T ss_conf             999999987485499999999731023455681767888666-504