HHsearch alignment for GI: 254780636 and conserved domain: COG0847
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair].
Probab=98.10 E-value=5.9e-05 Score=48.07 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCCEEEECCCCCCCCCCCEE---EEEEEEEC---CCCE-EEECCCCC-CCC--------------CH-------HHHHHH
Q ss_conf 98279971777898544507---99998418---9428-99746577-857--------------06-------776777
Q gi|254780636|r 20 VDAIAVDTETLGLMPRRDRL---CIVQLSPG---DGTV-DIIRIAAG-QKN--------------AP-------NLVGML 70 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~~~l---~LiQl~~~---~~~~-~l~~~~~~-~~~--------------~~-------~L~~ll 70 (207)
T Consensus 13 ~~~vv~D~ETtg~~~~~~~iieIgav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~i 92 (243)
T COG0847 13 TRFVVIDLETTGLNPKKDRIIEIGAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFI 92 (243)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf 75799966148988778854899659967784024311146688987875431147738899747863899999999984
Q ss_pred HCCCCCEEECCCCHHHHHHHHHHHC---CC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCC
Q ss_conf 3236402301000016888654200---00--000457898865211000000887776542002467520036565443
Q gi|254780636|r 71 VDEKREKIFHYGRFDIAVLFYTFGV---RV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 (207)
Q Consensus 71 ~d~~i~KV~Hn~~~D~~~L~~~~gi---~~--~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpL 145 (207)
T Consensus 93 ~~~~-~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~-~~gi~~~-~~~-------~- 161 (243)
T COG0847 93 GGLR-LLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAE-RLGIDRN-PFH-------P- 161 (243)
T ss_pred CCCC-EEEEEEHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-HCCCCCC-CCC-------C-
T ss_conf 7888-699950530889999899970898757642007999998769976134899999-6298877-777-------6-
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-HHHCC
Q ss_conf 2368999986459999999999999-99749
Q gi|254780636|r 146 SDEQLQYAASDVVHLHALRLQFTEK-LQRLG 175 (207)
Q Consensus 146 s~~Qi~YAA~Dv~~l~~L~~~l~~~-L~~~~ 175 (207)
T Consensus 162 -----H~Al~Da~~~a~~~~~~~~~~~~~~~ 187 (243)
T COG0847 162 -----HRALFDALALAELFLLLQTGLLLKAP 187 (243)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----61678899999999998620001011