HHsearch alignment for GI: 254780636 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.16 E-value=1.3e-09 Score=75.06 Aligned_cols=136 Identities=27% Similarity=0.344 Sum_probs=88.9
Q ss_pred CCCEEEECCCCCCCCCC-CEEEEEEEEE---CCCCE---EEECCCCCCC-----------------C-------CHHHHH
Q ss_conf 98279971777898544-5079999841---89428---9974657785-----------------7-------067767
Q gi|254780636|r 20 VDAIAVDTETLGLMPRR-DRLCIVQLSP---GDGTV---DIIRIAAGQK-----------------N-------APNLVG 68 (207)
Q Consensus 20 ~~~iaiDtEt~~l~~~~-~~l~LiQl~~---~~~~~---~l~~~~~~~~-----------------~-------~~~L~~ 68 (207)
T Consensus 3 ~~~~vvDlETTG~~~~~~d~I--Iqig~v~i~~~~i~~~f~t~vnP~~~iP~~I~~LTgI~~~~v~~AP~f~eva~~i~~ 80 (932)
T PRK08074 3 KRFVVVDLETTGNSPKKGDKI--IQIAAVVVEDGEILERFSTFVNPERPIPPFITELTGISEEMVKNAPLFEDVAPMIVE 80 (932)
T ss_pred CEEEEEEEECCCCCCCCCCEE--EEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 708999988889897779889--999799999999989985325899989977886069898998059998999999999
Q ss_pred HHHCCCCCEEECCCCHHHHHHHHHH---HCC-CC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCC
Q ss_conf 7732364023010000168886542---000-00-004578988652110000008877765420024675200365654
Q gi|254780636|r 69 MLVDEKREKIFHYGRFDIAVLFYTF---GVR-VR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 (207)
Q Consensus 69 ll~d~~i~KV~Hn~~~D~~~L~~~~---gi~-~~-~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~r 143 (207)
T Consensus 81 ~l~~~--~~VaHNv~FD~~FL~~~l~~~G~~~~~~~~~DTveLa~i~~P~~~sy~L~~L~~~-l~i~~~~~--------- 148 (932)
T PRK08074 81 LLEGA--YFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTADSYKLSDLSEE-LELEHDQP--------- 148 (932)
T ss_pred HHCCC--EEEECCHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHH-CCCCCCCC---------
T ss_conf 96699--5994780540999999999739986668765199999997788788888999986-49999998---------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 432368999986459999999999999997491
Q gi|254780636|r 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 (207)
Q Consensus 144 pLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~~~~ 176 (207)
T Consensus 149 -------HrA~sDa~aTa~l~~~l~~~l~~lp~ 174 (932)
T PRK08074 149 -------HRADSDAEVTAELFLQLLHKLERLPL 174 (932)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf -------75178899999999999999983799