HHsearch alignment for GI: 254780636 and conserved domain: PRK08517
>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=99.14 E-value=6.7e-10 Score=76.81 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=88.0
Q ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEEEEE---CCCCE-----EEECCCCCC--------------CCC-------HHHH
Q ss_conf 248982799717778985445079999841---89428-----997465778--------------570-------6776
Q gi|254780636|r 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV-----DIIRIAAGQ--------------KNA-------PNLV 67 (207)
Q Consensus 17 l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~---~~~~~-----~l~~~~~~~--------------~~~-------~~L~ 67 (207)
T Consensus 67 ~ke~~fvvvDlETTGl~~~~d~I--IEIgavkv~~g~iid~f~tlVnp~~Ip~~It~lTGIt~emv~~aP~~~evl~~f~ 144 (259)
T PRK08517 67 IKEQVFCFVDIETNGSKPKKGQI--IEIGAVKVKGGEIIDRFESFVKAKEVPEYITELTGITYEDLENAPSLKEVLEDFR 144 (259)
T ss_pred CCCCCEEEEEEECCCCCCCCCEE--EEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 67883899996589989999824--9999999999999998743239898998882213899899827998899999999
Q ss_pred HHHHCCCCCEEECCCCHHHHHHHHHHH---CC-C-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCC
Q ss_conf 777323640230100001688865420---00-0-000457898865211000000887776542002467520036565
Q gi|254780636|r 68 GMLVDEKREKIFHYGRFDIAVLFYTFG---VR-V-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 (207)
Q Consensus 68 ~ll~d~~i~KV~Hn~~~D~~~L~~~~g---i~-~-~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~ 142 (207)
T Consensus 145 ~Fi~d~--ilVaHNa~FD~~FL~~~l~r~g~~~l~n~~lDTl~LAR~~~p~-~~ykL~~La~~-~~I~~~~~-------- 212 (259)
T PRK08517 145 LFLGDS--VFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIES-PRYGLSFLKEL-LGIETEVH-------- 212 (259)
T ss_pred HHHCCC--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHCCC-CCCCHHHHHHH-CCCCCCCC--------
T ss_conf 996889--5999372760999999999839997689856608999987587-78788999997-59899999--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4432368999986459999999999999997
Q gi|254780636|r 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 (207)
Q Consensus 143 rpLs~~Qi~YAA~Dv~~l~~L~~~l~~~L~~ 173 (207)
T Consensus 213 --------HRAl~DA~aTaevF~~~L~~l~~ 235 (259)
T PRK08517 213 --------HRAYADALAAYEIFEICLLNLPS 235 (259)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHCCC
T ss_conf --------78458899999999999985665