HHsearch alignment for GI: 254780636 and conserved domain: PRK09146
>PRK09146 DNA polymerase III subunit epsilon; Validated.
Probab=98.83 E-value=2e-08 Score=68.28 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=84.9
Q ss_pred HCCCCCCEEEECCCCCCCCCCCEEE---EEEEE-----ECCCCEEEECCCCCCC-C--------------CH----HHHH
Q ss_conf 4248982799717778985445079---99984-----1894289974657785-7--------------06----7767
Q gi|254780636|r 16 AARYVDAIAVDTETLGLMPRRDRLC---IVQLS-----PGDGTVDIIRIAAGQK-N--------------AP----NLVG 68 (207)
Q Consensus 16 ~l~~~~~iaiDtEt~~l~~~~~~l~---LiQl~-----~~~~~~~l~~~~~~~~-~--------------~~----~L~~ 68 (207)
T Consensus 43 pl~d~~fvalD~ETTGLdp~~D~IiSIGaV~i~~~~I~l~~a~~~lV~p~~~i~~~s~~IHGIt~~~l~~ap~l~evl~~ 122 (239)
T PRK09146 43 PLSEVPFVALDFETTGLDPEQDAIVSIGLVPFTLQRIRCRQARHWVVKPRRPLNEESVVIHGITHSDLQDAPDLERILDE 122 (239)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCEEEECCEEEEEECCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHH
T ss_conf 32108789996415788878885489989998788886534158998899978764511069698998569999999999
Q ss_pred HHHC-CCCCEEECCCCHHHHHHHHH----HHCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCC
Q ss_conf 7732-36402301000016888654----20000-000457898865211000000887776542002467520036565
Q gi|254780636|r 69 MLVD-EKREKIFHYGRFDIAVLFYT----FGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 (207)
Q Consensus 69 ll~d-~~i~KV~Hn~~~D~~~L~~~----~gi~~-~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~ 142 (207)
T Consensus 123 ll~~l~g~VLVaH~a~~D~~FL~~a~~~~~g~~l~~P~IDTl~Le~~~~~----~~~~~~~~r~~~~~~~-slrL~~~r~ 197 (239)
T PRK09146 123 LLEALAGKVVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQR----KQAGGLWNRLKGKKPE-SIRLADSRL 197 (239)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH----HHHHHHHHHHCCCCCC-CCCHHHHHH
T ss_conf 99981899899968399999999999996288988746448999999988----5420044431358986-763899999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4-432368999986459999999999999
Q gi|254780636|r 143 D-DLSDEQLQYAASDVVHLHALRLQFTEK 170 (207)
Q Consensus 143 r-pLs~~Qi~YAA~Dv~~l~~L~~~l~~~ 170 (207)
T Consensus 198 rYgLP~y~aH~AL~DAlATAELflAQi~~ 226 (239)
T PRK09146 198 RYGLPAYPPHHALTDAIATAELLQAQIAH 226 (239)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 81989888767199999999999999998