HHsearch alignment for GI: 254780636 and conserved domain: PRK10829

>PRK10829 ribonuclease D; Provisional.
Probab=100.00  E-value=0  Score=323.69  Aligned_cols=185  Identities=24%  Similarity=0.344  Sum_probs=166.7

Q ss_pred             CCEEECCC--CCCHHHH-CCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEE
Q ss_conf             72153257--8885784-24898279971777898544507999984189428997465778570677677732364023
Q gi|254780636|r    2 TTIRVHEG--DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI   78 (207)
Q Consensus         2 ~~~~~~~~--dl~~~~~-l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV   78 (207)
T Consensus         1 m~y~~I~t~~~L~~~~~~l~~~~~iavDTEf~r~~ty~p~l~LiQi~~~~~~~lIDpl~-~-~dl~~l~~ll~~~~i~kv   78 (373)
T PRK10829          1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEQLALIDPLG-I-TDWSPFKALLRDPSITKF   78 (373)
T ss_pred             CEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCEEEEECCC-C-CCHHHHHHHHCCCCCEEE
T ss_conf             91599798999999999970799189857745677789845899985189679994787-7-776999999709884165


Q ss_pred             ECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             01000016888654200000004578988652110000008877765420024675200365654432368999986459
Q gi|254780636|r   79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV  158 (207)
Q Consensus        79 ~Hn~~~D~~~L~~~~gi~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~  158 (207)
T Consensus        79 ~Haa~qDle~l~~~~g~~p~~iFDTQiAa~~l-g~~~~~gy~~Lv~~~l~v~l~K~~~~sDW~~RPLs~~ql~YA~~DV~  157 (373)
T PRK10829         79 LHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSWGFASMVEEYSGVALDKSESRTDWLARPLSERQCEYAAADVW  157 (373)
T ss_pred             EECCCCHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             20642159999998198874077648899865-78655589999999939665666462757889999899999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             9999999999999974918999999964006
Q gi|254780636|r  159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMD  189 (207)
Q Consensus       159 ~l~~L~~~l~~~L~~~~~~~~~~~e~~~l~~  189 (207)
T Consensus       158 yL~~l~~~L~~~l~~~~r~~w~~eE~~~l~~  188 (373)
T PRK10829        158 YLLPIAAKLMVETEAAGWLPAALDECRLMQQ  188 (373)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999999999835755899999999972