HHsearch alignment for GI: 254780636 and conserved domain: PTZ00166
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional.
Probab=96.46 E-value=0.031 Score=32.26 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=78.1
Q ss_pred CCCCEEEECCCCCCC----C--CCCEEEEEEEEE-----CCC-CE---EEECCCCCC--------------CCCHHHHHH
Q ss_conf 898279971777898----5--445079999841-----894-28---997465778--------------570677677
Q gi|254780636|r 19 YVDAIAVDTETLGLM----P--RRDRLCIVQLSP-----GDG-TV---DIIRIAAGQ--------------KNAPNLVGM 69 (207)
Q Consensus 19 ~~~~iaiDtEt~~l~----~--~~~~l~LiQl~~-----~~~-~~---~l~~~~~~~--------------~~~~~L~~l 69 (207)
T Consensus 289 PlrilSfDIEC~~~~G~gFP~~~~Dp--VIqIs~~~~~~g~~~~~~~~~~ftl~~C~~I~g~~V~~F~tE~eLL~aF~~f 366 (1081)
T PTZ00166 289 PIRILSFDIECIKLDGKGFPEANNDP--VIQISSVLHTHGDPLDSCKNFIFTLKECASLAGANVLWFDNEKTLLLAWNDF 366 (1081)
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCC--EEEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 81699986784588899898999995--7998579881478887646446674787788997799709999999999999
Q ss_pred H--HCCCCCEEECCC-CHHHHHHHHHHHC---C----------------------------------CCC--HHHHHHHH
Q ss_conf 7--323640230100-0016888654200---0----------------------------------000--04578988
Q gi|254780636|r 70 L--VDEKREKIFHYG-RFDIAVLFYTFGV---R----------------------------------VRP--VFCTKIAS 107 (207)
Q Consensus 70 l--~d~~i~KV~Hn~-~~D~~~L~~~~gi---~----------------------------------~~~--i~DT~ias 107 (207)
T Consensus 367 i~~~DPDII-TGYNI~nFDlpYLl~Ra~~L~i~~f~~lgRlk~~~~~~~~~~~~s~a~G~~~~k~i~i~GRv~~Dl~~~v 445 (1081)
T PTZ00166 367 IIAVDPDFL-TGYNIINFDLPYLLNRATALNLKKFKFLTRIKSVKSTVKDSIFSSNQFGTHENKEINIEGRILFDVYDLI 445 (1081)
T ss_pred HHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCEEEEEHHHHH
T ss_conf 987099899-9668788888999999999588643323611577652202656655556665506867578996469999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCC-CC-EECC-CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65211000000887776542002467-52-0036-565443-236899998645999999999999999
Q gi|254780636|r 108 RLTRTYTNQHGLKDNLKELLGINISK-AQ-QSSD-WSADDL-SDEQLQYAASDVVHLHALRLQFTEKLQ 172 (207)
Q Consensus 108 ~l~~~~~~~~~L~~L~~~~lg~~ldK-~~-q~Sd-W~~rpL-s~~Qi~YAA~Dv~~l~~L~~~l~~~L~ 172 (207)
T Consensus 446 ~r-~~kL~SYkLntVs~~fLgeqKeDV~~~~I~~l~~~~~e~r~rla~YClkDa~L~lrL~~KL~~l~n 513 (1081)
T PTZ00166 446 RR-DYKLKSYSLNYVSFEFLKEQKEDVHYSTINKLQNGNPEDRKRIASYCLKDSILPLRLIDKLLLLYN 513 (1081)
T ss_pred HH-HCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87-558785768889999818875337999999998149378899999989989999999999989999