HHsearch alignment for GI: 254780636 and conserved domain: cd06129
>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=100.00 E-value=8.7e-43 Score=267.92 Aligned_cols=148 Identities=25% Similarity=0.304 Sum_probs=136.5
Q ss_pred HCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHC
Q ss_conf 42489827997177789854450799998418942899746577857067767773236402301000016888654200
Q gi|254780636|r 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 (207)
Q Consensus 16 ~l~~~~~iaiDtEt~~l~~~~~~l~LiQl~~~~~~~~l~~~~~~~~~~~~L~~ll~d~~i~KV~Hn~~~D~~~L~~~~gi 95 (207)
T Consensus 11 ~~~~~~vig~DtE~~~~~~~~~~v~LiQlat~~-~~~lid~~~~~~~~~~L~~lL~~~~i~Kvgh~~~~D~~~L~~~~g~ 89 (159)
T cd06129 11 AKNESIVVALDCEWIPLRLYYGEVTLIQIGTTE-HAFLFDVLSLSAFDGGLKTVLENPSITKVGHGCRGDLAKLLRDFGI 89 (159)
T ss_pred HCCCCEEEEEECCCCCCCCCCCCEEEEEEEECC-EEEEEECCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC
T ss_conf 545980899979768987998978999994599-6899954888767799999982999249995669999999675084
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 000004578988652110000008877765420024675200365654432368999986459999999
Q gi|254780636|r 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 (207)
Q Consensus 96 ~~~~i~DT~ias~l~~~~~~~~~L~~L~~~~lg~~ldK~~q~SdW~~rpLs~~Qi~YAA~Dv~~l~~L~ 164 (207)
T Consensus 90 ~~~~~~Dt~~~~~~l~~~~~~~sL~~l~~~~lg~~ldK~~q~SnW~~rpLt~~Qi~YAA~Da~~ll~ly 158 (159)
T cd06129 90 LLRNLFDTQAAHAILGYPEEYWSLNSLVEQYLGPCLDKSRQLSDWAKRPLTEEQMLYAAADVYVLLHIY 158 (159)
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 324303699999995888431659999999808787710245888999999999999999999999976